Wall clock time and date at job start Fri Apr 10 2020 18:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48506 * 109.47023 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47236 * 119.99714 * 3 2 1 6 6 H 1.48496 * 109.47413 * 240.00086 * 3 2 1 7 7 C 1.38806 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00141 * 212.50681 * 7 2 1 9 9 N 1.36936 * 119.99943 * 32.51303 * 7 2 1 10 10 C 1.46934 * 120.64281 * 25.46705 * 9 7 2 11 11 C 1.53629 * 108.53468 * 126.30036 * 10 9 7 12 12 C 1.52997 * 109.27485 * 54.80593 * 11 10 9 13 13 C 1.52985 * 109.63543 * 298.65651 * 12 11 10 14 14 C 1.46933 * 120.64191 * 205.75023 * 9 7 2 15 15 C 1.53259 * 109.36101 * 178.71456 * 12 11 10 16 16 N 1.47152 * 108.40783 * 187.91699 * 15 12 11 17 17 C 1.34779 * 120.98284 * 230.44754 * 16 15 12 18 18 O 1.21616 * 120.00117 * 359.82503 * 17 16 15 19 19 C 1.47238 * 119.99781 * 179.81818 * 17 16 15 20 20 C 1.37000 * 127.18807 * 203.69619 * 19 17 16 21 21 N 1.33320 * 106.37571 * 180.02562 * 20 19 17 22 22 N 1.28519 * 109.43488 * 359.97438 * 21 20 19 23 23 N 1.28716 * 110.63923 * 359.71718 * 22 21 20 24 24 H 0.96995 * 126.04229 * 180.29711 * 23 22 21 25 25 C 1.47147 * 118.02901 * 50.47344 * 16 15 12 26 26 C 1.53298 * 108.37316 * 309.40870 * 25 16 15 27 27 O 1.42895 * 109.54792 * 58.91446 * 12 11 10 28 28 H 0.97005 * 120.00009 * 185.78880 * 1 2 3 29 29 H 1.08998 * 109.58757 * 246.12950 * 10 9 7 30 30 H 1.08998 * 109.58637 * 6.56197 * 10 9 7 31 31 H 1.08994 * 109.62865 * 294.80403 * 11 10 9 32 32 H 1.09000 * 109.44408 * 174.70066 * 11 10 9 33 33 H 1.09000 * 109.49107 * 301.24814 * 13 12 11 34 34 H 1.09000 * 109.51370 * 181.18297 * 13 12 11 35 35 H 1.09002 * 109.58566 * 353.43658 * 14 9 7 36 36 H 1.09004 * 109.58407 * 113.71850 * 14 9 7 37 37 H 1.09003 * 109.67715 * 307.64728 * 15 12 11 38 38 H 1.08997 * 109.67776 * 68.14923 * 15 12 11 39 39 H 1.08004 * 126.81592 * 359.97438 * 20 19 17 40 40 H 1.09003 * 109.68406 * 69.12915 * 25 16 15 41 41 H 1.08994 * 109.68564 * 189.68456 * 25 16 15 42 42 H 1.09008 * 109.50889 * 172.27761 * 26 25 16 43 43 H 1.09001 * 109.50997 * 292.37246 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9633 -1.2751 0.5032 9 7 1.4865 -2.2953 -0.6364 10 6 0.5422 -2.1321 -1.7502 11 6 1.0696 -2.9225 -2.9574 12 6 1.3089 -4.3760 -2.5440 13 6 2.3620 -4.4284 -1.4355 14 6 1.8533 -3.6544 -0.2152 15 6 1.8046 -5.1736 -3.7551 16 7 1.8453 -6.5981 -3.3882 17 6 2.9487 -7.3401 -3.6087 18 8 3.9291 -6.8345 -4.1208 19 6 2.9671 -8.7626 -3.2294 20 6 4.0668 -9.5327 -2.9563 21 7 3.6096 -10.7499 -2.6618 22 7 2.3268 -10.7553 -2.7399 23 7 1.8874 -9.5913 -3.0697 24 1 0.9567 -9.3449 -3.1873 25 6 0.6456 -7.1886 -2.7741 26 6 0.2088 -6.2933 -1.6089 27 8 0.0870 -4.9457 -2.0704 28 1 -0.4850 -0.8358 0.0847 29 1 -0.4361 -2.5144 -1.4588 30 1 0.4620 -1.0765 -2.0095 31 1 2.0058 -2.4834 -3.3018 32 1 0.3348 -2.8894 -3.7618 33 1 3.2881 -3.9775 -1.7921 34 1 2.5463 -5.4660 -1.1571 35 1 2.6388 -3.6037 0.5388 36 1 0.9796 -4.1564 0.2004 37 1 1.1228 -5.0298 -4.5933 38 1 2.8034 -4.8368 -4.0326 39 1 5.0994 -9.2167 -2.9765 40 1 -0.1542 -7.2464 -3.5125 41 1 0.8765 -8.1872 -2.4034 42 1 -0.7532 -6.6359 -1.2274 43 1 0.9534 -6.3410 -0.8143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949132588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:11 Heat of formation + Delta-G solvation = 72.632590 kcal Electronic energy + Delta-G solvation = -28580.797087 eV Core-core repulsion = 24665.323309 eV Total energy + Delta-G solvation = -3915.473779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.87526 -40.91696 -39.03282 -36.67179 -35.26002 -33.96433 -33.26027 -31.88789 -31.27419 -29.99578 -29.15587 -27.31716 -24.76483 -24.60917 -23.35619 -23.18977 -22.47715 -21.56546 -20.55249 -19.22011 -18.48558 -17.60175 -17.48239 -16.92292 -16.52789 -15.84679 -15.63096 -15.16223 -15.08993 -14.60071 -14.44320 -14.18369 -13.92261 -13.72373 -13.50174 -13.43502 -12.71760 -12.61296 -12.26679 -12.14162 -11.87072 -11.70900 -11.65058 -11.20307 -11.05035 -10.81408 -10.71487 -10.58365 -10.54099 -10.40685 -10.14339 -10.01008 -9.95447 -9.67572 -9.41725 -8.82795 -8.30981 -6.93476 -6.14675 -3.19700 0.47246 1.84096 1.93272 2.26201 2.63117 3.49070 3.52996 3.57059 3.68411 3.70842 4.10479 4.22791 4.33200 4.54858 4.58384 4.63831 4.74177 4.76732 4.93656 5.06649 5.16090 5.28130 5.37821 5.44426 5.50654 5.55644 5.59426 5.74239 5.90628 6.03389 6.06952 6.08752 6.23705 6.30590 6.36193 6.57663 6.72953 6.76697 6.97812 7.17954 7.24756 7.49913 7.82146 7.99891 8.54373 9.08553 9.82850 10.28667 11.15119 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.027510 B = 0.003253 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.554370 B = 8604.522624 C = 8820.784480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.018 4.018 3 Si 1.055 2.945 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.360 4.360 8 H 0.056 0.944 9 N -0.596 5.596 10 C 0.160 3.840 11 C -0.121 4.121 12 C 0.116 3.884 13 C -0.153 4.153 14 C 0.154 3.846 15 C 0.091 3.909 16 N -0.603 5.603 17 C 0.595 3.405 18 O -0.508 6.508 19 C -0.060 4.060 20 C 0.032 3.968 21 N -0.266 5.266 22 N -0.051 5.051 23 N -0.381 5.381 24 H 0.453 0.547 25 C 0.052 3.948 26 C 0.046 3.954 27 O -0.353 6.353 28 H 0.269 0.731 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.205 0.795 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -17.144 -7.978 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.222 4.222 3 Si 0.884 3.116 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.488 4.488 8 H 0.074 0.926 9 N -0.319 5.319 10 C 0.033 3.967 11 C -0.161 4.161 12 C 0.076 3.924 13 C -0.193 4.193 14 C 0.028 3.972 15 C -0.031 4.031 16 N -0.337 5.337 17 C 0.380 3.620 18 O -0.382 6.382 19 C -0.194 4.194 20 C -0.127 4.127 21 N -0.132 5.132 22 N -0.033 5.033 23 N -0.115 5.115 24 H 0.307 0.693 25 C -0.072 4.072 26 C -0.032 4.032 27 O -0.271 6.271 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.222 0.778 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.281 -16.534 -7.943 18.345 hybrid contribution 0.066 -0.839 -0.202 0.866 sum 0.347 -17.374 -8.145 19.191 Atomic orbital electron populations 1.70787 1.06858 1.30197 1.46361 1.25729 0.96169 1.01377 0.98892 0.83685 0.75129 0.76447 0.76322 1.21158 1.22001 1.22026 1.19902 1.02332 0.90517 1.36061 0.92642 1.44130 1.53024 1.00536 1.34231 1.20899 0.91494 0.98901 0.85372 1.22156 1.02059 0.91387 1.00460 1.21815 0.84848 0.93900 0.91800 1.22530 0.98688 0.99710 0.98328 1.20748 0.97016 0.86608 0.92861 1.22623 1.04462 0.77771 0.98222 1.48037 1.13038 1.11637 1.60982 1.16809 0.83225 0.82981 0.79013 1.90887 1.33253 1.71303 1.42708 1.22357 0.88486 0.94803 1.13760 1.23944 1.00397 0.88602 0.99745 1.75010 1.00790 1.20162 1.17211 1.78221 1.07044 1.03142 1.14853 1.46556 1.11032 1.07978 1.45930 0.69299 1.22963 0.88262 0.97770 0.98186 1.22864 1.02844 0.83326 0.94176 1.88096 1.31611 1.25251 1.82185 0.92066 0.95584 0.90381 0.90479 0.91992 0.90941 0.93070 0.92856 0.96428 0.90222 0.87605 0.77806 0.89224 0.90106 0.87522 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 12.47 55.49 0.69 -25.78 16 2 C -0.02 -0.51 4.47 -17.44 -0.08 -0.59 16 3 Si 1.05 24.73 30.02 -169.99 -5.10 19.63 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.36 -9.84 9.42 -15.06 -0.14 -9.99 16 8 H 0.06 1.54 7.99 -52.49 -0.42 1.12 16 9 N -0.60 -14.42 2.86 -172.04 -0.49 -14.91 16 10 C 0.16 3.56 4.68 -3.48 -0.02 3.54 16 11 C -0.12 -2.09 5.12 -26.41 -0.14 -2.22 16 12 C 0.12 1.74 0.68 -90.50 -0.06 1.68 16 13 C -0.15 -2.54 4.33 -26.64 -0.12 -2.65 16 14 C 0.15 3.15 6.28 -3.70 -0.02 3.13 16 15 C 0.09 1.13 5.29 -3.55 -0.02 1.11 16 16 N -0.60 -6.40 2.52 -173.64 -0.44 -6.84 16 17 C 0.59 6.95 7.68 -12.60 -0.10 6.86 16 18 O -0.51 -7.55 16.47 5.26 0.09 -7.46 16 19 C -0.06 -0.59 6.59 -82.33 -0.54 -1.14 16 20 C 0.03 0.33 11.94 -17.35 -0.21 0.12 16 21 N -0.27 -3.05 12.35 30.47 0.38 -2.68 16 22 N -0.05 -0.52 13.35 60.35 0.81 0.28 16 23 N -0.38 -3.01 5.86 33.31 0.20 -2.82 16 24 H 0.45 2.10 6.10 -190.33 -1.16 0.94 16 25 C 0.05 0.40 5.79 -3.53 -0.02 0.38 16 26 C 0.05 0.48 6.60 37.31 0.25 0.72 16 27 O -0.35 -5.17 9.00 -35.23 -0.32 -5.49 16 28 H 0.27 8.00 7.36 -40.82 -0.30 7.70 16 29 H 0.03 0.61 7.74 -51.93 -0.40 0.21 16 30 H 0.08 1.96 6.37 -51.93 -0.33 1.63 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.05 0.77 6.16 -51.93 -0.32 0.45 16 35 H 0.05 1.12 7.93 -51.93 -0.41 0.70 16 36 H 0.02 0.37 7.83 -51.93 -0.41 -0.04 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.43 7.08 -51.93 -0.37 1.06 16 39 H 0.21 1.66 8.06 -52.48 -0.42 1.23 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.46 3.79 -51.93 -0.20 0.26 16 42 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 43 H 0.06 0.73 6.29 -51.93 -0.33 0.40 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -33.22 336.63 -6.73 -39.96 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.40 Total: 0.09 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.21 Total: 0.95 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 1.14 Total: -52.75 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.23 Total: -12.95 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.10 Total: 19.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.22 -6.73 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949132588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.588 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds