Wall clock time and date at job start Fri Apr 10 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00279 * 2 1 4 4 H 1.48497 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46778 * 299.99882 * 3 2 1 6 6 H 1.48496 * 109.47370 * 60.00039 * 3 2 1 7 7 C 1.38810 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99787 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.63835 * 323.31100 * 10 9 7 12 12 C 1.55156 * 110.72112 * 199.97734 * 10 9 7 13 13 C 1.55124 * 101.48531 * 205.96939 * 12 10 9 14 14 N 1.47426 * 104.72318 * 37.29305 * 13 12 10 15 15 C 1.34775 * 125.64819 * 155.82041 * 14 13 12 16 16 O 1.21597 * 119.99949 * 179.69100 * 15 14 13 17 17 C 1.47527 * 120.00280 * 359.69111 * 15 14 13 18 18 C 1.36594 * 125.77174 * 180.30363 * 17 15 14 19 19 N 1.34814 * 106.83587 * 180.17863 * 18 17 15 20 20 C 1.46505 * 126.59150 * 179.85569 * 19 18 17 21 21 H 1.09007 * 110.45572 * 152.10917 * 20 19 18 22 22 C 1.54510 * 110.50813 * 274.70840 * 20 19 18 23 23 C 1.54477 * 104.18108 * 118.57713 * 22 20 19 24 24 O 1.44642 * 104.69773 * 336.19290 * 23 22 20 25 25 C 1.44415 * 105.37338 * 40.34325 * 24 23 22 26 26 N 1.40208 * 106.81401 * 359.59154 * 19 18 17 27 27 N 1.28761 * 108.36811 * 0.26250 * 26 19 18 28 28 C 1.47024 * 108.70221 * 335.55250 * 14 13 12 29 29 H 0.97001 * 119.99817 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00388 * 0.02562 * 9 7 2 31 31 H 1.09001 * 110.99978 * 324.20348 * 12 10 9 32 32 H 1.09000 * 111.00602 * 88.01953 * 12 10 9 33 33 H 1.09002 * 110.49554 * 278.45034 * 13 12 10 34 34 H 1.09002 * 110.34513 * 156.05736 * 13 12 10 35 35 H 1.07993 * 126.58177 * 0.03768 * 18 17 15 36 36 H 1.09002 * 110.51305 * 237.29243 * 22 20 19 37 37 H 1.08994 * 110.51141 * 359.86573 * 22 20 19 38 38 H 1.09006 * 110.37498 * 94.92285 * 23 22 20 39 39 H 1.09000 * 110.37254 * 217.25804 * 23 22 20 40 40 H 1.08998 * 110.37627 * 200.73568 * 25 24 23 41 41 H 1.09004 * 110.46797 * 78.44683 * 25 24 23 42 42 H 1.09004 * 109.88006 * 120.70724 * 28 14 13 43 43 H 1.09003 * 109.88299 * 241.71495 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9589 -3.5809 -0.6071 12 6 1.1516 -4.8144 -0.4943 13 6 1.8063 -6.0380 0.1989 14 7 2.2216 -5.5406 1.5231 15 6 2.4064 -6.2965 2.6235 16 8 2.7567 -5.7774 3.6658 17 6 2.1835 -7.7536 2.5636 18 6 2.3294 -8.6271 3.6035 19 7 2.0355 -9.8537 3.1274 20 6 2.0567 -11.1107 3.8796 21 1 1.3491 -11.8218 3.4532 22 6 3.4816 -11.7081 3.8953 23 6 3.8611 -11.7424 5.3923 24 8 3.0313 -10.7282 6.0046 25 6 1.7404 -10.8551 5.3699 26 7 1.6996 -9.6941 1.7755 27 7 1.7976 -8.4453 1.4777 28 6 2.4072 -4.0844 1.4427 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 0.1233 -4.6759 -0.1604 32 1 1.1984 -4.9100 -1.5791 33 1 2.6731 -6.3789 -0.3674 34 1 1.0815 -6.8450 0.3070 35 1 2.6257 -8.3825 4.6128 36 1 3.4780 -12.7154 3.4789 37 1 4.1696 -11.0694 3.3414 38 1 3.6391 -12.7211 5.8178 39 1 4.9163 -11.5020 5.5219 40 1 1.1691 -9.9339 5.4840 41 1 1.1899 -11.6966 5.7906 42 1 1.7423 -3.5865 2.1486 43 1 3.4431 -3.8297 1.6667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970430136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:44 Heat of formation + Delta-G solvation = 24.345804 kcal Electronic energy + Delta-G solvation = -26711.213384 eV Core-core repulsion = 22793.645734 eV Total energy + Delta-G solvation = -3917.567651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.42715 -40.92214 -40.31859 -38.66966 -36.00274 -35.55567 -33.39224 -32.43501 -31.84817 -31.03181 -29.96432 -29.05240 -26.33128 -25.11989 -24.71374 -23.62213 -23.29497 -21.92651 -21.67900 -20.74441 -19.36074 -18.76885 -17.78419 -17.53396 -17.37354 -17.03239 -16.71078 -16.60241 -16.25672 -15.88848 -15.70165 -15.32691 -15.22074 -14.82767 -14.31046 -13.99197 -13.91936 -13.79700 -13.45261 -13.39290 -13.18859 -12.94972 -12.86884 -12.66214 -12.54019 -12.41179 -12.26427 -12.15649 -12.05006 -11.74630 -11.54137 -11.45313 -11.31023 -11.00250 -10.83873 -10.45816 -9.67468 -9.09256 -7.95856 -5.26145 0.01777 0.53955 0.90799 1.48465 1.49589 1.59401 1.87841 2.13291 2.56125 2.72553 3.02750 3.23049 3.31809 3.36187 3.52762 3.68835 3.75845 3.84324 3.91149 3.93823 4.03108 4.11928 4.28541 4.32523 4.36347 4.41780 4.53322 4.56306 4.60313 4.74482 4.79658 4.82451 4.88940 4.96844 5.03939 5.18170 5.25967 5.33862 5.38822 5.53635 5.65790 6.25674 6.42638 6.74715 7.01939 7.32592 8.03926 8.28221 9.27377 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.031204 B = 0.002350 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.118254 B =11910.633495 C =12383.493138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.296 1.296 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.725 5.725 10 C 0.167 3.833 11 H 0.074 0.926 12 C -0.129 4.129 13 C 0.113 3.887 14 N -0.600 5.600 15 C 0.605 3.395 16 O -0.580 6.580 17 C -0.113 4.113 18 C 0.113 3.887 19 N -0.341 5.341 20 C 0.106 3.894 21 H 0.157 0.843 22 C -0.160 4.160 23 C 0.042 3.958 24 O -0.394 6.394 25 C 0.035 3.965 26 N -0.074 5.074 27 N -0.212 5.212 28 C 0.096 3.904 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.217 0.783 36 H 0.127 0.873 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.041 0.959 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 -32.240 8.364 33.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.364 5.364 10 C 0.057 3.943 11 H 0.092 0.908 12 C -0.168 4.168 13 C -0.009 4.009 14 N -0.331 5.331 15 C 0.393 3.607 16 O -0.460 6.460 17 C -0.252 4.252 18 C -0.045 4.045 19 N -0.126 5.126 20 C 0.006 3.994 21 H 0.174 0.826 22 C -0.198 4.198 23 C -0.034 4.034 24 O -0.313 6.313 25 C -0.043 4.043 26 N -0.054 5.054 27 N -0.086 5.086 28 C -0.030 4.030 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.145 0.855 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.060 0.940 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.298 -32.485 7.834 33.833 hybrid contribution 0.191 1.746 0.895 1.971 sum 5.489 -30.739 8.730 32.422 Atomic orbital electron populations 1.69823 1.06604 1.26075 1.59269 1.25575 0.96383 1.01141 1.03472 0.85087 0.78331 0.79842 0.76582 1.18968 1.21815 1.22352 1.19686 0.91590 0.85023 1.41249 0.90310 1.42539 1.05509 1.00567 1.87773 1.21408 0.95671 0.85673 0.91591 0.90794 1.23058 0.98852 0.92988 1.01868 1.22612 1.00297 0.96836 0.81162 1.48365 1.65517 1.08329 1.10889 1.16816 0.77253 0.84275 0.82356 1.90777 1.50633 1.73904 1.30678 1.21154 1.17008 0.94977 0.92047 1.23439 0.95868 0.83971 1.01218 1.50813 1.44612 1.07704 1.09462 1.23588 1.01706 0.81301 0.92827 0.82586 1.23469 0.93218 1.04189 0.98970 1.23742 0.96720 0.93032 0.89950 1.89259 1.22658 1.56893 1.62479 1.24027 0.87342 1.05485 0.87456 1.81899 1.21278 1.10399 0.91812 1.74672 1.10646 0.99160 1.24140 1.22880 1.00002 0.78799 1.01348 0.93966 0.79115 0.91477 0.87675 0.89671 0.88217 0.76669 0.85502 0.91311 0.88690 0.88155 0.88437 0.85880 0.94000 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.54 13.06 21.65 0.28 -59.26 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 7 C -0.24 -13.54 9.98 84.03 0.84 -12.70 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.72 -36.61 5.18 -317.32 -1.64 -38.25 16 10 C 0.17 6.63 3.59 46.18 0.17 6.80 16 11 H 0.07 2.84 8.12 -2.39 -0.02 2.82 16 12 C -0.13 -4.08 6.71 32.06 0.22 -3.87 16 13 C 0.11 3.28 6.14 86.93 0.53 3.81 16 14 N -0.60 -21.21 3.32 -815.10 -2.71 -23.92 16 15 C 0.61 21.64 7.85 86.69 0.68 22.32 16 16 O -0.58 -24.18 17.19 -4.02 -0.07 -24.25 16 17 C -0.11 -3.21 6.84 40.82 0.28 -2.93 16 18 C 0.11 2.42 10.05 83.85 0.84 3.26 16 19 N -0.34 -5.74 3.53 -321.72 -1.14 -6.88 16 20 C 0.11 0.79 4.28 46.01 0.20 0.98 16 21 H 0.16 0.41 8.14 -2.38 -0.02 0.39 16 22 C -0.16 -0.84 6.87 31.61 0.22 -0.62 16 23 C 0.04 0.22 7.65 72.48 0.55 0.77 16 24 O -0.39 -4.46 11.65 -148.98 -1.74 -6.19 16 25 C 0.03 0.23 6.65 72.48 0.48 0.71 16 26 N -0.07 -1.69 13.78 37.02 0.51 -1.18 16 27 N -0.21 -5.75 9.39 -49.99 -0.47 -6.22 16 28 C 0.10 3.88 6.62 86.73 0.57 4.46 16 29 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.38 20.38 7.71 -92.71 -0.72 19.67 16 31 H 0.07 2.26 8.00 -2.39 -0.02 2.24 16 32 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.10 2.77 6.12 -2.39 -0.01 2.76 16 35 H 0.22 4.03 7.77 -2.91 -0.02 4.01 16 36 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.07 0.69 7.96 -2.39 -0.02 0.67 16 38 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 39 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.10 0.83 7.30 -2.39 -0.02 0.82 16 41 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 42 H 0.04 1.96 8.03 -2.38 -0.02 1.95 16 43 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -76.23 358.99 1.43 -74.80 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.33 Total: 23.46 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.05 Total: 19.22 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -5.17 Total: -135.70 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.81 Total: -30.44 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -76.23 1.43 -74.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970430136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.142 kcal (2) G-P(sol) polarization free energy of solvation -76.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds