Wall clock time and date at job start Fri Apr 10 2020 18:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00474 * 2 1 4 4 H 1.48504 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47010 * 299.99544 * 3 2 1 6 6 H 1.48492 * 109.47142 * 59.99839 * 3 2 1 7 7 C 1.38955 * 119.99539 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00227 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99679 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00243 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99927 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47040 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99532 * 179.97438 * 13 12 10 15 15 O 1.21581 * 120.00432 * 5.07788 * 14 13 12 16 16 N 1.34779 * 119.99718 * 185.07543 * 14 13 12 17 17 C 1.46927 * 120.62929 * 354.94291 * 16 14 13 18 18 C 1.53195 * 108.77434 * 126.41301 * 17 16 14 19 19 C 1.53045 * 109.30991 * 54.63426 * 18 17 16 20 20 C 1.53032 * 109.53866 * 298.63521 * 19 18 17 21 21 H 1.08999 * 109.52888 * 301.39606 * 20 19 18 22 22 C 1.50703 * 109.49736 * 181.31874 * 20 19 18 23 23 C 1.39881 * 125.89599 * 275.39445 * 22 20 19 24 24 C 1.35315 * 107.91533 * 180.14054 * 23 22 20 25 25 N 1.34949 * 107.75153 * 359.64480 * 24 23 22 26 26 H 0.96992 * 126.04007 * 180.20273 * 25 24 23 27 27 N 1.30838 * 125.90150 * 95.13582 * 22 20 19 28 28 C 1.46927 * 120.63201 * 174.96844 * 16 14 13 29 29 H 0.97009 * 119.99461 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00142 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47143 * 59.99702 * 12 10 9 32 32 H 1.08991 * 109.46958 * 299.99614 * 12 10 9 33 33 H 0.96994 * 119.99881 * 0.02562 * 13 12 10 34 34 H 1.08993 * 109.58988 * 246.19925 * 17 16 14 35 35 H 1.08998 * 109.58948 * 6.62888 * 17 16 14 36 36 H 1.08999 * 109.50153 * 174.58229 * 18 17 16 37 37 H 1.09001 * 109.49882 * 294.68443 * 18 17 16 38 38 H 1.09002 * 109.45757 * 178.61394 * 19 18 17 39 39 H 1.09000 * 109.46127 * 58.66026 * 19 18 17 40 40 H 1.07999 * 126.04074 * 0.02562 * 23 22 20 41 41 H 1.08003 * 126.12257 * 179.90778 * 24 23 22 42 42 H 1.09000 * 109.58892 * 113.79597 * 28 16 14 43 43 H 1.09001 * 109.58190 * 353.37316 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8895 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2036 0.0010 9 7 1.3231 -2.3907 0.0005 10 6 1.9969 -3.5579 0.0016 11 8 3.2099 -3.5581 0.0021 12 6 1.2433 -4.8630 0.0010 13 7 2.1953 -5.9766 0.0017 14 6 1.7458 -7.2472 0.0019 15 8 0.5544 -7.4707 -0.0917 16 7 2.6172 -8.2702 0.1058 17 6 4.0655 -8.0225 0.1085 18 6 4.6764 -8.6832 1.3483 19 6 4.2919 -10.1643 1.3738 20 6 2.7696 -10.2965 1.4567 21 1 2.4083 -9.7921 2.3528 22 6 2.3937 -11.7548 1.5144 23 6 2.2334 -12.6046 0.4149 24 6 1.8931 -13.8285 0.8810 25 7 1.8475 -13.7579 2.2278 26 1 1.6323 -14.4867 2.8305 27 7 2.1656 -12.4459 2.6017 28 6 2.1370 -9.6542 0.2181 29 1 -0.4850 0.8402 -0.0004 30 1 0.3532 -2.3906 0.0005 31 1 0.6177 -4.9209 -0.8897 32 1 0.6157 -4.9205 0.8902 33 1 3.1489 -5.7994 0.0029 34 1 4.5108 -8.4495 -0.7900 35 1 4.2526 -6.9491 0.1368 36 1 5.7618 -8.5897 1.3128 37 1 4.2977 -8.1935 2.2454 38 1 4.7458 -10.6424 2.2419 39 1 4.6495 -10.6481 0.4648 40 1 2.3574 -12.3315 -0.6226 41 1 1.6974 -14.7059 0.2824 42 1 2.4250 -10.2143 -0.6715 43 1 1.0516 -9.6572 0.3189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588747365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:42 Heat of formation + Delta-G solvation = -14.814152 kcal Electronic energy + Delta-G solvation = -26399.675374 eV Core-core repulsion = 22480.409620 eV Total energy + Delta-G solvation = -3919.265754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.20168 -41.45618 -40.14490 -38.59054 -36.25953 -35.46465 -34.49376 -33.34808 -32.94142 -31.10177 -30.60350 -29.19556 -26.75894 -25.82411 -24.67286 -22.59071 -22.34331 -21.38915 -20.83701 -20.15991 -20.01364 -19.22467 -18.92523 -17.56052 -17.20856 -16.88931 -16.55512 -16.00961 -15.84451 -15.80969 -15.62507 -15.32985 -15.28247 -14.80477 -14.51414 -14.41893 -14.12656 -13.90818 -13.80271 -13.53659 -13.46083 -13.36322 -12.90184 -12.42962 -12.34592 -12.09909 -11.94680 -11.89265 -11.73150 -11.56649 -11.50701 -11.24698 -10.54098 -10.36520 -10.26888 -10.08050 -9.62065 -9.49438 -8.49701 -5.99738 1.00695 1.36310 1.43070 1.49754 1.59299 1.85922 1.90657 2.06569 2.11993 2.29369 2.84206 3.16782 3.17562 3.57913 3.76264 3.88661 4.04297 4.08487 4.20064 4.22675 4.37936 4.43425 4.47161 4.56508 4.57606 4.68709 4.81962 4.83051 4.91834 4.93458 5.06534 5.17297 5.22393 5.33084 5.40491 5.42513 5.52072 5.71604 5.88300 5.93858 6.49254 6.52405 6.76676 6.90794 7.04799 7.42716 7.51131 7.95549 8.67489 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.034492 B = 0.002140 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.589277 B =13081.691628 C =13501.785065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.013 4.013 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.560 5.560 10 C 0.435 3.565 11 O -0.623 6.623 12 C 0.140 3.860 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.631 6.631 16 N -0.623 5.623 17 C 0.103 3.897 18 C -0.129 4.129 19 C -0.096 4.096 20 C -0.017 4.017 21 H 0.063 0.937 22 C 0.077 3.923 23 C -0.288 4.288 24 C 0.074 3.926 25 N -0.475 5.475 26 H 0.450 0.550 27 N -0.339 5.339 28 C 0.147 3.853 29 H 0.279 0.721 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.409 0.591 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.163 0.837 41 H 0.219 0.781 42 H 0.095 0.905 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.693 -27.429 0.308 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.511 6.511 12 C 0.011 3.989 13 N -0.385 5.385 14 C 0.407 3.593 15 O -0.512 6.512 16 N -0.360 5.360 17 C -0.019 4.019 18 C -0.167 4.167 19 C -0.135 4.135 20 C -0.038 4.038 21 H 0.082 0.918 22 C -0.090 4.090 23 C -0.317 4.317 24 C -0.074 4.074 25 N -0.184 5.184 26 H 0.296 0.704 27 N -0.163 5.163 28 C 0.023 3.977 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.250 0.750 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.181 0.819 41 H 0.236 0.764 42 H 0.113 0.887 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.438 -27.382 1.517 28.169 hybrid contribution -0.224 0.697 -0.324 0.801 sum 6.213 -26.684 1.193 27.424 Atomic orbital electron populations 1.69695 1.07033 1.29533 1.49423 1.26156 0.96559 1.02747 0.95871 0.84792 0.78160 0.76662 0.78241 1.19322 1.19663 1.19738 1.19782 0.92982 0.83459 1.50186 0.89455 1.41842 1.09600 1.04598 1.63478 1.20371 0.88109 0.85821 0.83475 1.90458 1.15083 1.87541 1.57976 1.20594 0.91089 0.83230 1.03954 1.44889 1.11086 1.03233 1.79306 1.15864 0.84762 0.80900 0.77771 1.90864 1.15956 1.84411 1.60004 1.47231 1.06449 1.05444 1.76848 1.21949 0.78459 1.01242 1.00293 1.21912 1.02295 0.95280 0.97212 1.21451 0.92069 0.96371 1.03560 1.19791 0.97655 0.87760 0.98634 0.91831 1.22162 0.99030 0.96201 0.91567 1.21738 1.16041 0.93280 1.00609 1.23277 0.98480 1.00969 0.84680 1.46403 1.55540 1.09579 1.06908 0.70352 1.77238 1.24437 0.90710 1.23890 1.21413 0.99289 0.79270 0.97686 0.91112 0.76726 0.89061 0.89266 0.74964 0.88434 0.90626 0.87790 0.92724 0.91480 0.89444 0.81909 0.76414 0.88685 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 3 Si 1.00 41.94 29.55 68.60 2.03 43.96 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 8 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 9 N -0.56 -28.42 5.29 -306.97 -1.62 -30.04 16 10 C 0.44 20.38 7.85 87.66 0.69 21.07 16 11 O -0.62 -32.21 15.24 -3.07 -0.05 -32.26 16 12 C 0.14 5.35 6.16 85.63 0.53 5.88 16 13 N -0.73 -25.29 5.44 -482.30 -2.62 -27.91 16 14 C 0.71 24.04 8.30 179.05 1.49 25.52 16 15 O -0.63 -25.73 15.78 -3.97 -0.06 -25.79 16 16 N -0.62 -15.82 2.97 -836.92 -2.49 -18.30 16 17 C 0.10 1.94 6.43 86.36 0.56 2.50 16 18 C -0.13 -2.04 6.08 30.67 0.19 -1.86 16 19 C -0.10 -1.48 5.15 30.62 0.16 -1.32 16 20 C -0.02 -0.34 2.80 -11.46 -0.03 -0.37 16 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 22 C 0.08 1.54 6.13 43.11 0.26 1.81 16 23 C -0.29 -4.19 9.96 21.99 0.22 -3.97 16 24 C 0.07 0.74 11.99 83.54 1.00 1.74 16 25 N -0.48 -6.38 7.36 -57.59 -0.42 -6.80 16 26 H 0.45 3.10 8.96 -213.34 -1.91 1.18 16 27 N -0.34 -7.47 12.70 -47.37 -0.60 -8.07 16 28 C 0.15 3.24 5.40 86.36 0.47 3.71 16 29 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 30 H 0.40 19.54 7.90 -92.71 -0.73 18.80 16 31 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 32 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.41 13.81 4.89 -92.71 -0.45 13.35 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.62 5.57 -2.39 -0.01 1.60 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.16 1.77 7.30 -2.91 -0.02 1.74 16 41 H 0.22 0.11 8.06 -2.91 -0.02 0.08 16 42 H 0.10 1.62 7.05 -2.39 -0.02 1.60 16 43 H 0.07 1.95 7.03 -2.39 -0.02 1.93 16 Total: -1.00 -75.17 357.50 -0.77 -75.95 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -2.02 Total: 41.29 kcal Atomic # 6 Polarization: 29.98 SS G_CDS: 6.80 Total: 36.78 kcal Atomic # 7 Polarization: -132.45 SS G_CDS: -7.48 Total: -139.93 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -0.11 Total: -58.06 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -75.17 -0.77 -75.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.133 kcal (2) G-P(sol) polarization free energy of solvation -75.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds