Wall clock time and date at job start Fri Apr 10 2020 18:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00405 * 2 1 4 4 H 1.48505 * 109.46871 * 270.00413 * 3 2 1 5 5 H 1.48500 * 109.46617 * 29.99636 * 3 2 1 6 6 H 1.48497 * 109.47213 * 149.99964 * 3 2 1 7 7 C 1.38820 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00027 * 170.71521 * 7 2 1 9 9 N 1.36933 * 120.00073 * 350.71091 * 7 2 1 10 10 C 1.47149 * 120.98790 * 150.48002 * 9 7 2 11 11 C 1.53302 * 108.37133 * 129.38618 * 10 9 7 12 12 O 1.42975 * 109.22616 * 52.35534 * 11 10 9 13 13 C 1.42900 * 114.20365 * 297.50199 * 12 11 10 14 14 C 1.52985 * 109.56076 * 302.52771 * 13 12 11 15 15 C 1.53195 * 109.34853 * 300.95947 * 14 13 12 16 16 N 1.46929 * 108.77788 * 305.43014 * 15 14 13 17 17 C 1.34774 * 120.64571 * 233.65240 * 16 15 14 18 18 O 1.21562 * 120.00207 * 183.86460 * 17 16 15 19 19 C 1.47868 * 119.99860 * 3.58778 * 17 16 15 20 20 N 1.34551 * 126.04881 * 173.47229 * 19 17 16 21 21 C 1.30866 * 107.27301 * 179.97438 * 20 19 17 22 22 N 1.34590 * 107.62086 * 359.97438 * 21 20 19 23 23 H 0.97001 * 125.74302 * 179.97438 * 22 21 20 24 24 N 1.28844 * 108.50674 * 359.76055 * 22 21 20 25 25 C 1.46935 * 118.71195 * 53.92429 * 16 15 14 26 26 C 1.52995 * 109.54198 * 182.22575 * 13 12 11 27 27 C 1.47153 * 120.98562 * 330.46378 * 9 7 2 28 28 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.68698 * 249.10683 * 10 9 7 30 30 H 1.09001 * 109.68508 * 9.67090 * 10 9 7 31 31 H 1.09005 * 109.51129 * 172.27782 * 11 10 9 32 32 H 1.09000 * 109.51392 * 292.42980 * 11 10 9 33 33 H 1.08998 * 109.48933 * 180.99911 * 14 13 12 34 34 H 1.08998 * 109.51074 * 60.93502 * 14 13 12 35 35 H 1.09001 * 109.58510 * 185.64311 * 15 14 13 36 36 H 1.09004 * 109.70245 * 65.28694 * 15 14 13 37 37 H 1.07997 * 126.19496 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.58794 * 65.85478 * 25 16 15 39 39 H 1.09001 * 109.58686 * 186.27910 * 25 16 15 40 40 H 1.09001 * 109.48953 * 178.99990 * 26 13 12 41 41 H 1.08998 * 109.49520 * 299.07578 * 26 13 12 42 42 H 1.09001 * 109.68357 * 110.76467 * 27 9 7 43 43 H 1.09005 * 109.70940 * 350.24203 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0796 -1.2083 -0.1514 9 7 1.3390 -2.3804 0.1904 10 6 1.8252 -3.6346 -0.4063 11 6 1.8873 -4.7007 0.6936 12 8 0.6240 -4.7635 1.3602 13 6 0.2534 -3.5559 2.0284 14 6 1.3336 -3.1807 3.0447 15 6 1.4954 -4.3192 4.0569 16 7 0.1841 -4.6146 4.6502 17 6 0.0211 -4.6214 5.9880 18 8 -1.0504 -4.9358 6.4682 19 6 1.1476 -4.2523 6.8719 20 7 1.0888 -4.0984 8.2073 21 6 2.2892 -3.7727 8.6142 22 7 3.0877 -3.7263 7.5317 23 1 4.0331 -3.5094 7.5339 24 7 2.3858 -4.0227 6.4927 25 6 -0.9448 -4.9085 3.7567 26 6 -1.0816 -3.7581 2.7478 27 6 0.1103 -2.4300 0.9986 28 1 -0.4850 0.8401 0.0004 29 1 1.1416 -3.9567 -1.1917 30 1 2.8198 -3.4807 -0.8249 31 1 2.1128 -5.6699 0.2488 32 1 2.6649 -4.4387 1.4111 33 1 1.0414 -2.2693 3.5662 34 1 2.2789 -3.0168 2.5275 35 1 2.1907 -4.0160 4.8398 36 1 1.8770 -5.2074 3.5532 37 1 2.5857 -3.5774 9.6341 38 1 -0.7580 -5.8425 3.2269 39 1 -1.8607 -4.9945 4.3414 40 1 -1.3546 -2.8421 3.2718 41 1 -1.8538 -4.0047 2.0192 42 1 -0.7456 -2.6291 0.3536 43 1 -0.0306 -1.4788 1.5120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949495849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:19 Heat of formation + Delta-G solvation = 61.093987 kcal Electronic energy + Delta-G solvation = -28730.947449 eV Core-core repulsion = 24814.973319 eV Total energy + Delta-G solvation = -3915.974130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.70177 -40.13994 -38.72099 -36.05835 -34.36340 -33.60524 -32.85019 -31.56408 -31.23416 -30.51977 -28.30908 -26.66659 -24.94826 -23.57649 -23.35110 -22.71645 -22.63299 -20.86543 -19.86666 -18.83074 -18.40549 -17.31229 -16.86617 -16.56056 -15.83626 -15.47372 -15.17926 -14.93310 -14.54577 -14.43311 -14.26020 -13.75635 -13.55791 -13.52994 -13.17814 -12.87905 -12.76909 -12.29199 -11.74315 -11.57721 -11.46428 -11.01014 -10.93466 -10.91861 -10.84474 -10.70276 -10.59055 -10.48455 -10.25392 -10.14952 -9.98898 -9.90658 -9.82153 -9.35424 -8.93437 -8.54372 -8.38357 -6.66082 -5.83089 -3.31827 1.16523 1.96561 2.33656 2.90160 3.31565 3.35167 3.38212 3.39377 4.01724 4.24877 4.36885 4.45264 4.58373 5.16860 5.18459 5.35521 5.44582 5.51543 5.54579 5.62296 5.69872 5.83704 5.87678 5.91836 5.96487 6.01677 6.14808 6.19320 6.28471 6.33999 6.41815 6.52228 6.59819 6.68834 6.78292 6.83004 6.89747 7.15583 7.43610 7.57248 7.69839 7.77864 8.01009 8.21007 8.37389 9.13554 9.74770 10.33756 11.23773 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.004306 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.452479 B = 6500.937679 C = 7352.631974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.110 3.890 11 C 0.046 3.954 12 O -0.381 6.381 13 C 0.093 3.907 14 C -0.142 4.142 15 C 0.078 3.922 16 N -0.585 5.585 17 C 0.607 3.393 18 O -0.522 6.522 19 C 0.165 3.835 20 N -0.464 5.464 21 C 0.197 3.803 22 N -0.404 5.404 23 H 0.450 0.550 24 N -0.272 5.272 25 C 0.120 3.880 26 C -0.115 4.115 27 C 0.159 3.841 28 H 0.255 0.745 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.068 0.932 37 H 0.230 0.770 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.026 0.974 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.299 -8.469 13.300 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.317 5.317 10 C -0.017 4.017 11 C -0.032 4.032 12 O -0.301 6.301 13 C 0.052 3.948 14 C -0.180 4.180 15 C -0.045 4.045 16 N -0.318 5.318 17 C 0.390 3.610 18 O -0.395 6.395 19 C -0.116 4.116 20 N -0.188 5.188 21 C -0.101 4.101 22 N -0.125 5.125 23 H 0.297 0.703 24 N -0.113 5.113 25 C -0.001 4.001 26 C -0.153 4.153 27 C 0.033 3.967 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.246 0.754 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.044 0.956 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.221 -8.763 13.099 16.943 hybrid contribution 1.515 1.479 0.019 2.118 sum 7.736 -7.284 13.118 16.882 Atomic orbital electron populations 1.69949 1.05219 1.25531 1.54195 1.25139 0.95422 0.98281 1.00505 0.86282 0.78980 0.83622 0.77776 1.21297 1.21554 1.20532 1.19151 0.90580 0.83572 1.44891 0.91676 1.44006 1.28300 1.03310 1.56081 1.21592 0.98324 0.87927 0.93809 1.23003 0.86007 0.99123 0.95070 1.87780 1.37330 1.35477 1.69507 1.22202 0.92759 0.87207 0.92585 1.22268 1.01689 0.97532 0.96502 1.22748 0.84096 0.98961 0.98741 1.47911 1.12413 1.67467 1.04000 1.16433 0.84814 0.78448 0.81257 1.90800 1.25753 1.48265 1.74652 1.23983 0.91379 1.05534 0.90714 1.71314 1.20786 1.17567 1.09124 1.26727 0.86212 1.00912 0.96244 1.45411 1.13632 1.48692 1.04815 0.70315 1.74085 1.05522 1.19203 1.12469 1.21743 0.88860 0.98628 0.90917 1.21920 0.97140 0.98775 0.97499 1.21400 0.88229 0.96242 0.90853 0.93494 0.95789 0.92271 0.90412 0.93632 0.91417 0.89347 0.85482 0.91403 0.75398 0.90390 0.89260 0.90337 0.89940 0.95636 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.63 10.92 55.49 0.61 -25.02 16 2 C 0.01 0.14 5.11 -17.43 -0.09 0.05 16 3 Si 0.90 21.15 29.56 -169.99 -5.03 16.13 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.25 -6.67 9.65 -15.06 -0.15 -6.81 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 N -0.59 -14.38 2.55 -171.85 -0.44 -14.82 16 10 C 0.11 2.25 6.73 -3.53 -0.02 2.23 16 11 C 0.05 0.80 6.60 37.31 0.25 1.04 16 12 O -0.38 -7.07 9.00 -35.23 -0.32 -7.39 16 13 C 0.09 1.75 0.68 -90.50 -0.06 1.69 16 14 C -0.14 -2.49 4.33 -26.64 -0.12 -2.61 16 15 C 0.08 1.18 6.07 -3.71 -0.02 1.15 16 16 N -0.59 -9.35 2.97 -173.59 -0.51 -9.86 16 17 C 0.61 10.40 7.71 -12.32 -0.09 10.30 16 18 O -0.52 -10.27 16.52 5.31 0.09 -10.18 16 19 C 0.16 2.45 7.74 -156.35 -1.21 1.24 16 20 N -0.46 -6.30 11.41 -12.36 -0.14 -6.44 16 21 C 0.20 1.51 13.14 -90.48 -1.19 0.32 16 22 N -0.40 -2.97 6.93 29.56 0.20 -2.76 16 23 H 0.45 1.27 8.96 -190.21 -1.71 -0.44 16 24 N -0.27 -3.28 8.61 32.07 0.28 -3.00 16 25 C 0.12 1.87 6.21 -3.48 -0.02 1.85 16 26 C -0.11 -1.92 5.12 -26.41 -0.14 -2.06 16 27 C 0.16 3.70 4.04 -3.55 -0.01 3.69 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.76 6.29 -51.93 -0.33 0.44 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.67 6.16 -51.93 -0.32 1.35 16 35 H 0.13 1.81 3.71 -120.82 -0.45 1.36 16 36 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 37 H 0.23 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.08 1.18 7.82 -51.93 -0.41 0.77 16 39 H 0.09 1.37 7.02 -51.93 -0.36 1.01 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -34.96 337.89 -10.26 -45.22 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.21 Total: 0.95 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -2.88 Total: 12.08 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.01 Total: -61.91 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.23 Total: -17.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.96 -10.26 -45.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949495849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.316 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds