Wall clock time and date at job start Fri Apr 10 2020 18:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.36450 * 125.85230 * 274.69108 * 10 9 7 12 12 C 1.34953 * 108.94676 * 179.85761 * 11 10 9 13 13 C 1.41204 * 108.24384 * 0.40651 * 12 11 10 14 14 N 1.32934 * 126.37551 * 179.79290 * 13 12 11 15 15 C 1.33827 * 120.00597 * 359.94721 * 14 13 12 16 16 O 1.21840 * 119.99708 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00655 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00464 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47254 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.29690 * 295.41760 * 19 18 17 21 21 C 1.52925 * 109.29929 * 176.03992 * 19 18 17 22 22 C 1.53346 * 108.67248 * 188.93722 * 21 19 18 23 23 C 1.53062 * 108.42874 * 67.52464 * 22 21 19 24 24 C 1.50174 * 109.89307 * 311.10379 * 23 22 21 25 25 O 1.21290 * 118.24522 * 197.55527 * 24 23 22 26 26 N 1.33354 * 123.51244 * 17.57830 * 24 23 22 27 27 N 1.37414 * 107.24481 * 359.74403 * 13 12 11 28 28 H 0.97001 * 126.36966 * 180.02562 * 27 13 12 29 29 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 31 31 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 32 32 H 1.08003 * 125.52382 * 0.02562 * 11 10 9 33 33 H 1.08006 * 125.87462 * 180.17305 * 12 11 10 34 34 H 0.97003 * 119.99553 * 0.02562 * 17 15 14 35 35 H 1.09000 * 109.47349 * 300.00571 * 18 17 15 36 36 H 1.09000 * 109.47010 * 60.00088 * 18 17 15 37 37 H 1.08997 * 109.60139 * 308.68719 * 21 19 18 38 38 H 1.08998 * 109.60619 * 69.17457 * 21 19 18 39 39 H 1.09008 * 109.67240 * 307.79627 * 22 21 19 40 40 H 1.08997 * 109.70074 * 187.28230 * 22 21 19 41 41 H 1.08995 * 109.40628 * 190.97230 * 23 22 21 42 42 H 1.09007 * 109.40295 * 71.22945 * 23 22 21 43 43 H 0.96996 * 117.95040 * 177.75639 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7911 -4.1614 -1.1017 12 6 3.6081 -5.1617 -0.7104 13 6 3.5362 -5.2666 0.6959 14 7 4.1934 -6.1367 1.4563 15 6 5.0188 -7.0274 0.8937 16 8 5.1682 -7.0404 -0.3154 17 7 5.6847 -7.9099 1.6645 18 6 6.5886 -8.8845 1.0486 19 6 7.2118 -9.7608 2.1370 20 1 7.8369 -9.1437 2.7824 21 6 8.0772 -10.8392 1.4836 22 6 8.5116 -11.8399 2.5614 23 6 7.2733 -12.5995 3.0436 24 6 6.1719 -11.6303 3.3640 25 8 5.2508 -12.0154 4.0528 26 7 6.1520 -10.3691 2.9314 27 7 2.6613 -4.3010 1.1323 28 1 2.4080 -4.1277 2.0525 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.6309 -3.8446 -2.1217 33 1 4.2102 -5.7785 -1.3612 34 1 5.5654 -7.8998 2.6271 35 1 6.0289 -9.5111 0.3543 36 1 7.3766 -8.3589 0.5093 37 1 7.5005 -11.3557 0.7163 38 1 8.9578 -10.3795 1.0351 39 1 8.9630 -11.3057 3.3975 40 1 9.2325 -12.5416 2.1421 41 1 7.5242 -13.1708 3.9372 42 1 6.9394 -13.2814 2.2614 43 1 5.3839 -9.8223 3.1594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618990942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:54 Heat of formation + Delta-G solvation = 28.189144 kcal Electronic energy + Delta-G solvation = -25850.717821 eV Core-core repulsion = 21933.316830 eV Total energy + Delta-G solvation = -3917.400991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82435 -40.62993 -38.88899 -37.19824 -34.78406 -34.07652 -32.98292 -32.81228 -31.06333 -30.90466 -30.23164 -27.11738 -26.26095 -23.65157 -23.03464 -22.60586 -21.52230 -21.19712 -19.81064 -19.48533 -17.86065 -17.22905 -16.92383 -16.49815 -16.22841 -15.73947 -15.53164 -15.07664 -14.94247 -14.71831 -14.44783 -14.18609 -14.14150 -14.04328 -13.69536 -13.25531 -12.97872 -12.71856 -12.68342 -12.36568 -11.98545 -11.96199 -11.64967 -11.43517 -11.41002 -11.35922 -11.05334 -10.55276 -10.43268 -9.98574 -9.78469 -9.59520 -9.34305 -9.05045 -8.92291 -8.73193 -8.40807 -6.91998 -6.49367 -4.66197 1.76613 2.06041 2.42810 2.94589 3.06792 3.12178 3.12769 3.16525 3.52195 4.05489 4.16992 4.27510 4.30269 4.41122 4.49686 4.61381 4.77507 4.80898 4.87408 5.01897 5.25694 5.28225 5.31662 5.41282 5.46367 5.59162 5.65348 5.76059 5.83782 5.97175 6.18507 6.51303 6.51987 6.55368 6.68054 6.95510 7.11249 7.31177 7.38418 7.50879 7.60458 7.82061 7.99053 8.21559 8.38423 8.44187 9.04339 9.55404 10.52122 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.031566 B = 0.001954 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.810560 B =14322.724449 C =14535.525143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.559 4.559 8 H 0.069 0.931 9 C 0.255 3.745 10 N -0.345 5.345 11 C 0.162 3.838 12 C -0.334 4.334 13 C 0.487 3.513 14 N -0.714 5.714 15 C 0.686 3.314 16 O -0.630 6.630 17 N -0.735 5.735 18 C 0.129 3.871 19 C 0.129 3.871 20 H 0.083 0.917 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.136 4.136 24 C 0.519 3.481 25 O -0.560 6.560 26 N -0.714 5.714 27 N -0.470 5.470 28 H 0.444 0.556 29 H 0.272 0.728 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.394 0.606 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.512 -16.930 1.847 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.597 4.597 8 H 0.087 0.913 9 C 0.139 3.861 10 N -0.130 5.130 11 C 0.017 3.983 12 C -0.367 4.367 13 C 0.233 3.767 14 N -0.479 5.479 15 C 0.385 3.615 16 O -0.513 6.513 17 N -0.391 5.391 18 C 0.003 3.997 19 C 0.024 3.976 20 H 0.101 0.899 21 C -0.169 4.169 22 C -0.160 4.160 23 C -0.176 4.176 24 C 0.306 3.694 25 O -0.439 6.439 26 N -0.367 5.367 27 N -0.193 5.193 28 H 0.291 0.709 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.204 0.796 33 H 0.200 0.800 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 12.874 -16.951 2.233 21.403 hybrid contribution 0.031 1.409 0.281 1.437 sum 12.905 -15.543 2.514 20.358 Atomic orbital electron populations 1.69889 1.06127 1.28402 1.47898 1.24959 0.95023 0.99736 0.93822 0.86339 0.79424 0.81388 0.79177 1.19678 1.20811 1.19866 1.21373 0.94043 0.89552 1.54695 0.91270 1.20047 0.85615 0.79788 1.00684 1.47999 1.39932 1.28851 0.96264 1.22813 0.91363 0.92033 0.92109 1.22379 1.11828 1.07364 0.95104 1.18686 0.83895 0.84467 0.89618 1.68023 1.25926 1.16960 1.37001 1.16572 0.80214 0.80948 0.83731 1.90737 1.70044 1.75430 1.15045 1.44633 1.48349 1.36229 1.09852 1.21458 0.93611 0.90116 0.94467 1.21299 0.89030 0.94474 0.92833 0.89874 1.21888 1.00212 0.96337 0.98469 1.21655 0.97058 0.98357 0.98959 1.21659 0.93945 0.97768 1.04204 1.20202 0.87673 0.82607 0.78909 1.90779 1.37878 1.76343 1.38883 1.45667 1.24018 1.12888 1.54144 1.44457 1.41893 1.29361 1.03579 0.70851 0.91784 0.91404 0.93092 0.79609 0.80006 0.77169 0.91414 0.90552 0.90304 0.89163 0.90948 0.90196 0.88215 0.88181 0.76158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.45 13.29 55.43 0.74 -21.71 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.56 -13.21 9.39 -34.44 -0.32 -13.53 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.25 5.28 6.19 -5.19 -0.03 5.25 16 10 N -0.34 -6.35 3.63 -62.24 -0.23 -6.58 16 11 C 0.16 2.72 11.45 -16.66 -0.19 2.52 16 12 C -0.33 -6.18 9.52 -39.62 -0.38 -6.55 16 13 C 0.49 9.36 8.07 -155.30 -1.25 8.11 16 14 N -0.71 -13.80 10.59 -15.79 -0.17 -13.97 16 15 C 0.69 12.88 8.47 -87.76 -0.74 12.13 16 16 O -0.63 -13.19 13.26 5.06 0.07 -13.12 16 17 N -0.73 -10.16 5.18 -65.43 -0.34 -10.50 16 18 C 0.13 1.37 5.34 -4.04 -0.02 1.35 16 19 C 0.13 0.95 3.23 -68.37 -0.22 0.73 16 20 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 21 C -0.13 -0.68 5.30 -26.59 -0.14 -0.82 16 22 C -0.12 -0.56 6.03 -26.52 -0.16 -0.72 16 23 C -0.14 -0.91 6.03 -28.11 -0.17 -1.08 16 24 C 0.52 5.59 7.71 -11.87 -0.09 5.49 16 25 O -0.56 -8.64 17.78 5.55 0.10 -8.54 16 26 N -0.71 -6.76 5.11 -54.85 -0.28 -7.04 16 27 N -0.47 -8.35 7.38 31.33 0.23 -8.12 16 28 H 0.44 6.98 8.96 -182.55 -1.64 5.35 16 29 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.19 2.45 8.06 -52.48 -0.42 2.03 16 33 H 0.18 3.54 5.77 -52.48 -0.30 3.24 16 34 H 0.39 4.85 7.52 -40.82 -0.31 4.54 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.32 8.13 -51.92 -0.42 -0.10 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.40 4.27 7.23 -40.82 -0.30 3.97 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -32.07 362.44 -10.42 -42.48 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.16 Total: 12.98 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: -3.82 Total: 14.50 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -0.04 Total: -67.92 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.17 Total: -21.66 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.07 -10.42 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618990942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.671 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds