Wall clock time and date at job start Fri Apr 10 2020 18:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48497 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46726 * 299.99532 * 3 2 1 6 6 H 1.48496 * 109.46952 * 59.99501 * 3 2 1 7 7 C 1.38814 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99762 * 173.43509 * 7 2 1 9 9 N 1.36939 * 120.00159 * 353.43558 * 7 2 1 10 10 C 1.46964 * 120.59446 * 138.50980 * 9 7 2 11 11 C 1.53811 * 108.39638 * 124.76101 * 10 9 7 12 12 N 1.46958 * 108.58267 * 49.64024 * 11 10 9 13 13 C 1.34769 * 120.59991 * 124.66646 * 12 11 10 14 14 O 1.21592 * 120.00621 * 187.20104 * 13 12 11 15 15 C 1.47524 * 119.99527 * 7.19963 * 13 12 11 16 16 C 1.36597 * 125.77076 * 187.40449 * 15 13 12 17 17 N 1.34814 * 106.84032 * 179.89994 * 16 15 13 18 18 C 1.46505 * 126.59416 * 180.13491 * 17 16 15 19 19 H 1.08998 * 110.45734 * 152.69429 * 18 17 16 20 20 C 1.54514 * 110.51012 * 275.29488 * 18 17 16 21 21 C 1.54480 * 104.06047 * 118.64703 * 20 18 17 22 22 O 1.44425 * 104.80426 * 23.97565 * 21 20 18 23 23 C 1.44424 * 105.27623 * 319.49224 * 22 21 20 24 24 N 1.40210 * 106.81242 * 0.36246 * 17 16 15 25 25 N 1.28759 * 108.36494 * 359.76995 * 24 17 16 26 26 C 1.46975 * 118.80950 * 304.64736 * 12 11 10 27 27 C 1.46962 * 120.59508 * 318.79787 * 9 7 2 28 28 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.61193 * 244.54402 * 10 9 7 30 30 H 1.09009 * 109.60731 * 5.05770 * 10 9 7 31 31 H 1.08999 * 109.73909 * 289.84994 * 11 10 9 32 32 H 1.09006 * 109.67547 * 169.39238 * 11 10 9 33 33 H 1.07999 * 126.58100 * 0.04890 * 16 15 13 34 34 H 1.08999 * 110.51064 * 237.28920 * 20 18 17 35 35 H 1.09002 * 110.50820 * 359.86174 * 20 18 17 36 36 H 1.09000 * 110.37097 * 142.81494 * 21 20 18 37 37 H 1.09002 * 110.36698 * 265.03700 * 21 20 18 38 38 H 1.09008 * 110.36847 * 281.67604 * 23 22 21 39 39 H 1.08999 * 110.36893 * 159.34565 * 23 22 21 40 40 H 1.08997 * 109.61023 * 295.47849 * 26 12 11 41 41 H 1.09001 * 109.74570 * 175.05139 * 26 12 11 42 42 H 1.09006 * 109.60931 * 354.94180 * 27 9 7 43 43 H 1.08998 * 109.61773 * 115.28530 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0849 -1.2053 -0.1064 9 7 1.3323 -2.3842 0.1366 10 6 1.6970 -3.5534 -0.6755 11 6 1.9913 -4.7294 0.2712 12 7 0.8820 -4.8496 1.2276 13 6 0.2147 -6.0128 1.3616 14 8 -0.7815 -6.0657 2.0568 15 6 0.6929 -7.2219 0.6646 16 6 0.0371 -8.4183 0.6002 17 7 0.8104 -9.2489 -0.1276 18 6 0.5158 -10.6433 -0.4671 19 1 1.0065 -10.9200 -1.4002 20 6 0.9574 -11.5839 0.6764 21 6 -0.3535 -12.2628 1.1313 22 8 -1.2284 -12.1814 -0.0149 23 6 -1.0096 -10.8652 -0.5678 24 7 1.9532 -8.5233 -0.4926 25 7 1.8504 -7.3343 -0.0093 26 6 0.5136 -3.6786 2.0358 27 6 0.2229 -2.5043 1.0930 28 1 -0.4851 0.8400 -0.0004 29 1 0.8703 -3.8113 -1.3374 30 1 2.5846 -3.3262 -1.2661 31 1 2.9205 -4.5444 0.8101 32 1 2.0795 -5.6508 -0.3044 33 1 -0.9188 -8.6531 1.0447 34 1 1.6645 -12.3271 0.3080 35 1 1.3971 -11.0116 1.4933 36 1 -0.1697 -13.3043 1.3953 37 1 -0.7838 -11.7279 1.9780 38 1 -1.5417 -10.1148 0.0171 39 1 -1.3299 -10.8331 -1.6091 40 1 1.3376 -3.4189 2.7004 41 1 -0.3752 -3.9030 2.6255 42 1 0.1367 -1.5840 1.6708 43 1 -0.7068 -2.6862 0.5540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957112794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:23 Heat of formation + Delta-G solvation = 47.068848 kcal Electronic energy + Delta-G solvation = -27325.734749 eV Core-core repulsion = 23409.152444 eV Total energy + Delta-G solvation = -3916.582306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.48892 -40.90114 -40.33251 -38.39580 -35.98075 -35.44543 -33.10695 -32.52575 -32.27498 -31.33232 -29.91710 -28.72473 -26.04846 -25.36998 -24.35728 -24.21370 -23.52068 -22.12133 -21.90554 -20.60868 -19.17366 -18.31830 -17.75571 -17.53877 -17.19943 -16.94591 -16.70849 -16.35294 -16.10105 -15.88318 -15.56806 -15.42963 -15.18871 -15.06198 -14.79273 -14.45587 -14.02602 -13.71238 -13.63974 -13.41944 -13.17681 -12.96241 -12.76171 -12.58489 -12.53005 -12.44172 -12.06995 -12.04763 -12.02096 -11.82198 -11.56390 -11.34670 -10.97101 -10.93534 -10.60562 -10.44589 -9.79408 -8.49032 -7.87868 -5.54373 0.02031 0.52089 0.85597 1.47192 1.48577 1.59813 1.93812 2.16342 2.49089 2.75631 2.98604 3.24719 3.27027 3.28564 3.47070 3.65291 3.68678 3.84012 3.87981 4.09528 4.14300 4.18002 4.27867 4.41151 4.46391 4.55120 4.59227 4.66329 4.69211 4.72398 4.78296 4.80783 4.89655 5.03612 5.18138 5.22722 5.27656 5.47759 5.60717 5.62556 5.66891 6.40085 6.43647 6.77144 7.06531 7.13046 7.74858 8.37551 9.15280 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.002615 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.042933 B =10706.131922 C =11028.322692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.038 4.038 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.272 4.272 8 H 0.065 0.935 9 N -0.608 5.608 10 C 0.132 3.868 11 C 0.084 3.916 12 N -0.587 5.587 13 C 0.594 3.406 14 O -0.575 6.575 15 C -0.110 4.110 16 C 0.109 3.891 17 N -0.338 5.338 18 C 0.110 3.890 19 H 0.145 0.855 20 C -0.161 4.161 21 C 0.040 3.960 22 O -0.376 6.376 23 C 0.036 3.964 24 N -0.074 5.074 25 N -0.218 5.218 26 C 0.101 3.899 27 C 0.176 3.824 28 H 0.253 0.747 29 H 0.007 0.993 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.135 0.865 33 H 0.230 0.770 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.060 0.940 43 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -27.074 0.986 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.235 4.235 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.403 4.403 8 H 0.083 0.917 9 N -0.332 5.332 10 C 0.005 3.995 11 C -0.041 4.041 12 N -0.317 5.317 13 C 0.381 3.619 14 O -0.456 6.456 15 C -0.249 4.249 16 C -0.048 4.048 17 N -0.124 5.124 18 C 0.009 3.991 19 H 0.163 0.837 20 C -0.199 4.199 21 C -0.037 4.037 22 O -0.294 6.294 23 C -0.042 4.042 24 N -0.053 5.053 25 N -0.091 5.091 26 C -0.022 4.022 27 C 0.049 3.951 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.247 0.753 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.144 0.856 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 1.280 -27.237 0.489 27.272 hybrid contribution -0.605 1.575 0.469 1.751 sum 0.675 -25.663 0.958 25.689 Atomic orbital electron populations 1.70129 1.07000 1.26204 1.54273 1.26247 0.96156 1.02055 0.99016 0.85155 0.78777 0.79332 0.76829 1.18737 1.21735 1.21471 1.19440 0.90477 0.84182 1.46167 0.91733 1.44131 1.38100 1.08950 1.41986 1.21527 0.98108 0.87353 0.92472 1.23067 0.87793 1.01752 0.91449 1.47893 1.33969 1.10257 1.39593 1.17170 0.82372 0.82006 0.80340 1.90731 1.26229 1.85520 1.43072 1.21280 0.95988 0.96826 1.10823 1.23525 0.99000 0.88508 0.93809 1.50668 1.14538 1.12274 1.34946 1.23449 0.99341 0.73819 1.02450 0.83708 1.23430 1.00143 0.98977 0.97373 1.23665 0.87520 1.03634 0.88854 1.89243 1.63759 1.31918 1.44452 1.23941 0.90875 0.86573 1.02792 1.81968 1.04524 0.97823 1.20962 1.74377 1.16435 1.10553 1.07712 1.22232 1.00914 0.85344 0.93758 1.20788 0.88907 0.95027 0.90329 0.93834 0.97512 0.90783 0.91582 0.84839 0.75341 0.86709 0.89888 0.86343 0.91019 0.90251 0.85625 0.91166 0.89637 0.92121 0.98643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 11.56 21.65 0.25 -55.41 16 2 C -0.04 -2.12 5.10 84.86 0.43 -1.69 16 3 Si 0.97 44.63 29.56 68.60 2.03 46.66 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.27 -15.05 9.46 84.03 0.79 -14.26 16 8 H 0.07 3.47 7.84 -2.91 -0.02 3.45 16 9 N -0.61 -31.49 2.89 -697.34 -2.02 -33.51 16 10 C 0.13 5.77 6.70 86.56 0.58 6.35 16 11 C 0.08 3.11 6.29 86.57 0.54 3.66 16 12 N -0.59 -22.82 2.95 -820.91 -2.42 -25.24 16 13 C 0.59 21.44 7.67 86.69 0.67 22.11 16 14 O -0.58 -22.68 16.30 -4.01 -0.07 -22.75 16 15 C -0.11 -3.18 6.69 40.82 0.27 -2.91 16 16 C 0.11 2.16 10.28 83.85 0.86 3.02 16 17 N -0.34 -5.79 3.54 -321.72 -1.14 -6.93 16 18 C 0.11 1.03 4.28 46.01 0.20 1.23 16 19 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 20 C -0.16 -1.10 6.88 31.61 0.22 -0.88 16 21 C 0.04 0.26 7.63 72.49 0.55 0.81 16 22 O -0.38 -4.11 11.65 -148.98 -1.74 -5.85 16 23 C 0.04 0.30 7.19 72.48 0.52 0.82 16 24 N -0.07 -1.80 13.78 37.02 0.51 -1.28 16 25 N -0.22 -6.33 8.79 -49.99 -0.44 -6.77 16 26 C 0.10 4.22 6.60 86.41 0.57 4.79 16 27 C 0.18 8.87 5.41 86.42 0.47 9.34 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 3.08 7.93 -2.38 -0.02 3.06 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.13 4.55 4.05 -43.53 -0.18 4.38 16 33 H 0.23 3.14 6.89 -2.91 -0.02 3.12 16 34 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.76 7.96 -2.39 -0.02 0.74 16 36 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 0.63 5.98 -2.38 -0.01 0.61 16 39 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.09 3.46 7.00 -2.39 -0.02 3.45 16 42 H 0.06 3.33 6.68 -2.38 -0.02 3.32 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: -1.00 -72.97 348.43 2.52 -70.45 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.87 Total: 8.22 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 6.68 Total: 32.40 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -5.25 Total: -129.14 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -1.80 Total: -28.59 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -72.97 2.52 -70.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957112794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.520 kcal (2) G-P(sol) polarization free energy of solvation -72.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds