Wall clock time and date at job start Fri Apr 10 2020 18:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39754 * 125.84076 * 2 1 4 4 C 1.36110 * 107.82976 * 180.02562 * 3 2 1 5 5 N 1.39478 * 126.21394 * 180.02562 * 4 3 2 6 6 C 1.46763 * 124.34575 * 267.95290 * 5 4 3 7 7 C 1.54482 * 105.47144 * 197.01964 * 6 5 4 8 8 C 1.54628 * 101.76572 * 334.58340 * 7 6 5 9 9 H 1.08995 * 110.48824 * 143.60951 * 8 7 6 10 10 N 1.46501 * 110.48560 * 266.12316 * 8 7 6 11 11 C 1.34779 * 119.99511 * 204.99592 * 10 8 7 12 12 O 1.21584 * 120.00464 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99739 * 180.02562 * 11 10 8 14 14 C 1.46498 * 119.99990 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47232 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00061 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99967 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99812 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00219 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47386 * 89.99604 * 19 17 15 21 21 H 1.48500 * 109.47171 * 210.00307 * 19 17 15 22 22 H 1.48511 * 109.47190 * 329.99845 * 19 17 15 23 23 C 1.34415 * 124.34860 * 87.65836 * 5 4 3 24 24 O 1.21291 * 124.94485 * 359.56674 * 23 5 4 25 25 N 1.35256 * 107.56479 * 359.97438 * 4 3 2 26 26 C 1.46505 * 126.04040 * 180.26361 * 25 4 3 27 27 N 1.30853 * 125.83641 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47531 * 269.98598 * 1 2 3 29 29 H 1.09003 * 109.47398 * 29.98390 * 1 2 3 30 30 H 1.09000 * 109.47582 * 149.98488 * 1 2 3 31 31 H 1.08003 * 126.08308 * 0.07482 * 3 2 1 32 32 H 1.09005 * 110.24646 * 316.01760 * 6 5 4 33 33 H 1.09003 * 110.24927 * 78.01847 * 6 5 4 34 34 H 1.09001 * 110.97073 * 92.70243 * 7 6 5 35 35 H 1.09005 * 110.96849 * 216.43013 * 7 6 5 36 36 H 0.96993 * 120.00608 * 24.99848 * 10 8 7 37 37 H 0.96999 * 120.00103 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46698 * 299.99792 * 14 13 11 39 39 H 1.09004 * 109.47435 * 59.99518 * 14 13 11 40 40 H 0.96996 * 120.00389 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.46955 * 267.66653 * 26 25 4 42 42 H 1.08995 * 109.47403 * 27.67334 * 26 25 4 43 43 H 1.09001 * 109.46636 * 147.67659 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6196 0.7121 -0.0006 5 7 4.7513 1.5275 -0.0003 6 6 5.4481 1.9772 -1.2111 7 6 6.8354 2.4601 -0.7328 8 6 6.5470 2.8407 0.7379 9 1 7.3985 2.5906 1.3706 10 7 6.2309 4.2671 0.8458 11 6 6.4383 4.9171 2.0081 12 8 6.8881 4.3199 2.9669 13 7 6.1470 6.2293 2.1076 14 6 6.3729 6.9360 3.3708 15 6 5.9700 8.3800 3.2176 16 1 5.5845 8.7359 2.2735 17 6 6.0933 9.2469 4.2827 18 7 5.7421 10.5072 4.1488 19 14 6.7606 8.6317 5.9153 20 1 8.2371 8.7883 5.9372 21 1 6.1626 9.4196 7.0229 22 1 6.4123 7.1979 6.0837 23 6 5.3403 2.0068 1.1088 24 8 4.9611 1.7991 2.2420 25 7 3.6091 -0.6405 -0.0004 26 6 4.7870 -1.5116 0.0046 27 7 2.2730 -1.0608 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3634 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9901 2.1596 0.0011 32 1 5.5577 1.1500 -1.9125 33 1 4.9030 2.7981 -1.6771 34 1 7.5695 1.6565 -0.7911 35 1 7.1644 3.3284 -1.3038 36 1 5.8724 4.7437 0.0809 37 1 5.7885 6.7059 1.3426 38 1 5.7767 6.4736 4.1575 39 1 7.4290 6.8799 3.6348 40 1 5.8292 11.1172 4.8979 41 1 5.0584 -1.7615 -1.0211 42 1 5.6183 -0.9959 0.4852 43 1 4.5604 -2.4257 0.5534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787352719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:03 Heat of formation + Delta-G solvation = 0.846495 kcal Electronic energy + Delta-G solvation = -26904.525216 eV Core-core repulsion = 22985.938559 eV Total energy + Delta-G solvation = -3918.586657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.80367 -41.66713 -40.46130 -37.91122 -36.34641 -35.78308 -34.84512 -34.40832 -32.69698 -30.58324 -30.02376 -29.52896 -28.03555 -26.47093 -24.35569 -23.74348 -22.66773 -22.09994 -21.34988 -20.18375 -20.07901 -18.65670 -18.35499 -18.18446 -17.16836 -16.91300 -16.64628 -16.50007 -16.12507 -15.98952 -15.34573 -15.22555 -15.11051 -14.84748 -14.63252 -14.43160 -14.40212 -14.22075 -14.16974 -13.78137 -13.47612 -13.18015 -13.07177 -13.03362 -12.72677 -12.56174 -12.46789 -11.94492 -11.86079 -11.74018 -11.64744 -11.34736 -10.91184 -10.47521 -10.28406 -10.17866 -9.76550 -9.64462 -8.39695 -6.45813 0.50394 0.89862 1.09055 1.32568 1.35433 1.48931 1.56612 1.87857 1.95327 2.17127 2.28898 2.96042 3.23211 3.35750 3.42101 3.44628 3.73750 4.01321 4.06184 4.23938 4.25759 4.39455 4.47735 4.48881 4.55933 4.71990 4.75373 4.80077 4.91315 4.94735 4.99560 5.04509 5.06421 5.10726 5.24994 5.33516 5.52164 5.58885 5.66469 5.91408 5.96138 6.24324 6.53817 6.55945 6.85240 7.12818 7.23278 7.61733 8.74873 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.002765 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.533920 B =10122.938583 C =10731.520996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.072 3.928 3 C -0.269 4.269 4 C 0.297 3.703 5 N -0.553 5.553 6 C 0.098 3.902 7 C -0.116 4.116 8 C 0.141 3.859 9 H 0.112 0.888 10 N -0.712 5.712 11 C 0.694 3.306 12 O -0.635 6.635 13 N -0.717 5.717 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.029 3.971 18 N -0.929 5.929 19 Si 0.933 3.067 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.267 1.267 23 C 0.503 3.497 24 O -0.555 6.555 25 N -0.377 5.377 26 C 0.093 3.907 27 N -0.307 5.307 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.420 0.580 37 H 0.408 0.592 38 H 0.002 0.998 39 H 0.013 0.987 40 H 0.273 0.727 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 -22.779 -20.109 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.300 4.300 4 C 0.080 3.920 5 N -0.287 5.287 6 C -0.021 4.021 7 C -0.153 4.153 8 C 0.030 3.970 9 H 0.130 0.870 10 N -0.372 5.372 11 C 0.393 3.607 12 O -0.516 6.516 13 N -0.370 5.370 14 C 0.127 3.873 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.171 4.171 18 N -0.568 5.568 19 Si 0.757 3.243 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.191 1.191 23 C 0.289 3.711 24 O -0.428 6.428 25 N -0.162 5.162 26 C -0.047 4.047 27 N -0.132 5.132 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.173 0.827 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.147 0.853 35 H 0.157 0.843 36 H 0.258 0.742 37 H 0.243 0.757 38 H 0.020 0.980 39 H 0.031 0.969 40 H 0.082 0.918 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.413 -24.609 -18.531 30.838 hybrid contribution -0.216 1.366 0.740 1.569 sum -1.629 -23.243 -17.791 29.316 Atomic orbital electron populations 1.20334 0.83951 1.04800 1.03868 1.22715 0.98661 0.89708 0.98228 1.21443 0.90737 1.00874 1.16929 1.17724 0.88227 0.82296 1.03734 1.45253 1.26766 1.46946 1.09736 1.22732 0.92268 1.02362 0.84761 1.23111 0.96728 1.05828 0.89665 1.21461 0.94084 0.79269 1.02137 0.87046 1.44595 1.71047 1.08557 1.12987 1.16271 0.78821 0.81969 0.83601 1.90886 1.53623 1.67978 1.39115 1.45039 1.68221 1.07519 1.16260 1.18950 0.95278 0.90589 0.82502 1.21249 1.44411 0.92497 0.99907 0.91825 1.25517 0.94800 0.94723 1.02075 1.69962 1.48526 1.04796 1.33531 0.85924 0.79709 0.78958 0.79705 1.18579 1.19824 1.19148 1.22434 0.85750 0.79329 0.83584 1.90772 1.68139 1.60016 1.23898 1.49157 1.06489 1.04180 1.56372 1.22107 0.82915 0.94458 1.05250 1.77333 0.86020 1.22921 1.26922 0.89996 0.88385 0.89780 0.82749 0.86964 0.87950 0.85272 0.84290 0.74185 0.75667 0.97972 0.96934 0.91816 0.87565 0.89795 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.44 71.23 0.74 -0.30 16 2 C 0.07 1.64 7.21 43.07 0.31 1.96 16 3 C -0.27 -6.55 10.77 22.14 0.24 -6.31 16 4 C 0.30 7.11 6.59 131.32 0.87 7.97 16 5 N -0.55 -10.94 2.94 -633.88 -1.87 -12.80 16 6 C 0.10 0.75 7.28 86.83 0.63 1.38 16 7 C -0.12 -0.70 6.78 31.65 0.21 -0.49 16 8 C 0.14 2.97 3.29 44.99 0.15 3.12 16 9 H 0.11 2.82 7.55 -2.39 -0.02 2.80 16 10 N -0.71 -17.57 5.09 -457.83 -2.33 -19.90 16 11 C 0.69 26.85 8.57 179.05 1.53 28.38 16 12 O -0.63 -31.11 15.99 -3.98 -0.06 -31.18 16 13 N -0.72 -29.00 5.55 -482.29 -2.68 -31.68 16 14 C 0.25 12.68 4.50 85.63 0.38 13.07 16 15 C -0.54 -30.10 9.83 25.60 0.25 -29.85 16 16 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 17 C 0.03 1.67 5.47 84.66 0.46 2.14 16 18 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 19 Si 0.93 45.03 27.47 68.60 1.88 46.92 16 20 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.27 -13.14 6.54 99.48 0.65 -12.49 16 23 C 0.50 14.25 7.61 87.90 0.67 14.92 16 24 O -0.55 -23.34 17.71 -3.06 -0.05 -23.39 16 25 N -0.38 -8.60 4.02 -366.44 -1.47 -10.07 16 26 C 0.09 1.33 11.41 127.77 1.46 2.78 16 27 N -0.31 -7.76 12.56 -47.45 -0.60 -8.36 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.14 0.13 8.07 -2.38 -0.02 0.11 16 36 H 0.42 6.77 8.65 -92.71 -0.80 5.96 16 37 H 0.41 13.84 8.34 -92.71 -0.77 13.07 16 38 H 0.00 0.13 7.20 -2.38 -0.02 0.11 16 39 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 40 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 1.17 8.05 -2.39 -0.02 1.16 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -91.58 370.56 0.46 -91.12 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.57 Total: 15.85 kcal Atomic # 6 Polarization: 30.86 SS G_CDS: 7.91 Total: 38.77 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -8.65 Total: -138.09 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.12 Total: -54.57 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -91.58 0.46 -91.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.968 kcal (2) G-P(sol) polarization free energy of solvation -91.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds