Wall clock time and date at job start Fri Apr 10 2020 18:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29400 * 125.58520 * 2 1 4 4 N 1.40175 * 108.13957 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.34852 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47219 * 270.01941 * 5 4 3 7 7 O 1.21282 * 120.00042 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00106 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00185 * 179.97438 * 8 6 5 10 10 H 1.09003 * 115.51740 * 350.59049 * 9 8 6 11 11 C 1.52998 * 117.44519 * 205.16807 * 9 8 6 12 12 H 1.08997 * 119.53826 * 5.71820 * 11 9 8 13 13 C 1.54395 * 118.12140 * 160.81228 * 11 9 8 14 14 N 1.48143 * 104.61491 * 87.19122 * 13 11 9 15 15 C 1.36940 * 127.83278 * 140.41420 * 14 13 11 16 16 H 1.07996 * 119.99789 * 195.56826 * 15 14 13 17 17 C 1.38811 * 120.00130 * 15.57636 * 15 14 13 18 18 N 1.31622 * 120.00070 * 9.09151 * 17 15 14 19 19 Si 1.86802 * 119.99993 * 189.09949 * 17 15 14 20 20 H 1.48507 * 109.46975 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47106 * 119.99270 * 19 17 15 22 22 H 1.48496 * 109.46961 * 239.99488 * 19 17 15 23 23 C 1.48139 * 104.32491 * 320.41221 * 14 13 11 24 24 C 1.53003 * 117.44045 * 136.00016 * 9 8 6 25 25 H 1.08991 * 119.54245 * 355.88397 * 24 9 8 26 26 C 1.34939 * 107.29765 * 359.97438 * 4 3 2 27 27 O 1.21817 * 126.30283 * 179.97438 * 26 4 3 28 28 N 1.34819 * 107.39689 * 0.02562 * 26 4 3 29 29 C 1.46501 * 125.82982 * 179.97438 * 28 26 4 30 30 H 1.09000 * 109.47038 * 0.03477 * 1 2 3 31 31 H 1.09005 * 109.47105 * 120.02388 * 1 2 3 32 32 H 1.08990 * 109.47731 * 240.02944 * 1 2 3 33 33 H 1.09004 * 109.47293 * 30.02535 * 5 4 3 34 34 H 1.09006 * 109.47042 * 150.01878 * 5 4 3 35 35 H 0.96997 * 120.00253 * 0.02562 * 8 6 5 36 36 H 1.09000 * 110.40271 * 205.98087 * 13 11 9 37 37 H 1.09000 * 110.40461 * 328.40355 * 13 11 9 38 38 H 0.96995 * 120.00006 * 180.02562 * 18 17 15 39 39 H 1.09007 * 110.40128 * 158.37089 * 23 14 13 40 40 H 1.09001 * 110.40830 * 280.68302 * 23 14 13 41 41 H 1.09007 * 109.47055 * 270.03645 * 29 28 26 42 42 H 1.08999 * 109.47710 * 30.03685 * 29 28 26 43 43 H 1.09001 * 109.46997 * 150.04372 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5973 0.6321 0.0006 5 6 4.7793 1.4974 0.0003 6 6 5.1847 1.7935 -1.4206 7 8 4.5485 1.3280 -2.3423 8 7 6.2536 2.5766 -1.6672 9 6 6.6480 2.8640 -3.0485 10 1 6.1317 2.2853 -3.8144 11 6 8.1136 3.2218 -3.3034 12 1 8.8315 3.1621 -2.4854 13 6 8.6558 3.0873 -4.7428 14 7 8.3464 4.3876 -5.3818 15 6 9.1285 5.1055 -6.2468 16 1 8.9034 6.1432 -6.4438 17 6 10.2104 4.4994 -6.8704 18 7 10.3813 3.1979 -6.7740 19 14 11.4240 5.5310 -7.8465 20 1 11.0102 6.9565 -7.8016 21 1 12.7798 5.3898 -7.2572 22 1 11.4463 5.0666 -9.2568 23 6 6.9993 4.7348 -4.8727 24 6 7.0230 4.3078 -3.3887 25 1 6.9233 5.0824 -2.6285 26 6 3.5938 -0.7173 0.0015 27 8 4.5736 -1.4410 0.0018 28 7 2.3062 -1.1171 0.0009 29 6 1.8394 -2.5057 0.0010 30 1 -0.3633 1.0277 -0.0006 31 1 -0.3633 -0.5142 -0.8898 32 1 -0.3634 -0.5133 0.8901 33 1 4.5468 2.4304 0.5138 34 1 5.5982 0.9941 0.5144 35 1 6.7622 2.9492 -0.9301 36 1 9.7323 2.9170 -4.7289 37 1 8.1486 2.2765 -5.2657 38 1 11.1375 2.7745 -7.2095 39 1 6.8261 5.8077 -4.9571 40 1 6.2332 4.1829 -5.4175 41 1 1.7248 -2.8506 -1.0267 42 1 2.5666 -3.1335 0.5160 43 1 0.8794 -2.5662 0.5137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962433718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:37 Heat of formation + Delta-G solvation = 81.465970 kcal Electronic energy + Delta-G solvation = -26458.432864 eV Core-core repulsion = 22543.342130 eV Total energy + Delta-G solvation = -3915.090734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.65973 -39.83066 -38.35290 -37.51420 -35.59167 -34.48295 -32.81004 -32.46290 -30.86520 -30.03285 -27.67704 -27.14671 -26.79506 -25.44777 -22.51406 -21.66549 -21.25744 -20.60211 -20.18036 -19.28838 -17.74203 -17.66000 -16.87327 -16.56499 -16.41350 -15.98548 -15.77099 -15.00652 -14.72070 -14.38037 -14.26715 -13.95601 -13.70488 -13.52891 -13.24373 -13.18904 -13.00412 -12.74869 -12.52203 -12.21187 -12.18244 -12.07602 -11.51983 -11.49529 -10.99054 -10.84587 -10.65483 -10.44505 -10.37956 -10.20285 -10.12848 -9.80750 -9.72478 -9.20458 -8.73775 -8.68117 -8.34976 -6.86322 -5.79130 -3.13603 1.43950 1.67132 2.47082 2.53098 2.70943 3.16642 3.38652 3.44275 3.47010 4.03211 4.26185 4.31447 4.46952 4.58166 4.59283 4.74841 4.82495 4.85446 4.94682 5.12935 5.16000 5.26569 5.34644 5.37777 5.39086 5.56465 5.58792 5.82299 5.83647 5.90621 6.13600 6.22698 6.27598 6.52966 6.70329 6.78731 6.90458 7.35556 7.40410 7.49616 7.54259 7.72223 7.84588 8.20110 8.20846 9.11321 9.74060 10.51078 11.35308 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.031953 B = 0.002198 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.071412 B =12733.146820 C =12969.571379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.274 3.726 3 N -0.271 5.271 4 N -0.437 5.437 5 C 0.145 3.855 6 C 0.498 3.502 7 O -0.524 6.524 8 N -0.694 5.694 9 C 0.096 3.904 10 H 0.130 0.870 11 C -0.178 4.178 12 H 0.104 0.896 13 C 0.184 3.816 14 N -0.593 5.593 15 C -0.226 4.226 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.915 5.915 19 Si 0.913 3.087 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.155 3.845 24 C -0.181 4.181 25 H 0.104 0.896 26 C 0.654 3.346 27 O -0.551 6.551 28 N -0.558 5.558 29 C 0.098 3.902 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.400 0.600 36 H 0.092 0.908 37 H 0.026 0.974 38 H 0.254 0.746 39 H 0.052 0.948 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.024 -7.217 19.907 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.004 4.004 3 N -0.094 5.094 4 N -0.256 5.256 5 C 0.019 3.981 6 C 0.282 3.718 7 O -0.399 6.399 8 N -0.343 5.343 9 C -0.010 4.010 10 H 0.148 0.852 11 C -0.200 4.200 12 H 0.122 0.878 13 C 0.058 3.942 14 N -0.317 5.317 15 C -0.354 4.354 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.561 5.561 19 Si 0.744 3.256 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.028 3.972 24 C -0.202 4.202 25 H 0.122 0.878 26 C 0.354 3.646 27 O -0.424 6.424 28 N -0.287 5.287 29 C -0.044 4.044 30 H 0.119 0.881 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.234 0.766 36 H 0.110 0.890 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.474 -7.049 19.047 28.137 hybrid contribution 1.057 -0.063 -0.126 1.066 sum -18.417 -7.112 18.921 27.345 Atomic orbital electron populations 1.20426 0.82863 1.05952 1.04194 1.24178 0.96481 0.81932 0.97831 1.76990 0.87378 1.21027 1.24006 1.48139 1.03722 1.04732 1.69026 1.21202 0.85153 0.96157 0.95588 1.20830 0.80648 0.78828 0.91478 1.90741 1.52712 1.50637 1.45761 1.45270 1.30007 1.50713 1.08340 1.21846 0.98056 0.97781 0.83323 0.85226 1.24633 0.89816 1.03068 1.02442 0.87786 1.21071 1.01096 0.87733 0.84267 1.45187 1.13130 1.21907 1.51433 1.19040 1.06573 0.92725 1.17106 0.90445 1.24920 1.00305 0.95673 0.99474 1.69910 1.30844 1.07809 1.47538 0.86030 0.80981 0.79240 0.79395 1.20353 1.21621 1.21677 1.21129 0.89109 0.98030 0.88886 1.24351 1.04714 0.91075 1.00062 0.87849 1.16616 0.83639 0.83211 0.81159 1.91095 1.34797 1.57939 1.58531 1.45779 1.06594 1.08344 1.68021 1.21812 1.01140 0.77719 1.03721 0.88130 0.88970 0.89121 0.85628 0.85673 0.76587 0.89007 0.95652 0.93558 0.92961 0.95500 0.90770 0.89300 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 9.85 36.01 0.35 0.09 16 2 C 0.27 2.51 7.98 -154.17 -1.23 1.28 16 3 N -0.27 -3.29 12.53 32.97 0.41 -2.87 16 4 N -0.44 -5.91 3.11 -66.31 -0.21 -6.11 16 5 C 0.14 1.60 6.87 -5.20 -0.04 1.56 16 6 C 0.50 7.47 7.90 -10.99 -0.09 7.38 16 7 O -0.52 -10.44 16.00 5.56 0.09 -10.36 16 8 N -0.69 -9.46 5.56 -53.80 -0.30 -9.76 16 9 C 0.10 1.68 5.98 -67.93 -0.41 1.27 16 10 H 0.13 2.64 7.40 -51.93 -0.38 2.26 16 11 C -0.18 -3.42 7.05 -89.29 -0.63 -4.05 16 12 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 13 C 0.18 4.54 5.70 -2.41 -0.01 4.52 16 14 N -0.59 -15.47 3.38 -168.83 -0.57 -16.04 16 15 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 16 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 17 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 18 N -0.91 -27.18 10.86 55.49 0.60 -26.58 16 19 Si 0.91 22.12 29.56 -169.99 -5.03 17.09 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.16 3.36 7.04 -2.39 -0.02 3.34 16 24 C -0.18 -3.27 7.05 -89.27 -0.63 -3.90 16 25 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 26 C 0.65 9.58 8.60 -86.73 -0.75 8.83 16 27 O -0.55 -9.75 17.71 5.08 0.09 -9.66 16 28 N -0.56 -5.83 3.14 -125.40 -0.39 -6.22 16 29 C 0.10 0.58 10.85 59.85 0.65 1.23 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.13 1.14 8.11 -51.93 -0.42 0.72 16 35 H 0.40 3.96 8.83 -40.82 -0.36 3.60 16 36 H 0.09 2.50 6.51 -51.93 -0.34 2.16 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 43 H 0.09 0.18 7.79 -51.93 -0.40 -0.22 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -39.90 368.10 -8.90 -48.80 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.10 Total: 1.43 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: -3.04 Total: 14.75 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.45 Total: -67.59 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.18 Total: -20.02 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.90 -8.90 -48.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962433718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.263 kcal (2) G-P(sol) polarization free energy of solvation -39.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds