Wall clock time and date at job start Fri Apr 10 2020 18:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.36450 * 125.85230 * 274.69108 * 10 9 7 12 12 C 1.34953 * 108.94676 * 179.85761 * 11 10 9 13 13 C 1.41204 * 108.24384 * 0.40651 * 12 11 10 14 14 N 1.32934 * 126.37551 * 179.79290 * 13 12 11 15 15 C 1.33827 * 120.00597 * 359.94721 * 14 13 12 16 16 O 1.21840 * 119.99708 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00655 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00464 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47254 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.29690 * 295.41760 * 19 18 17 21 21 C 1.52925 * 109.29929 * 176.03992 * 19 18 17 22 22 C 1.53346 * 108.67248 * 188.93722 * 21 19 18 23 23 C 1.53062 * 108.42874 * 67.52464 * 22 21 19 24 24 C 1.50174 * 109.89307 * 311.10379 * 23 22 21 25 25 O 1.21290 * 118.24522 * 197.55527 * 24 23 22 26 26 N 1.33354 * 123.51244 * 17.57830 * 24 23 22 27 27 N 1.37414 * 107.24481 * 359.74403 * 13 12 11 28 28 H 0.97001 * 126.36966 * 180.02562 * 27 13 12 29 29 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 31 31 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 32 32 H 1.08003 * 125.52382 * 0.02562 * 11 10 9 33 33 H 1.08006 * 125.87462 * 180.17305 * 12 11 10 34 34 H 0.97003 * 119.99553 * 0.02562 * 17 15 14 35 35 H 1.09000 * 109.47349 * 300.00571 * 18 17 15 36 36 H 1.09000 * 109.47010 * 60.00088 * 18 17 15 37 37 H 1.08997 * 109.60139 * 308.68719 * 21 19 18 38 38 H 1.08998 * 109.60619 * 69.17457 * 21 19 18 39 39 H 1.09008 * 109.67240 * 307.79627 * 22 21 19 40 40 H 1.08997 * 109.70074 * 187.28230 * 22 21 19 41 41 H 1.08995 * 109.40628 * 190.97230 * 23 22 21 42 42 H 1.09007 * 109.40295 * 71.22945 * 23 22 21 43 43 H 0.96996 * 117.95040 * 177.75639 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7911 -4.1614 -1.1017 12 6 3.6081 -5.1617 -0.7104 13 6 3.5362 -5.2666 0.6959 14 7 4.1934 -6.1367 1.4563 15 6 5.0188 -7.0274 0.8937 16 8 5.1682 -7.0404 -0.3154 17 7 5.6847 -7.9099 1.6645 18 6 6.5886 -8.8845 1.0486 19 6 7.2118 -9.7608 2.1370 20 1 7.8369 -9.1437 2.7824 21 6 8.0772 -10.8392 1.4836 22 6 8.5116 -11.8399 2.5614 23 6 7.2733 -12.5995 3.0436 24 6 6.1719 -11.6303 3.3640 25 8 5.2508 -12.0154 4.0528 26 7 6.1520 -10.3691 2.9314 27 7 2.6613 -4.3010 1.1323 28 1 2.4080 -4.1277 2.0525 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 2.6309 -3.8446 -2.1217 33 1 4.2102 -5.7785 -1.3612 34 1 5.5654 -7.8998 2.6271 35 1 6.0289 -9.5111 0.3543 36 1 7.3766 -8.3589 0.5093 37 1 7.5005 -11.3557 0.7163 38 1 8.9578 -10.3795 1.0351 39 1 8.9630 -11.3057 3.3975 40 1 9.2325 -12.5416 2.1421 41 1 7.5242 -13.1708 3.9372 42 1 6.9394 -13.2814 2.2614 43 1 5.3839 -9.8223 3.1594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618990942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:53 Heat of formation + Delta-G solvation = 4.300390 kcal Electronic energy + Delta-G solvation = -25851.753715 eV Core-core repulsion = 21933.316830 eV Total energy + Delta-G solvation = -3918.436885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.25681 -41.44001 -40.22929 -38.10900 -36.07703 -35.38203 -34.56275 -33.65238 -32.49278 -32.32426 -31.21169 -28.52180 -27.29711 -25.00607 -24.02245 -23.46065 -22.83083 -22.56397 -21.14767 -20.08044 -19.12970 -18.73927 -18.19947 -17.56450 -17.35122 -16.99944 -16.57730 -16.40901 -16.36290 -15.91348 -15.60886 -15.42910 -15.17433 -14.66446 -14.58279 -14.48325 -14.35133 -14.13912 -13.74871 -13.65405 -13.46630 -13.06848 -12.72282 -12.67521 -12.32125 -12.26532 -12.08548 -11.87532 -11.80642 -11.25290 -11.21326 -10.81140 -10.76188 -10.49551 -10.16229 -9.95219 -9.91639 -8.53910 -8.19982 -6.54995 0.32602 0.61320 1.40396 1.42815 1.49926 1.60575 1.68903 2.11055 2.31278 2.46870 2.94178 3.04193 3.15782 3.54833 3.66435 3.82631 3.93906 3.95714 4.19952 4.26757 4.32469 4.47923 4.56036 4.63965 4.70153 4.83376 4.87383 4.92077 4.98586 5.01175 5.10111 5.14074 5.26391 5.37608 5.52082 5.67744 5.71681 5.73981 5.95967 6.14263 6.34170 6.35757 6.60024 6.88710 6.98166 7.16390 7.18731 8.12093 8.67181 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.031566 B = 0.001954 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.810560 B =14322.724449 C =14535.525143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.565 4.565 8 H 0.060 0.940 9 C 0.268 3.732 10 N -0.350 5.350 11 C 0.177 3.823 12 C -0.345 4.345 13 C 0.471 3.529 14 N -0.725 5.725 15 C 0.672 3.328 16 O -0.658 6.658 17 N -0.723 5.723 18 C 0.129 3.871 19 C 0.137 3.863 20 H 0.101 0.899 21 C -0.129 4.129 22 C -0.114 4.114 23 C -0.132 4.132 24 C 0.512 3.488 25 O -0.616 6.616 26 N -0.712 5.712 27 N -0.467 5.467 28 H 0.451 0.549 29 H 0.274 0.726 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.223 0.777 33 H 0.174 0.826 34 H 0.402 0.598 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.480 -17.203 1.398 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.604 4.604 8 H 0.078 0.922 9 C 0.151 3.849 10 N -0.136 5.136 11 C 0.032 3.968 12 C -0.378 4.378 13 C 0.218 3.782 14 N -0.490 5.490 15 C 0.371 3.629 16 O -0.542 6.542 17 N -0.378 5.378 18 C 0.004 3.996 19 C 0.032 3.968 20 H 0.119 0.881 21 C -0.167 4.167 22 C -0.151 4.151 23 C -0.171 4.171 24 C 0.301 3.699 25 O -0.499 6.499 26 N -0.363 5.363 27 N -0.191 5.191 28 H 0.299 0.701 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.239 0.761 33 H 0.191 0.809 34 H 0.237 0.763 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 14.895 -17.242 1.792 22.855 hybrid contribution -0.567 1.459 0.418 1.621 sum 14.328 -15.783 2.210 21.431 Atomic orbital electron populations 1.69958 1.07135 1.29036 1.48972 1.25614 0.95646 1.02402 0.93687 0.85502 0.78305 0.78329 0.78979 1.19236 1.20558 1.20113 1.21584 0.93777 0.90895 1.54100 0.92164 1.19727 0.85472 0.79414 1.00314 1.47847 1.40074 1.28764 0.96923 1.23346 0.89665 0.90693 0.93060 1.22297 1.12599 1.08106 0.94801 1.18927 0.84233 0.84798 0.90285 1.68088 1.26277 1.17320 1.37307 1.16910 0.80566 0.81554 0.83859 1.90710 1.71013 1.76322 1.16157 1.44629 1.47668 1.35439 1.10037 1.21635 0.92947 0.89595 0.95391 1.21426 0.88420 0.94937 0.92001 0.88126 1.21949 1.00445 0.95755 0.98528 1.21652 0.96230 0.98375 0.98866 1.21716 0.93430 0.97051 1.04936 1.21009 0.87942 0.83075 0.77828 1.90748 1.40272 1.77354 1.41568 1.45799 1.24132 1.12657 1.53691 1.44434 1.41706 1.29078 1.03839 0.70052 0.91733 0.91105 0.93969 0.76051 0.80882 0.76286 0.92713 0.90057 0.90521 0.86866 0.90422 0.87634 0.87589 0.87116 0.77266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.77 13.29 21.45 0.28 -45.49 16 2 C 0.03 1.38 5.46 84.65 0.46 1.84 16 3 Si 0.96 38.62 29.54 68.60 2.03 40.64 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.57 -26.27 9.39 25.60 0.24 -26.03 16 8 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.27 10.92 6.19 85.63 0.53 11.45 16 10 N -0.35 -12.62 3.63 -350.82 -1.28 -13.89 16 11 C 0.18 5.69 11.45 83.22 0.95 6.64 16 12 C -0.35 -12.65 9.52 22.24 0.21 -12.44 16 13 C 0.47 18.11 8.07 133.95 1.08 19.19 16 14 N -0.72 -28.16 10.59 -322.56 -3.42 -31.58 16 15 C 0.67 25.34 8.47 179.35 1.52 26.86 16 16 O -0.66 -27.73 13.26 -4.80 -0.06 -27.80 16 17 N -0.72 -19.78 5.18 -479.07 -2.48 -22.25 16 18 C 0.13 2.61 5.34 86.38 0.46 3.07 16 19 C 0.14 1.77 3.23 45.11 0.15 1.92 16 20 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 21 C -0.13 -0.95 5.30 30.69 0.16 -0.78 16 22 C -0.11 -0.65 6.03 30.73 0.19 -0.47 16 23 C -0.13 -1.51 6.03 29.70 0.18 -1.33 16 24 C 0.51 10.84 7.71 87.71 0.68 11.51 16 25 O -0.62 -19.57 17.78 -3.06 -0.05 -19.62 16 26 N -0.71 -13.08 5.11 -446.63 -2.28 -15.37 16 27 N -0.47 -16.47 7.38 -54.79 -0.40 -16.87 16 28 H 0.45 14.16 8.96 -213.28 -1.91 12.25 16 29 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.22 5.30 8.06 -2.91 -0.02 5.28 16 33 H 0.17 6.76 5.77 -2.91 -0.02 6.75 16 34 H 0.40 9.75 7.52 -92.71 -0.70 9.06 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 0.65 8.10 -2.39 -0.02 0.63 16 38 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.08 0.42 8.13 -2.38 -0.02 0.40 16 40 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.39 8.43 7.23 -92.71 -0.67 7.76 16 Total: -1.00 -69.75 362.44 -3.06 -72.81 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -2.21 Total: 37.99 kcal Atomic # 6 Polarization: 34.61 SS G_CDS: 6.81 Total: 41.42 kcal Atomic # 7 Polarization: -135.88 SS G_CDS: -9.57 Total: -145.45 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.12 Total: -47.42 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.64 kcal Total: -69.75 -3.06 -72.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618990942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.111 kcal (2) G-P(sol) polarization free energy of solvation -69.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds