Wall clock time and date at job start Fri Apr 10 2020 18:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48506 * 109.47023 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47236 * 119.99714 * 3 2 1 6 6 H 1.48496 * 109.47413 * 240.00086 * 3 2 1 7 7 C 1.38806 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00141 * 212.50681 * 7 2 1 9 9 N 1.36936 * 119.99943 * 32.51303 * 7 2 1 10 10 C 1.46934 * 120.64281 * 25.46705 * 9 7 2 11 11 C 1.53629 * 108.53468 * 126.30036 * 10 9 7 12 12 C 1.52997 * 109.27485 * 54.80593 * 11 10 9 13 13 C 1.52985 * 109.63543 * 298.65651 * 12 11 10 14 14 C 1.46933 * 120.64191 * 205.75023 * 9 7 2 15 15 C 1.53259 * 109.36101 * 178.71456 * 12 11 10 16 16 N 1.47152 * 108.40783 * 187.91699 * 15 12 11 17 17 C 1.34779 * 120.98284 * 230.44754 * 16 15 12 18 18 O 1.21616 * 120.00117 * 359.82503 * 17 16 15 19 19 C 1.47238 * 119.99781 * 179.81818 * 17 16 15 20 20 C 1.37000 * 127.18807 * 203.69619 * 19 17 16 21 21 N 1.33320 * 106.37571 * 180.02562 * 20 19 17 22 22 N 1.28519 * 109.43488 * 359.97438 * 21 20 19 23 23 N 1.28716 * 110.63923 * 359.71718 * 22 21 20 24 24 H 0.96995 * 126.04229 * 180.29711 * 23 22 21 25 25 C 1.47147 * 118.02901 * 50.47344 * 16 15 12 26 26 C 1.53298 * 108.37316 * 309.40870 * 25 16 15 27 27 O 1.42895 * 109.54792 * 58.91446 * 12 11 10 28 28 H 0.97005 * 120.00009 * 185.78880 * 1 2 3 29 29 H 1.08998 * 109.58757 * 246.12950 * 10 9 7 30 30 H 1.08998 * 109.58637 * 6.56197 * 10 9 7 31 31 H 1.08994 * 109.62865 * 294.80403 * 11 10 9 32 32 H 1.09000 * 109.44408 * 174.70066 * 11 10 9 33 33 H 1.09000 * 109.49107 * 301.24814 * 13 12 11 34 34 H 1.09000 * 109.51370 * 181.18297 * 13 12 11 35 35 H 1.09002 * 109.58566 * 353.43658 * 14 9 7 36 36 H 1.09004 * 109.58407 * 113.71850 * 14 9 7 37 37 H 1.09003 * 109.67715 * 307.64728 * 15 12 11 38 38 H 1.08997 * 109.67776 * 68.14923 * 15 12 11 39 39 H 1.08004 * 126.81592 * 359.97438 * 20 19 17 40 40 H 1.09003 * 109.68406 * 69.12915 * 25 16 15 41 41 H 1.08994 * 109.68564 * 189.68456 * 25 16 15 42 42 H 1.09008 * 109.50889 * 172.27761 * 26 25 16 43 43 H 1.09001 * 109.50997 * 292.37246 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9633 -1.2751 0.5032 9 7 1.4865 -2.2953 -0.6364 10 6 0.5422 -2.1321 -1.7502 11 6 1.0696 -2.9225 -2.9574 12 6 1.3089 -4.3760 -2.5440 13 6 2.3620 -4.4284 -1.4355 14 6 1.8533 -3.6544 -0.2152 15 6 1.8046 -5.1736 -3.7551 16 7 1.8453 -6.5981 -3.3882 17 6 2.9487 -7.3401 -3.6087 18 8 3.9291 -6.8345 -4.1208 19 6 2.9671 -8.7626 -3.2294 20 6 4.0668 -9.5327 -2.9563 21 7 3.6096 -10.7499 -2.6618 22 7 2.3268 -10.7553 -2.7399 23 7 1.8874 -9.5913 -3.0697 24 1 0.9567 -9.3449 -3.1873 25 6 0.6456 -7.1886 -2.7741 26 6 0.2088 -6.2933 -1.6089 27 8 0.0870 -4.9457 -2.0704 28 1 -0.4850 -0.8358 0.0847 29 1 -0.4361 -2.5144 -1.4588 30 1 0.4620 -1.0765 -2.0095 31 1 2.0058 -2.4834 -3.3018 32 1 0.3348 -2.8894 -3.7618 33 1 3.2881 -3.9775 -1.7921 34 1 2.5463 -5.4660 -1.1571 35 1 2.6388 -3.6037 0.5388 36 1 0.9796 -4.1564 0.2004 37 1 1.1228 -5.0298 -4.5933 38 1 2.8034 -4.8368 -4.0326 39 1 5.0994 -9.2167 -2.9765 40 1 -0.1542 -7.2464 -3.5125 41 1 0.8765 -8.1872 -2.4034 42 1 -0.7532 -6.6359 -1.2274 43 1 0.9534 -6.3410 -0.8143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949132588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:11 Heat of formation + Delta-G solvation = 48.431710 kcal Electronic energy + Delta-G solvation = -28581.846516 eV Core-core repulsion = 24665.323309 eV Total energy + Delta-G solvation = -3916.523207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.63638 -41.94290 -40.13403 -38.11983 -36.33167 -34.98604 -34.57737 -33.07852 -32.51614 -31.57064 -30.28526 -28.59566 -26.23699 -25.53604 -24.63328 -24.04602 -23.94136 -22.72168 -21.70214 -20.58312 -19.45695 -19.26903 -18.37822 -17.78440 -17.47596 -16.94031 -16.83323 -16.32337 -16.08921 -15.88866 -15.55669 -15.47093 -15.34864 -15.20915 -15.08475 -14.64736 -13.84861 -13.68374 -13.45363 -13.37346 -13.30957 -13.02309 -12.66423 -12.52747 -12.42733 -12.12855 -12.05108 -12.00859 -11.89701 -11.85107 -11.71815 -11.38597 -11.19475 -11.00329 -10.74793 -10.39340 -9.78938 -8.94886 -8.31336 -5.34432 -0.30543 1.05575 1.18346 1.44941 1.58921 1.64921 1.81910 1.84977 2.61562 2.66306 2.88298 3.14826 3.35025 3.41665 3.51506 3.60635 3.68251 3.76459 3.79551 3.87084 3.99828 4.06067 4.27275 4.32316 4.47215 4.50399 4.55059 4.59286 4.72980 4.76845 4.78557 4.82957 4.87972 4.97627 5.03206 5.15259 5.17507 5.44189 5.48126 5.84637 5.89307 6.17883 6.36370 6.61696 7.04463 7.05464 7.78541 8.23523 8.94875 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.027510 B = 0.003253 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.554370 B = 8604.522624 C = 8820.784480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.066 4.066 3 Si 1.106 2.894 4 H -0.291 1.291 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.367 4.367 8 H 0.045 0.955 9 N -0.614 5.614 10 C 0.168 3.832 11 C -0.113 4.113 12 C 0.124 3.876 13 C -0.139 4.139 14 C 0.153 3.847 15 C 0.101 3.899 16 N -0.601 5.601 17 C 0.599 3.401 18 O -0.544 6.544 19 C -0.062 4.062 20 C 0.030 3.970 21 N -0.291 5.291 22 N -0.055 5.055 23 N -0.357 5.357 24 H 0.468 0.532 25 C 0.057 3.943 26 C 0.037 3.963 27 O -0.374 6.374 28 H 0.253 0.747 29 H 0.009 0.991 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.218 0.782 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -18.818 -9.180 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.264 4.264 3 Si 0.930 3.070 4 H -0.217 1.217 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.496 4.496 8 H 0.063 0.937 9 N -0.338 5.338 10 C 0.042 3.958 11 C -0.152 4.152 12 C 0.084 3.916 13 C -0.178 4.178 14 C 0.028 3.972 15 C -0.021 4.021 16 N -0.334 5.334 17 C 0.385 3.615 18 O -0.419 6.419 19 C -0.196 4.196 20 C -0.129 4.129 21 N -0.156 5.156 22 N -0.037 5.037 23 N -0.094 5.094 24 H 0.325 0.675 25 C -0.066 4.066 26 C -0.040 4.040 27 O -0.293 6.293 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.235 0.765 40 H 0.140 0.860 41 H 0.120 0.880 42 H 0.151 0.849 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.123 -18.268 -9.140 20.427 hybrid contribution 0.042 -0.397 0.261 0.477 sum 0.165 -18.665 -8.879 20.670 Atomic orbital electron populations 1.70913 1.07700 1.29123 1.49068 1.27017 0.96237 1.04515 0.98662 0.82994 0.74135 0.72535 0.77311 1.21698 1.20454 1.20560 1.20113 1.01795 0.91922 1.35816 0.93679 1.44363 1.53277 1.01232 1.34946 1.20708 0.90701 0.97566 0.86822 1.21987 1.02272 0.92375 0.98590 1.21549 0.84674 0.93138 0.92233 1.22336 0.98571 0.99803 0.97128 1.20815 0.96467 0.85420 0.94507 1.22362 1.04203 0.78401 0.97172 1.48056 1.13723 1.10907 1.60678 1.16898 0.82766 0.83405 0.78385 1.90878 1.34564 1.72096 1.44388 1.22060 0.89011 0.94086 1.14445 1.24266 1.01333 0.88266 0.99082 1.75021 1.01304 1.20890 1.18346 1.78178 1.06883 1.03725 1.14944 1.46506 1.11462 1.06989 1.44470 0.67498 1.23134 0.87853 0.97668 0.97916 1.23155 1.04190 0.81833 0.94868 1.88067 1.31015 1.27687 1.82518 0.93799 0.97342 0.93896 0.90766 0.89537 0.92138 0.91107 0.94141 0.96689 0.88068 0.88686 0.76519 0.85978 0.88039 0.84858 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 12.47 21.65 0.27 -55.79 16 2 C -0.07 -3.76 4.47 84.86 0.38 -3.38 16 3 Si 1.11 50.60 30.02 68.60 2.06 52.66 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.37 -20.63 9.42 84.03 0.79 -19.84 16 8 H 0.05 2.58 7.99 -2.91 -0.02 2.55 16 9 N -0.61 -30.51 2.86 -698.21 -2.00 -32.50 16 10 C 0.17 7.68 4.68 86.51 0.40 8.08 16 11 C -0.11 -3.82 5.12 30.80 0.16 -3.66 16 12 C 0.12 3.53 0.68 -10.71 -0.01 3.52 16 13 C -0.14 -4.51 4.33 30.65 0.13 -4.38 16 14 C 0.15 6.37 6.28 86.36 0.54 6.91 16 15 C 0.10 2.24 5.29 86.34 0.46 2.69 16 16 N -0.60 -10.85 2.52 -821.52 -2.07 -12.92 16 17 C 0.60 12.50 7.68 86.61 0.67 13.17 16 18 O -0.54 -15.26 16.47 -4.08 -0.07 -15.33 16 19 C -0.06 -1.06 6.59 40.41 0.27 -0.79 16 20 C 0.03 0.55 11.94 84.18 1.01 1.56 16 21 N -0.29 -6.12 12.35 -57.50 -0.71 -6.83 16 22 N -0.06 -1.00 13.35 37.02 0.49 -0.51 16 23 N -0.36 -4.48 5.86 -48.52 -0.28 -4.77 16 24 H 0.47 2.37 6.10 -219.90 -1.34 1.03 16 25 C 0.06 0.64 5.79 86.36 0.50 1.14 16 26 C 0.04 0.65 6.60 72.08 0.48 1.12 16 27 O -0.37 -10.17 9.00 -148.98 -1.34 -11.51 16 28 H 0.25 15.69 7.36 -92.70 -0.68 15.01 16 29 H 0.01 0.41 7.74 -2.39 -0.02 0.40 16 30 H 0.04 2.24 6.37 -2.39 -0.02 2.22 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 2.01 6.16 -2.39 -0.01 2.00 16 35 H 0.04 1.73 7.93 -2.39 -0.02 1.72 16 36 H 0.02 0.64 7.83 -2.38 -0.02 0.62 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.09 2.39 7.08 -2.39 -0.02 2.37 16 39 H 0.22 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.10 0.70 3.79 -2.39 -0.01 0.69 16 42 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.05 1.03 6.29 -2.39 -0.02 1.01 16 Total: -1.00 -74.65 336.63 1.93 -72.72 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -0.19 Total: 8.64 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.77 Total: 6.14 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -4.30 Total: -113.32 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -1.41 Total: -26.84 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 2.06 Total: 52.66 kcal Total: -74.65 1.93 -72.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949132588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.153 kcal (2) G-P(sol) polarization free energy of solvation -74.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds