Wall clock time and date at job start Fri Apr 10 2020 18:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39755 * 125.83955 * 2 1 4 4 C 1.36109 * 107.82722 * 179.72621 * 3 2 1 5 5 N 1.39482 * 126.21862 * 180.26456 * 4 3 2 6 6 C 1.46764 * 124.34893 * 268.24832 * 5 4 3 7 7 C 1.54474 * 105.46932 * 197.01463 * 6 5 4 8 8 C 1.54622 * 101.76910 * 334.58403 * 7 6 5 9 9 H 1.08999 * 110.48613 * 265.98868 * 8 7 6 10 10 N 1.46502 * 110.48881 * 143.47957 * 8 7 6 11 11 C 1.34776 * 120.00341 * 155.00529 * 10 8 7 12 12 O 1.21592 * 119.99786 * 359.97438 * 11 10 8 13 13 N 1.34768 * 119.99975 * 179.97438 * 11 10 8 14 14 C 1.46507 * 120.00064 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47378 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00074 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99793 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00141 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47064 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47164 * 120.00148 * 19 17 15 22 22 H 1.48497 * 109.47162 * 240.00290 * 19 17 15 23 23 C 1.34416 * 124.34461 * 87.94837 * 5 4 3 24 24 O 1.21291 * 124.94741 * 359.57311 * 23 5 4 25 25 N 1.35258 * 107.56784 * 0.39352 * 4 3 2 26 26 C 1.46503 * 126.04913 * 179.87722 * 25 4 3 27 27 N 1.30844 * 125.83826 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46886 * 270.01687 * 1 2 3 29 29 H 1.09005 * 109.47186 * 30.00916 * 1 2 3 30 30 H 1.08994 * 109.47401 * 150.01096 * 1 2 3 31 31 H 1.08004 * 126.08927 * 359.93534 * 3 2 1 32 32 H 1.08995 * 110.24715 * 316.01569 * 6 5 4 33 33 H 1.08999 * 110.24484 * 77.92842 * 6 5 4 34 34 H 1.09002 * 110.97044 * 92.70823 * 7 6 5 35 35 H 1.09004 * 110.96642 * 216.46327 * 7 6 5 36 36 H 0.97002 * 119.99292 * 334.99631 * 10 8 7 37 37 H 0.97004 * 120.00476 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.46543 * 300.00039 * 14 13 11 39 39 H 1.08998 * 109.46975 * 59.99754 * 14 13 11 40 40 H 0.97002 * 120.00167 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.46946 * 267.65605 * 26 25 4 42 42 H 1.09005 * 109.47103 * 147.65057 * 26 25 4 43 43 H 1.08999 * 109.47069 * 27.65710 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6196 0.7121 0.0062 5 7 4.7513 1.5274 0.0135 6 6 5.4513 1.9833 -1.1932 7 6 6.8373 2.4636 -0.7089 8 6 6.5452 2.8367 0.7629 9 1 6.3121 3.8981 0.8483 10 7 7.6863 2.4934 1.6151 11 6 7.8814 3.1489 2.7765 12 8 7.1105 4.0254 3.1168 13 7 8.9308 2.8326 3.5607 14 6 9.1432 3.5455 4.8229 15 6 10.3750 3.0063 5.5033 16 1 10.9427 2.2118 5.0418 17 6 10.7773 3.5272 6.7148 18 7 10.0857 4.4944 7.2768 19 14 12.3038 2.8584 7.5585 20 1 12.8968 1.7804 6.7269 21 1 13.2932 3.9522 7.7312 22 1 11.9344 2.3105 8.8883 23 6 5.3375 2.0011 1.1265 24 8 4.9555 1.7876 2.2577 25 7 3.6092 -0.6405 0.0011 26 6 4.7870 -1.5117 0.0024 27 7 2.2731 -1.0607 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8899 -0.5140 30 1 -0.3634 -0.8900 -0.5136 31 1 1.9902 2.1597 -0.0010 32 1 5.5627 1.1598 -1.8985 33 1 4.9066 2.8055 -1.6573 34 1 7.5716 1.6603 -0.7694 35 1 7.1674 3.3352 -1.2742 36 1 8.3014 1.7943 1.3435 37 1 9.5456 2.1331 3.2894 38 1 9.2755 4.6086 4.6218 39 1 8.2781 3.4030 5.4705 40 1 10.3685 4.8607 8.1294 41 1 5.0580 -1.7577 -1.0243 42 1 4.5606 -2.4279 0.5480 43 1 5.6185 -0.9978 0.4845 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787352701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:01 Heat of formation + Delta-G solvation = 28.960196 kcal Electronic energy + Delta-G solvation = -26772.254394 eV Core-core repulsion = 22854.886839 eV Total energy + Delta-G solvation = -3917.367556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86149 -40.53670 -38.85881 -36.71012 -34.91201 -34.12810 -33.90499 -32.39976 -31.58349 -29.84752 -28.80259 -27.77269 -26.47764 -25.71529 -23.07227 -22.78106 -21.61467 -20.51287 -20.33512 -19.18035 -18.30101 -17.67722 -16.86929 -16.62414 -15.94141 -15.80723 -15.53643 -15.00607 -14.64588 -14.57036 -14.21464 -13.97823 -13.85693 -13.78569 -13.51206 -13.42336 -13.22641 -12.95901 -12.67826 -12.52515 -12.36521 -12.36023 -11.95665 -11.88007 -11.48672 -10.98197 -10.91884 -10.91624 -10.44058 -10.29557 -9.50183 -9.40297 -9.37723 -9.33975 -8.89181 -8.73770 -8.68029 -7.78651 -6.13739 -4.20321 1.43377 1.82567 2.34981 2.46097 2.63923 3.24954 3.25747 3.32697 3.35928 3.81096 4.02561 4.19691 4.28714 4.33315 4.46982 4.53576 4.73756 4.83042 4.90369 4.94308 5.06601 5.12470 5.19434 5.22377 5.31669 5.38230 5.38413 5.49967 5.59236 5.61505 5.81111 5.89573 6.40361 6.48332 6.66675 6.85781 7.03655 7.44038 7.50383 7.53411 7.59759 7.86936 7.95870 8.03589 8.76302 8.91139 9.30743 9.47960 10.96586 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.002481 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.865627 B =11281.697266 C =11553.776573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.077 3.923 3 C -0.249 4.249 4 C 0.313 3.687 5 N -0.570 5.570 6 C 0.111 3.889 7 C -0.136 4.136 8 C 0.146 3.854 9 H 0.132 0.868 10 N -0.739 5.739 11 C 0.696 3.304 12 O -0.588 6.588 13 N -0.726 5.726 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.884 5.884 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.506 3.494 24 O -0.478 6.478 25 N -0.371 5.371 26 C 0.101 3.899 27 N -0.281 5.281 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.395 0.605 37 H 0.386 0.614 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 -9.199 -24.003 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.280 4.280 4 C 0.097 3.903 5 N -0.307 5.307 6 C -0.011 4.011 7 C -0.175 4.175 8 C 0.035 3.965 9 H 0.150 0.850 10 N -0.397 5.397 11 C 0.396 3.604 12 O -0.465 6.465 13 N -0.378 5.378 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.291 3.709 24 O -0.346 6.346 25 N -0.156 5.156 26 C -0.041 4.041 27 N -0.106 5.106 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.230 0.770 37 H 0.218 0.782 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.894 -9.714 -22.761 27.457 hybrid contribution 1.490 -0.204 0.293 1.532 sum -10.404 -9.918 -22.468 26.673 Atomic orbital electron populations 1.20197 0.86265 1.03322 1.03265 1.22151 0.97081 0.90299 0.99320 1.21169 0.90203 1.00256 1.16357 1.17504 0.87686 0.81649 1.03479 1.45152 1.27912 1.48535 1.09054 1.22209 0.92044 1.00442 0.86435 1.22968 0.96411 1.03665 0.94411 1.21164 0.84821 1.01148 0.89394 0.85038 1.44912 1.29006 1.42998 1.22814 1.16102 0.82558 0.82035 0.79731 1.90899 1.47505 1.34715 1.73403 1.45687 1.26965 1.41218 1.23889 1.19017 0.96532 0.92050 0.77847 1.21247 1.10434 1.20684 1.05587 0.91915 1.24952 0.97382 0.94861 0.96899 1.69991 1.38928 1.25529 1.17743 0.86354 0.82305 0.78769 0.79406 1.19704 1.20806 1.20818 1.21949 0.85084 0.79905 0.83942 1.90823 1.65646 1.57108 1.21001 1.48887 1.05970 1.04031 1.56747 1.21824 0.84124 0.94943 1.03179 1.77383 0.85329 1.22132 1.25747 0.90289 0.90245 0.90831 0.83084 0.89996 0.89630 0.89036 0.87462 0.77049 0.78186 0.95622 0.95626 0.92502 0.90597 0.89030 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.44 36.00 0.38 -0.17 16 2 C 0.08 0.89 7.21 -82.45 -0.59 0.30 16 3 C -0.25 -3.02 10.77 -39.78 -0.43 -3.45 16 4 C 0.31 3.94 6.59 -153.15 -1.01 2.93 16 5 N -0.57 -6.31 2.94 -114.23 -0.34 -6.64 16 6 C 0.11 0.68 7.28 -3.12 -0.02 0.65 16 7 C -0.14 -0.79 6.87 -25.11 -0.17 -0.96 16 8 C 0.15 1.76 3.27 -67.94 -0.22 1.54 16 9 H 0.13 1.76 7.55 -51.93 -0.39 1.37 16 10 N -0.74 -10.53 5.14 -58.68 -0.30 -10.83 16 11 C 0.70 14.50 8.57 -86.93 -0.74 13.76 16 12 O -0.59 -15.03 15.99 5.29 0.08 -14.94 16 13 N -0.73 -15.70 5.55 -66.41 -0.37 -16.07 16 14 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 15 C -0.54 -14.89 9.28 -34.44 -0.32 -15.20 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -26.49 13.29 55.43 0.74 -25.75 16 19 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.51 7.53 7.63 -10.86 -0.08 7.45 16 24 O -0.48 -9.99 17.70 5.55 0.10 -9.89 16 25 N -0.37 -4.56 4.02 -67.18 -0.27 -4.83 16 26 C 0.10 0.87 11.41 59.85 0.68 1.56 16 27 N -0.28 -3.70 12.56 33.65 0.42 -3.27 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.15 1.60 8.06 -52.48 -0.42 1.17 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.39 7.82 -51.93 -0.41 -0.02 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.40 4.18 8.44 -40.82 -0.34 3.83 16 37 H 0.39 7.01 8.34 -40.82 -0.34 6.67 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.72 8.05 -51.93 -0.42 0.31 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -40.33 373.84 -8.07 -48.40 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.08 Total: 4.86 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: -2.66 Total: 17.30 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -0.12 Total: -67.40 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.18 Total: -24.83 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -40.33 -8.07 -48.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.356 kcal (2) G-P(sol) polarization free energy of solvation -40.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds