Wall clock time and date at job start Fri Apr 10 2020 18:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29939 * 126.28707 * 2 1 4 4 O 1.21301 * 110.24820 * 179.72784 * 3 2 1 5 5 C 1.33635 * 109.81228 * 0.46466 * 4 3 2 6 6 C 1.50706 * 126.55435 * 179.80380 * 5 4 3 7 7 N 1.46897 * 109.46900 * 269.69103 * 6 5 4 8 8 C 1.46901 * 111.00116 * 293.94903 * 7 6 5 9 9 C 1.46903 * 111.00174 * 169.99867 * 7 6 5 10 10 C 1.50691 * 109.47336 * 189.99688 * 9 7 6 11 11 O 1.21277 * 120.00353 * 0.02562 * 10 9 7 12 12 N 1.34783 * 120.00061 * 179.97438 * 10 9 7 13 13 C 1.46498 * 120.00200 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47316 * 89.99776 * 13 12 10 15 15 H 1.07995 * 119.99796 * 359.97438 * 14 13 12 16 16 C 1.37870 * 119.99803 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99920 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00382 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47365 * 90.00516 * 18 16 14 20 20 H 1.48503 * 109.47175 * 210.00717 * 18 16 14 21 21 H 1.48503 * 109.46842 * 330.00272 * 18 16 14 22 22 C 1.46494 * 119.99740 * 359.97438 * 12 10 9 23 23 C 1.53004 * 109.47224 * 90.00422 * 22 12 10 24 24 C 1.47188 * 109.47768 * 180.02562 * 23 22 12 25 25 N 9.44732 * 125.34840 * 359.30738 * 4 1 2 26 26 N 1.31133 * 106.89680 * 359.54056 * 5 4 3 27 27 H 1.09001 * 109.46900 * 269.98097 * 1 2 3 28 28 H 1.08998 * 109.46698 * 29.97863 * 1 2 3 29 29 H 1.09004 * 109.47034 * 149.97757 * 1 2 3 30 30 H 1.09000 * 109.46646 * 29.68211 * 6 5 4 31 31 H 1.09000 * 109.47248 * 149.68929 * 6 5 4 32 32 H 1.09006 * 109.46998 * 59.99689 * 8 7 6 33 33 H 1.08999 * 109.47622 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47363 * 300.00759 * 8 7 6 35 35 H 1.09000 * 109.46567 * 309.99872 * 9 7 6 36 36 H 1.09007 * 109.46953 * 69.99183 * 9 7 6 37 37 H 1.09002 * 109.47215 * 210.00147 * 13 12 10 38 38 H 1.09005 * 109.46596 * 329.99656 * 13 12 10 39 39 H 0.97006 * 120.00144 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.47401 * 210.00191 * 22 12 10 41 41 H 1.09001 * 109.47387 * 330.00440 * 22 12 10 42 42 H 1.09004 * 109.47142 * 300.00290 * 23 22 12 43 43 H 1.09000 * 109.47256 * 59.99031 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0054 5 6 3.5299 -0.6212 -0.0007 6 6 4.7970 -1.4371 -0.0012 7 7 5.2082 -1.7019 -1.3864 8 6 4.2357 -2.5663 -2.0682 9 6 6.5553 -2.2860 -1.4331 10 6 7.0406 -2.3163 -2.8594 11 8 6.3341 -1.8925 -3.7495 12 7 8.2602 -2.8133 -3.1460 13 6 8.7322 -2.8422 -4.5325 14 6 9.4598 -1.5594 -4.8424 15 1 9.5602 -0.7985 -4.0826 16 6 9.9963 -1.3568 -6.0961 17 7 10.6318 -0.2375 -6.3664 18 14 9.8221 -2.6725 -7.4106 19 1 8.5732 -2.4413 -8.1800 20 1 10.9876 -2.6123 -8.3289 21 1 9.7670 -4.0101 -6.7677 22 6 9.1142 -3.3237 -2.0707 23 6 8.8374 -4.8141 -1.8634 24 6 9.6950 -5.3269 -0.7826 25 7 10.3556 -5.7259 0.0497 26 7 2.3030 -1.0841 -0.0004 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 5.5844 -0.8855 0.5124 31 1 4.6208 -2.3822 0.5125 32 1 3.2612 -2.0780 -2.0802 33 1 4.5647 -2.7468 -3.0916 34 1 4.1596 -3.5160 -1.5386 35 1 7.2342 -1.6821 -0.8310 36 1 6.5249 -3.3015 -1.0380 37 1 9.4090 -3.6858 -4.6685 38 1 7.8802 -2.9481 -5.2042 39 1 11.0096 -0.0950 -7.2484 40 1 10.1609 -3.1827 -2.3401 41 1 8.9002 -2.7828 -1.1489 42 1 7.7906 -4.9552 -1.5940 43 1 9.0512 -5.3551 -2.7852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594052901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:52 Heat of formation + Delta-G solvation = 84.073630 kcal Electronic energy + Delta-G solvation = -26711.706949 eV Core-core repulsion = 22796.729291 eV Total energy + Delta-G solvation = -3914.977658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.71104 -39.75709 -37.53034 -36.87494 -36.12653 -35.33733 -33.24823 -32.78837 -31.08104 -29.68057 -29.25182 -28.12556 -27.26440 -24.28160 -24.00087 -23.42692 -22.00586 -21.14736 -18.68888 -18.28555 -17.83889 -17.51097 -16.92114 -16.82106 -16.11209 -15.76767 -15.16756 -15.14400 -14.68803 -14.55529 -14.14420 -14.02497 -13.84283 -13.77764 -13.40999 -12.99565 -12.90526 -12.70578 -12.60649 -12.56521 -12.31967 -12.19381 -11.95526 -11.85609 -11.62679 -11.49951 -11.46182 -11.19915 -11.11144 -10.90603 -10.59098 -10.23017 -10.10945 -9.60562 -9.23700 -8.63604 -8.53676 -7.94638 -6.12764 -4.12613 0.96169 2.00901 2.59941 2.63089 2.70751 3.12826 3.24347 3.28308 3.31158 3.35151 3.47148 3.78931 3.89324 4.11597 4.34774 4.62929 4.73158 4.81815 4.87779 4.95646 5.01796 5.08363 5.10557 5.17561 5.19188 5.25141 5.33163 5.37960 5.50537 5.51653 5.66732 5.67385 5.81096 5.95467 6.15018 6.47918 6.66577 6.71210 6.84721 7.15005 7.46553 7.53889 8.02057 8.02324 8.40283 8.79572 8.91782 9.46469 11.00493 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.003265 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.275510 B = 8575.017612 C =10244.041112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.164 3.836 3 N -0.385 5.385 4 O 0.089 5.911 5 C 0.201 3.799 6 C 0.143 3.857 7 N -0.520 5.520 8 C 0.017 3.983 9 C 0.036 3.964 10 C 0.512 3.488 11 O -0.511 6.511 12 N -0.593 5.593 13 C 0.216 3.784 14 C -0.531 4.531 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.265 1.265 22 C 0.116 3.884 23 C -0.051 4.051 24 C 0.215 3.785 25 N -0.441 5.441 26 N -0.481 5.481 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.027 0.973 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.032 0.968 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.952 -6.733 14.280 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 N -0.093 5.093 4 O 0.030 5.970 5 C -0.021 4.021 6 C 0.014 3.986 7 N -0.245 5.245 8 C -0.130 4.130 9 C -0.095 4.095 10 C 0.297 3.703 11 O -0.385 6.385 12 N -0.325 5.325 13 C 0.096 3.904 14 C -0.570 4.570 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.010 4.010 23 C -0.093 4.093 24 C -0.103 4.103 25 N -0.118 5.118 26 N -0.216 5.216 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.046 0.954 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.880 -6.027 14.613 21.036 hybrid contribution -0.047 -1.136 -0.709 1.340 sum -13.927 -7.163 13.904 20.942 Atomic orbital electron populations 1.20118 0.83048 1.04688 1.04090 1.25869 1.00544 0.83616 1.00871 1.74654 0.89478 1.24010 1.21138 1.85314 1.22122 1.24669 1.64877 1.28484 0.96419 0.82218 0.94936 1.20534 0.88950 0.97110 0.92045 1.61486 1.02190 1.48686 1.12168 1.22660 0.95572 0.93692 1.01121 1.22132 0.90463 0.99648 0.97214 1.20052 0.81796 0.78476 0.89948 1.90686 1.54951 1.44674 1.48193 1.47880 1.15083 1.60464 1.09107 1.19717 0.95288 0.97988 0.77380 1.21299 1.34725 1.01879 0.99084 0.90576 1.24858 0.94625 0.95385 0.98077 1.69892 1.36650 1.24704 1.22064 0.86883 0.78131 0.82443 0.82366 1.19929 1.21153 1.19008 1.21345 0.98021 0.89949 0.91688 1.19898 0.97321 0.98552 0.93479 1.29006 0.93833 0.93421 0.94047 1.81192 1.10013 1.09134 1.11511 1.71894 0.99719 1.29503 1.20528 0.89478 0.89540 0.89086 0.86676 0.89731 0.91475 0.88497 0.95436 0.87407 0.91649 0.94993 0.94293 0.92505 0.88373 0.90296 0.87636 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.08 16 2 C 0.16 1.92 8.22 -156.38 -1.28 0.63 16 3 N -0.38 -5.18 12.16 30.89 0.38 -4.80 16 4 O 0.09 1.17 11.31 18.12 0.20 1.37 16 5 C 0.20 2.30 7.13 -13.05 -0.09 2.21 16 6 C 0.14 1.25 5.59 -4.97 -0.03 1.22 16 7 N -0.52 -6.22 4.49 -245.82 -1.10 -7.32 16 8 C 0.02 0.21 9.01 60.07 0.54 0.75 16 9 C 0.04 0.39 4.00 -4.98 -0.02 0.37 16 10 C 0.51 8.36 7.36 -10.99 -0.08 8.28 16 11 O -0.51 -10.86 13.91 5.56 0.08 -10.78 16 12 N -0.59 -9.58 2.46 -175.06 -0.43 -10.01 16 13 C 0.22 4.54 4.23 -5.19 -0.02 4.52 16 14 C -0.53 -14.01 9.94 -34.44 -0.34 -14.35 16 15 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 18 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.27 -5.61 6.54 56.52 0.37 -5.24 16 22 C 0.12 1.30 5.17 -4.04 -0.02 1.28 16 23 C -0.05 -0.42 6.02 -29.52 -0.18 -0.60 16 24 C 0.22 2.21 15.43 -20.80 -0.32 1.89 16 25 N -0.44 -5.84 18.53 42.12 0.78 -5.06 16 26 N -0.48 -5.80 10.85 -9.87 -0.11 -5.90 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.12 0.72 7.93 -51.93 -0.41 0.31 16 31 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.07 0.88 6.75 -51.93 -0.35 0.53 16 33 H 0.10 1.44 5.83 -51.93 -0.30 1.14 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.11 0.95 7.19 -51.93 -0.37 0.58 16 36 H 0.07 0.48 7.17 -51.92 -0.37 0.11 16 37 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 38 H 0.04 0.89 6.85 -51.93 -0.36 0.53 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 41 H 0.08 0.69 6.44 -51.93 -0.33 0.36 16 42 H 0.11 0.63 7.22 -51.93 -0.37 0.26 16 43 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -36.10 369.73 -5.88 -41.99 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.79 Total: -2.90 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -1.57 Total: 8.05 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.29 Total: -58.91 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.28 Total: -9.41 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.10 -5.88 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594052901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.062 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds