Wall clock time and date at job start Fri Apr 10 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48497 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46726 * 299.99532 * 3 2 1 6 6 H 1.48496 * 109.46952 * 59.99501 * 3 2 1 7 7 C 1.38814 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99762 * 173.43509 * 7 2 1 9 9 N 1.36939 * 120.00159 * 353.43558 * 7 2 1 10 10 C 1.46964 * 120.59446 * 138.50980 * 9 7 2 11 11 C 1.53811 * 108.39638 * 124.76101 * 10 9 7 12 12 N 1.46958 * 108.58267 * 49.64024 * 11 10 9 13 13 C 1.34769 * 120.59991 * 124.66646 * 12 11 10 14 14 O 1.21592 * 120.00621 * 187.20104 * 13 12 11 15 15 C 1.47524 * 119.99527 * 7.19963 * 13 12 11 16 16 C 1.36597 * 125.77076 * 187.40449 * 15 13 12 17 17 N 1.34814 * 106.84032 * 179.89994 * 16 15 13 18 18 C 1.46505 * 126.59416 * 180.13491 * 17 16 15 19 19 H 1.08998 * 110.45734 * 152.69429 * 18 17 16 20 20 C 1.54514 * 110.51012 * 275.29488 * 18 17 16 21 21 C 1.54480 * 104.06047 * 118.64703 * 20 18 17 22 22 O 1.44425 * 104.80426 * 23.97565 * 21 20 18 23 23 C 1.44424 * 105.27623 * 319.49224 * 22 21 20 24 24 N 1.40210 * 106.81242 * 0.36246 * 17 16 15 25 25 N 1.28759 * 108.36494 * 359.76995 * 24 17 16 26 26 C 1.46975 * 118.80950 * 304.64736 * 12 11 10 27 27 C 1.46962 * 120.59508 * 318.79787 * 9 7 2 28 28 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.61193 * 244.54402 * 10 9 7 30 30 H 1.09009 * 109.60731 * 5.05770 * 10 9 7 31 31 H 1.08999 * 109.73909 * 289.84994 * 11 10 9 32 32 H 1.09006 * 109.67547 * 169.39238 * 11 10 9 33 33 H 1.07999 * 126.58100 * 0.04890 * 16 15 13 34 34 H 1.08999 * 110.51064 * 237.28920 * 20 18 17 35 35 H 1.09002 * 110.50820 * 359.86174 * 20 18 17 36 36 H 1.09000 * 110.37097 * 142.81494 * 21 20 18 37 37 H 1.09002 * 110.36698 * 265.03700 * 21 20 18 38 38 H 1.09008 * 110.36847 * 281.67604 * 23 22 21 39 39 H 1.08999 * 110.36893 * 159.34565 * 23 22 21 40 40 H 1.08997 * 109.61023 * 295.47849 * 26 12 11 41 41 H 1.09001 * 109.74570 * 175.05139 * 26 12 11 42 42 H 1.09006 * 109.60931 * 354.94180 * 27 9 7 43 43 H 1.08998 * 109.61773 * 115.28530 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0849 -1.2053 -0.1064 9 7 1.3323 -2.3842 0.1366 10 6 1.6970 -3.5534 -0.6755 11 6 1.9913 -4.7294 0.2712 12 7 0.8820 -4.8496 1.2276 13 6 0.2147 -6.0128 1.3616 14 8 -0.7815 -6.0657 2.0568 15 6 0.6929 -7.2219 0.6646 16 6 0.0371 -8.4183 0.6002 17 7 0.8104 -9.2489 -0.1276 18 6 0.5158 -10.6433 -0.4671 19 1 1.0065 -10.9200 -1.4002 20 6 0.9574 -11.5839 0.6764 21 6 -0.3535 -12.2628 1.1313 22 8 -1.2284 -12.1814 -0.0149 23 6 -1.0096 -10.8652 -0.5678 24 7 1.9532 -8.5233 -0.4926 25 7 1.8504 -7.3343 -0.0093 26 6 0.5136 -3.6786 2.0358 27 6 0.2229 -2.5043 1.0930 28 1 -0.4851 0.8400 -0.0004 29 1 0.8703 -3.8113 -1.3374 30 1 2.5846 -3.3262 -1.2661 31 1 2.9205 -4.5444 0.8101 32 1 2.0795 -5.6508 -0.3044 33 1 -0.9188 -8.6531 1.0447 34 1 1.6645 -12.3271 0.3080 35 1 1.3971 -11.0116 1.4933 36 1 -0.1697 -13.3043 1.3953 37 1 -0.7838 -11.7279 1.9780 38 1 -1.5417 -10.1148 0.0171 39 1 -1.3299 -10.8331 -1.6091 40 1 1.3376 -3.4189 2.7004 41 1 -0.3752 -3.9030 2.6255 42 1 0.1367 -1.5840 1.6708 43 1 -0.7068 -2.6862 0.5540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957112794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:24 Heat of formation + Delta-G solvation = 70.708457 kcal Electronic energy + Delta-G solvation = -27324.709659 eV Core-core repulsion = 23409.152444 eV Total energy + Delta-G solvation = -3915.557215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.50851 -40.04907 -39.18305 -36.68287 -35.08045 -33.76411 -31.63262 -31.29479 -31.00192 -30.02623 -29.30809 -26.93093 -24.82844 -23.98321 -23.33739 -22.87907 -22.36456 -21.20572 -20.58225 -19.18177 -17.93680 -17.26817 -16.85519 -16.12301 -16.02750 -15.90850 -15.69513 -15.13807 -14.84612 -14.66105 -14.48159 -13.93474 -13.59147 -13.49902 -13.31138 -13.26162 -13.12932 -12.77755 -12.34351 -12.29522 -12.13993 -11.94329 -11.62860 -11.18160 -11.02200 -10.77363 -10.66055 -10.54693 -10.52971 -10.27933 -10.17179 -10.03310 -9.84984 -9.43191 -9.34360 -8.51155 -8.17274 -6.44955 -5.80075 -3.40650 0.94250 1.64206 1.71314 3.18640 3.34707 3.36193 3.43404 3.45829 3.50334 3.70447 3.76058 4.05944 4.13099 4.31364 4.41783 4.46962 4.60832 4.71211 4.88172 4.97242 5.06774 5.08832 5.16676 5.22780 5.36078 5.38525 5.62763 5.88609 5.97129 6.00216 6.16507 6.17594 6.35086 6.37417 6.51262 6.71328 6.86326 6.99924 7.30447 7.53746 7.77689 7.80947 7.97058 8.50081 8.52116 9.20517 9.77612 10.43782 11.25997 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.002615 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.042933 B =10706.131922 C =11028.322692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.015 3.985 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.263 4.263 8 H 0.062 0.938 9 N -0.590 5.590 10 C 0.133 3.867 11 C 0.067 3.933 12 N -0.576 5.576 13 C 0.591 3.409 14 O -0.555 6.555 15 C -0.080 4.080 16 C 0.083 3.917 17 N -0.357 5.357 18 C 0.118 3.882 19 H 0.130 0.870 20 C -0.167 4.167 21 C 0.042 3.958 22 O -0.360 6.360 23 C 0.036 3.964 24 N -0.066 5.066 25 N -0.196 5.196 26 C 0.086 3.914 27 C 0.164 3.836 28 H 0.255 0.745 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.202 0.798 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -24.779 1.057 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.186 4.186 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.393 4.393 8 H 0.079 0.921 9 N -0.313 5.313 10 C 0.006 3.994 11 C -0.058 4.058 12 N -0.305 5.305 13 C 0.376 3.624 14 O -0.434 6.434 15 C -0.218 4.218 16 C -0.073 4.073 17 N -0.144 5.144 18 C 0.015 3.985 19 H 0.148 0.852 20 C -0.206 4.206 21 C -0.035 4.035 22 O -0.277 6.277 23 C -0.043 4.043 24 N -0.045 5.045 25 N -0.069 5.069 26 C -0.037 4.037 27 C 0.038 3.962 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.219 0.781 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.456 -24.879 0.576 24.890 hybrid contribution -0.308 1.055 0.483 1.201 sum 0.148 -23.824 1.059 23.848 Atomic orbital electron populations 1.69969 1.05465 1.25673 1.52896 1.25476 0.95402 0.98708 0.98971 0.86223 0.79513 0.83724 0.77298 1.20045 1.21513 1.21483 1.19123 0.90076 0.83208 1.46852 0.92060 1.43881 1.38178 1.08302 1.40987 1.21419 0.98438 0.87437 0.92113 1.23207 0.88048 1.02446 0.92053 1.47863 1.33382 1.10067 1.39219 1.16833 0.83118 0.81585 0.80823 1.90754 1.25442 1.85041 1.42184 1.21628 0.94653 0.96798 1.08764 1.23202 0.98763 0.89881 0.95408 1.50448 1.15978 1.11374 1.36614 1.23016 0.98386 0.75895 1.01171 0.85202 1.23435 0.99684 0.99170 0.98262 1.23531 0.88069 1.02550 0.89365 1.89245 1.63230 1.31522 1.43749 1.23874 0.91631 0.86789 1.01974 1.82052 1.03257 0.98184 1.20967 1.74540 1.16040 1.09320 1.07018 1.22587 1.00421 0.86109 0.94603 1.21064 0.90153 0.94573 0.90412 0.93484 0.96214 0.91510 0.91885 0.86701 0.78134 0.88331 0.89060 0.87889 0.91295 0.90479 0.86810 0.91914 0.90083 0.89525 0.95623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 11.56 55.49 0.64 -25.42 16 2 C 0.01 0.41 5.10 -17.43 -0.09 0.32 16 3 Si 0.90 21.49 29.56 -169.99 -5.02 16.46 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -7.18 9.46 -15.06 -0.14 -7.32 16 8 H 0.06 1.65 7.84 -52.49 -0.41 1.24 16 9 N -0.59 -14.98 2.89 -171.76 -0.50 -15.47 16 10 C 0.13 2.89 6.70 -3.37 -0.02 2.86 16 11 C 0.07 1.26 6.29 -3.37 -0.02 1.24 16 12 N -0.58 -11.21 2.95 -173.44 -0.51 -11.72 16 13 C 0.59 10.85 7.67 -12.48 -0.10 10.76 16 14 O -0.56 -11.11 16.30 5.28 0.09 -11.03 16 15 C -0.08 -1.21 6.69 -83.55 -0.56 -1.76 16 16 C 0.08 0.92 10.28 -16.83 -0.17 0.75 16 17 N -0.36 -3.52 3.54 -53.04 -0.19 -3.71 16 18 C 0.12 0.73 4.28 -66.36 -0.28 0.45 16 19 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 20 C -0.17 -0.82 6.88 -25.16 -0.17 -0.99 16 21 C 0.04 0.20 7.63 37.93 0.29 0.49 16 22 O -0.36 -2.46 11.65 -35.23 -0.41 -2.87 16 23 C 0.04 0.20 7.19 37.93 0.27 0.47 16 24 N -0.07 -0.87 13.78 60.35 0.83 -0.04 16 25 N -0.20 -2.99 8.79 32.85 0.29 -2.70 16 26 C 0.09 1.77 6.60 -3.59 -0.02 1.74 16 27 C 0.16 3.99 5.41 -3.60 -0.02 3.97 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 1.39 7.93 -51.92 -0.41 0.98 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.12 2.00 4.05 -83.72 -0.34 1.66 16 33 H 0.20 1.69 6.89 -52.49 -0.36 1.33 16 34 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.54 7.96 -51.93 -0.41 0.13 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.42 5.98 -51.92 -0.31 0.11 16 39 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.62 7.00 -51.93 -0.36 1.25 16 42 H 0.09 2.28 6.68 -51.93 -0.35 1.93 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -33.43 348.43 -6.47 -39.91 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.90 Total: -1.64 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -1.04 Total: 12.98 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.57 Total: -59.06 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.32 Total: -13.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.43 -6.47 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957112794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.614 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds