Wall clock time and date at job start Fri Apr 10 2020 18:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39754 * 125.84076 * 2 1 4 4 C 1.36110 * 107.82976 * 180.02562 * 3 2 1 5 5 N 1.39478 * 126.21394 * 180.02562 * 4 3 2 6 6 C 1.46763 * 124.34575 * 267.95290 * 5 4 3 7 7 C 1.54482 * 105.47144 * 197.01964 * 6 5 4 8 8 C 1.54628 * 101.76572 * 334.58340 * 7 6 5 9 9 H 1.08995 * 110.48824 * 143.60951 * 8 7 6 10 10 N 1.46501 * 110.48560 * 266.12316 * 8 7 6 11 11 C 1.34779 * 119.99511 * 204.99592 * 10 8 7 12 12 O 1.21584 * 120.00464 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99739 * 180.02562 * 11 10 8 14 14 C 1.46498 * 119.99990 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47232 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00061 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99967 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99812 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00219 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47386 * 89.99604 * 19 17 15 21 21 H 1.48500 * 109.47171 * 210.00307 * 19 17 15 22 22 H 1.48511 * 109.47190 * 329.99845 * 19 17 15 23 23 C 1.34415 * 124.34860 * 87.65836 * 5 4 3 24 24 O 1.21291 * 124.94485 * 359.56674 * 23 5 4 25 25 N 1.35256 * 107.56479 * 359.97438 * 4 3 2 26 26 C 1.46505 * 126.04040 * 180.26361 * 25 4 3 27 27 N 1.30853 * 125.83641 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47531 * 269.98598 * 1 2 3 29 29 H 1.09003 * 109.47398 * 29.98390 * 1 2 3 30 30 H 1.09000 * 109.47582 * 149.98488 * 1 2 3 31 31 H 1.08003 * 126.08308 * 0.07482 * 3 2 1 32 32 H 1.09005 * 110.24646 * 316.01760 * 6 5 4 33 33 H 1.09003 * 110.24927 * 78.01847 * 6 5 4 34 34 H 1.09001 * 110.97073 * 92.70243 * 7 6 5 35 35 H 1.09005 * 110.96849 * 216.43013 * 7 6 5 36 36 H 0.96993 * 120.00608 * 24.99848 * 10 8 7 37 37 H 0.96999 * 120.00103 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46698 * 299.99792 * 14 13 11 39 39 H 1.09004 * 109.47435 * 59.99518 * 14 13 11 40 40 H 0.96996 * 120.00389 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.46955 * 267.66653 * 26 25 4 42 42 H 1.08995 * 109.47403 * 27.67334 * 26 25 4 43 43 H 1.09001 * 109.46636 * 147.67659 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6196 0.7121 -0.0006 5 7 4.7513 1.5275 -0.0003 6 6 5.4481 1.9772 -1.2111 7 6 6.8354 2.4601 -0.7328 8 6 6.5470 2.8407 0.7379 9 1 7.3985 2.5906 1.3706 10 7 6.2309 4.2671 0.8458 11 6 6.4383 4.9171 2.0081 12 8 6.8881 4.3199 2.9669 13 7 6.1470 6.2293 2.1076 14 6 6.3729 6.9360 3.3708 15 6 5.9700 8.3800 3.2176 16 1 5.5845 8.7359 2.2735 17 6 6.0933 9.2469 4.2827 18 7 5.7421 10.5072 4.1488 19 14 6.7606 8.6317 5.9153 20 1 8.2371 8.7883 5.9372 21 1 6.1626 9.4196 7.0229 22 1 6.4123 7.1979 6.0837 23 6 5.3403 2.0068 1.1088 24 8 4.9611 1.7991 2.2420 25 7 3.6091 -0.6405 -0.0004 26 6 4.7870 -1.5116 0.0046 27 7 2.2730 -1.0608 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9901 2.1596 0.0011 32 1 5.5577 1.1500 -1.9125 33 1 4.9030 2.7981 -1.6771 34 1 7.5695 1.6565 -0.7911 35 1 7.1644 3.3284 -1.3038 36 1 5.8724 4.7437 0.0809 37 1 5.7885 6.7059 1.3426 38 1 5.7767 6.4736 4.1575 39 1 7.4290 6.8799 3.6348 40 1 5.8292 11.1172 4.8979 41 1 5.0584 -1.7615 -1.0211 42 1 5.6183 -0.9959 0.4852 43 1 4.5604 -2.4257 0.5534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787352719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:04 Heat of formation + Delta-G solvation = 32.552775 kcal Electronic energy + Delta-G solvation = -26903.150329 eV Core-core repulsion = 22985.938559 eV Total energy + Delta-G solvation = -3917.211770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.90846 -40.63083 -39.00163 -36.81618 -34.96670 -34.22879 -33.93479 -32.43241 -31.65981 -29.87387 -28.87652 -28.15913 -26.86631 -25.74894 -23.02818 -22.56219 -21.58513 -20.61189 -20.39984 -19.26366 -18.47843 -17.72033 -17.07800 -16.47996 -16.10179 -15.94994 -15.42663 -15.32788 -14.74717 -14.41937 -14.24059 -14.12902 -14.04557 -13.80600 -13.62436 -13.45755 -13.24575 -13.05973 -12.73518 -12.56229 -12.40532 -12.37952 -12.27615 -12.01346 -11.71849 -11.00811 -10.97100 -10.77340 -10.52776 -9.94908 -9.66962 -9.47670 -9.45639 -9.40212 -8.98901 -8.77726 -8.74108 -8.07428 -6.19786 -4.21746 1.40394 1.83265 2.09861 2.44452 2.68594 3.21567 3.30066 3.37452 3.46966 3.65891 3.93537 4.15968 4.18541 4.36202 4.36615 4.53218 4.71106 4.78543 4.84751 4.89230 4.98061 5.06568 5.16077 5.21039 5.31431 5.34210 5.38553 5.49124 5.49747 5.61634 5.78669 5.87675 6.38780 6.42741 6.56108 6.70727 6.81675 7.11858 7.20179 7.35931 7.41425 7.48599 7.88107 8.26654 8.64045 8.79790 9.13688 9.41189 10.92116 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.002765 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.533920 B =10122.938583 C =10731.520996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.078 3.922 3 C -0.247 4.247 4 C 0.311 3.689 5 N -0.566 5.566 6 C 0.107 3.893 7 C -0.140 4.140 8 C 0.146 3.854 9 H 0.129 0.871 10 N -0.737 5.737 11 C 0.695 3.305 12 O -0.587 6.587 13 N -0.718 5.718 14 C 0.238 3.762 15 C -0.542 4.542 16 H 0.079 0.921 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C 0.509 3.491 24 O -0.481 6.481 25 N -0.373 5.373 26 C 0.101 3.899 27 N -0.281 5.281 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.398 0.602 37 H 0.393 0.607 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 -21.781 -17.672 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.278 4.278 4 C 0.095 3.905 5 N -0.302 5.302 6 C -0.015 4.015 7 C -0.179 4.179 8 C 0.035 3.965 9 H 0.147 0.853 10 N -0.396 5.396 11 C 0.394 3.606 12 O -0.465 6.465 13 N -0.370 5.370 14 C 0.116 3.884 15 C -0.580 4.580 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.531 5.531 19 Si 0.702 3.298 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.184 1.184 23 C 0.294 3.706 24 O -0.349 6.349 25 N -0.158 5.158 26 C -0.041 4.041 27 N -0.106 5.106 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.169 0.831 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.233 0.767 37 H 0.226 0.774 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.140 -23.592 -15.947 28.557 hybrid contribution 0.058 1.121 0.095 1.127 sum -2.082 -22.471 -15.852 27.578 Atomic orbital electron populations 1.20206 0.86214 1.03388 1.03306 1.22160 0.97109 0.90257 0.99195 1.21198 0.90225 1.00335 1.16012 1.17486 0.87666 0.81639 1.03689 1.45177 1.27666 1.48395 1.09009 1.22266 0.92436 1.00559 0.86273 1.23004 0.96374 1.03789 0.94707 1.21216 0.96024 0.81304 0.97951 0.85341 1.44881 1.72482 1.07795 1.14487 1.16114 0.79389 0.82505 0.82566 1.90915 1.51622 1.67118 1.36819 1.45370 1.67642 1.06869 1.17153 1.19396 0.96344 0.91775 0.80933 1.21074 1.45098 0.91346 1.00496 0.90274 1.24769 0.94428 0.94572 0.98805 1.69874 1.47217 1.03712 1.32252 0.86826 0.79685 0.80009 0.83271 1.19832 1.20913 1.18355 1.21901 0.85208 0.79524 0.83952 1.90814 1.66013 1.57164 1.20890 1.48878 1.05983 1.03983 1.56924 1.21821 0.84129 0.94901 1.03221 1.77383 0.85296 1.22100 1.25816 0.90261 0.90169 0.90811 0.83066 0.89908 0.89843 0.88157 0.87390 0.76720 0.77409 0.95788 0.96235 0.92264 0.90599 0.89861 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.44 36.00 0.38 -0.19 16 2 C 0.08 0.91 7.21 -82.45 -0.59 0.32 16 3 C -0.25 -3.05 10.77 -39.78 -0.43 -3.48 16 4 C 0.31 3.86 6.59 -153.16 -1.01 2.85 16 5 N -0.57 -6.09 2.94 -114.22 -0.34 -6.43 16 6 C 0.11 0.63 7.28 -3.12 -0.02 0.61 16 7 C -0.14 -0.75 6.78 -25.10 -0.17 -0.92 16 8 C 0.15 1.67 3.29 -67.93 -0.22 1.44 16 9 H 0.13 1.66 7.55 -51.93 -0.39 1.27 16 10 N -0.74 -9.73 5.09 -58.68 -0.30 -10.03 16 11 C 0.69 13.54 8.57 -86.91 -0.74 12.80 16 12 O -0.59 -14.12 15.99 5.29 0.08 -14.04 16 13 N -0.72 -14.63 5.55 -66.41 -0.37 -15.00 16 14 C 0.24 5.96 4.50 -5.20 -0.02 5.94 16 15 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 16 H 0.08 2.25 7.84 -52.49 -0.41 1.83 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 19 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 23 C 0.51 7.31 7.61 -10.86 -0.08 7.23 16 24 O -0.48 -9.71 17.71 5.55 0.10 -9.61 16 25 N -0.37 -4.42 4.02 -67.17 -0.27 -4.69 16 26 C 0.10 0.79 11.41 59.85 0.68 1.48 16 27 N -0.28 -3.62 12.56 33.65 0.42 -3.20 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.15 1.71 8.06 -52.48 -0.42 1.28 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.40 3.82 8.65 -40.82 -0.35 3.47 16 37 H 0.39 6.85 8.34 -40.82 -0.34 6.51 16 38 H 0.02 0.65 7.20 -51.93 -0.37 0.28 16 39 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.63 8.05 -51.93 -0.42 0.22 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -39.91 370.56 -7.73 -47.64 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.07 Total: 3.56 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: -2.68 Total: 14.94 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.08 Total: -65.16 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.18 Total: -23.65 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.91 -7.73 -47.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.192 kcal (2) G-P(sol) polarization free energy of solvation -39.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds