Wall clock time and date at job start Fri Apr 10 2020 18:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33324 * 126.80795 * 2 1 4 4 N 1.28509 * 109.43624 * 179.97438 * 3 2 1 5 5 N 1.28715 * 110.64115 * 359.71517 * 4 3 2 6 6 H 0.96993 * 126.03810 * 180.29821 * 5 4 3 7 7 C 1.37003 * 126.81854 * 179.97438 * 2 1 3 8 8 C 1.47227 * 127.18647 * 0.02562 * 7 2 1 9 9 O 1.21624 * 120.00527 * 7.41170 * 8 7 2 10 10 N 1.34779 * 120.00109 * 187.40581 * 8 7 2 11 11 C 1.47481 * 125.65938 * 358.36102 * 10 8 7 12 12 C 1.55034 * 104.90166 * 155.96462 * 11 10 8 13 13 C 1.54485 * 101.53070 * 36.35935 * 12 11 10 14 14 C 1.47178 * 125.66430 * 178.33051 * 10 8 7 15 15 C 1.52516 * 110.10036 * 206.97228 * 13 12 11 16 16 N 1.47304 * 108.39777 * 186.94800 * 15 13 12 17 17 C 1.36936 * 121.07231 * 229.42465 * 16 15 13 18 18 H 1.07991 * 120.00214 * 149.46883 * 17 16 15 19 19 C 1.38813 * 119.99733 * 329.46619 * 17 16 15 20 20 N 1.31620 * 120.00009 * 344.91113 * 19 17 16 21 21 Si 1.86800 * 119.99990 * 164.91459 * 19 17 16 22 22 H 1.48496 * 109.47063 * 59.99869 * 21 19 17 23 23 H 1.48504 * 109.47057 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46756 * 299.99885 * 21 19 17 25 25 C 1.47175 * 117.86332 * 49.40259 * 16 15 13 26 26 C 1.53273 * 108.55004 * 308.87205 * 25 16 15 27 27 O 1.42065 * 110.38640 * 83.93740 * 13 12 11 28 28 H 1.08993 * 109.47623 * 270.02627 * 1 2 3 29 29 H 1.08995 * 109.47296 * 30.03252 * 1 2 3 30 30 H 1.09007 * 109.46360 * 150.02917 * 1 2 3 31 31 H 1.08997 * 110.35445 * 274.81831 * 11 10 8 32 32 H 1.09002 * 110.35903 * 37.10875 * 11 10 8 33 33 H 1.08993 * 111.01355 * 154.42652 * 12 11 10 34 34 H 1.09001 * 111.01164 * 278.30078 * 12 11 10 35 35 H 1.08993 * 109.90968 * 300.90442 * 14 10 8 36 36 H 1.08995 * 109.90667 * 62.17672 * 14 10 8 37 37 H 1.09001 * 109.68267 * 306.67941 * 15 13 12 38 38 H 1.09003 * 109.67787 * 67.18721 * 15 13 12 39 39 H 0.96998 * 120.00149 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.62026 * 68.58761 * 25 16 15 41 41 H 1.09000 * 109.62291 * 189.15190 * 25 16 15 42 42 H 1.09006 * 109.51145 * 172.82031 * 26 25 16 43 43 H 1.09005 * 109.51065 * 292.96462 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0675 0.0000 4 7 3.5323 0.6838 0.0005 5 7 3.6057 -0.6013 0.0069 6 1 4.4213 -1.1262 0.0127 7 6 2.3280 -1.0968 0.0005 8 6 1.9224 -2.5120 0.0006 9 8 0.7508 -2.8089 -0.1356 10 7 2.8493 -3.4788 0.1516 11 6 4.3015 -3.2632 0.2912 12 6 4.8222 -4.5225 1.0306 13 6 3.9289 -5.6277 0.4248 14 6 2.5802 -4.9248 0.2050 15 6 3.7766 -6.7791 1.4134 16 7 3.0634 -7.8783 0.7405 17 6 1.9858 -8.4858 1.3279 18 1 1.1975 -8.8973 0.7151 19 6 1.9069 -8.5727 2.7111 20 7 2.9755 -8.3503 3.4465 21 14 0.2840 -9.0056 3.5286 22 1 -0.1664 -10.3404 3.0589 23 1 0.4641 -9.0336 5.0024 24 1 -0.7360 -7.9861 3.1744 25 6 3.5457 -8.3024 -0.5837 26 6 3.6723 -7.0630 -1.4765 27 8 4.4696 -6.0804 -0.8085 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8896 -0.5143 30 1 -0.3632 -0.8903 -0.5134 31 1 4.7685 -3.1796 -0.6901 32 1 4.4970 -2.3685 0.8824 33 1 5.8733 -4.7017 0.8046 34 1 4.6642 -4.4377 2.1058 35 1 1.9068 -5.1466 1.0329 36 1 2.1383 -5.2550 -0.7350 37 1 4.7609 -7.1214 1.7328 38 1 3.2050 -6.4458 2.2796 39 1 2.9203 -8.4107 4.4130 40 1 4.5195 -8.7815 -0.4823 41 1 2.8352 -9.0010 -1.0256 42 1 4.1478 -7.3393 -2.4177 43 1 2.6813 -6.6544 -1.6747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972491849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:53 Heat of formation + Delta-G solvation = 62.157920 kcal Electronic energy + Delta-G solvation = -28408.672393 eV Core-core repulsion = 24492.744399 eV Total energy + Delta-G solvation = -3915.927994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.59600 -40.42701 -38.78427 -36.55704 -34.59783 -34.19079 -32.70098 -31.79778 -31.34572 -29.45451 -28.38656 -27.56885 -26.00892 -24.64357 -23.44948 -23.00701 -22.28799 -21.22948 -20.44007 -18.99205 -18.16676 -17.09703 -16.96485 -16.82713 -16.37065 -15.73867 -15.27402 -14.98393 -14.49010 -14.43130 -14.02551 -13.87755 -13.62231 -13.32346 -13.21527 -13.08495 -12.97014 -12.78355 -12.24806 -12.14613 -12.02755 -11.67429 -11.45828 -11.24166 -11.16986 -10.96675 -10.85588 -10.73879 -10.62023 -10.39790 -10.17891 -10.09716 -9.70913 -9.48863 -9.21841 -8.77521 -8.63434 -6.81800 -5.95736 -3.42709 0.70772 2.07341 2.19840 2.71802 2.92834 3.30578 3.36483 3.38584 3.92933 4.01027 4.21846 4.32930 4.40535 4.56785 4.64652 4.87678 4.94988 5.03950 5.14570 5.26609 5.41961 5.50979 5.56161 5.64460 5.65954 5.73869 5.79620 5.88921 5.90471 5.98913 6.08772 6.14472 6.22034 6.30161 6.37494 6.46824 6.66817 6.86650 7.21042 7.27206 7.64394 7.69699 7.85059 8.06993 8.23800 9.00055 9.61915 10.20785 11.12954 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.004017 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.604812 B = 6968.002092 C = 7852.659003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.058 3.942 3 N -0.271 5.271 4 N -0.052 5.052 5 N -0.380 5.380 6 H 0.450 0.550 7 C -0.062 4.062 8 C 0.605 3.395 9 O -0.510 6.510 10 N -0.609 5.609 11 C 0.084 3.916 12 C -0.113 4.113 13 C 0.086 3.914 14 C 0.098 3.902 15 C 0.166 3.834 16 N -0.593 5.593 17 C -0.260 4.260 18 H 0.067 0.933 19 C 0.010 3.990 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.281 1.281 25 C 0.109 3.891 26 C 0.043 3.957 27 O -0.375 6.375 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.090 0.910 39 H 0.257 0.743 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 11.601 -6.808 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 N -0.137 5.137 4 N -0.033 5.033 5 N -0.113 5.113 6 H 0.304 0.696 7 C -0.196 4.196 8 C 0.391 3.609 9 O -0.384 6.384 10 N -0.343 5.343 11 C -0.039 4.039 12 C -0.151 4.151 13 C 0.044 3.956 14 C -0.023 4.023 15 C 0.040 3.960 16 N -0.317 5.317 17 C -0.389 4.389 18 H 0.085 0.915 19 C -0.189 4.189 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.207 1.207 25 C -0.017 4.017 26 C -0.035 4.035 27 O -0.294 6.294 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.638 12.874 -6.776 14.996 hybrid contribution -0.776 -1.674 0.603 1.941 sum 2.862 11.200 -6.173 13.105 Atomic orbital electron populations 1.20348 0.84766 1.04585 1.03891 1.22333 0.98645 0.86851 1.00342 1.74927 0.95207 1.26033 1.17578 1.78141 1.16058 0.92641 1.16498 1.46272 1.09234 1.07033 1.48714 0.69642 1.22106 0.84949 0.96439 1.16082 1.16329 0.85063 0.81559 0.77978 1.90850 1.16406 1.81406 1.49757 1.48536 1.06702 1.07853 1.71202 1.22664 0.81284 0.99204 1.00748 1.22699 1.00840 0.91302 1.00308 1.22696 0.90315 0.95308 0.87307 1.22656 0.99298 0.76488 1.03856 1.21163 0.97301 0.84914 0.92655 1.44045 1.34411 1.36610 1.16618 1.19095 0.96333 1.34028 0.89482 0.91495 1.25127 0.97065 0.99626 0.97122 1.69980 1.26709 1.52812 1.05022 0.86373 0.83453 0.78700 0.78321 1.20661 1.21482 1.20695 1.21607 0.98131 0.94152 0.87789 1.23148 0.94963 0.90165 0.95203 1.87662 1.48464 1.58629 1.34679 0.89938 0.90259 0.88511 0.90091 0.91751 0.88364 0.88530 0.89130 0.90441 0.94492 0.89172 0.93345 0.95414 0.91723 0.89641 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.01 36.01 0.36 -0.50 16 2 C 0.06 0.78 7.29 -82.39 -0.60 0.18 16 3 N -0.27 -3.78 12.35 33.51 0.41 -3.37 16 4 N -0.05 -0.67 13.35 60.35 0.81 0.14 16 5 N -0.38 -4.16 6.39 33.31 0.21 -3.95 16 6 H 0.45 3.54 5.38 -190.34 -1.02 2.52 16 7 C -0.06 -0.82 6.93 -82.34 -0.57 -1.39 16 8 C 0.61 9.15 7.84 -12.61 -0.10 9.05 16 9 O -0.51 -9.13 15.30 5.26 0.08 -9.05 16 10 N -0.61 -8.68 3.33 -172.02 -0.57 -9.26 16 11 C 0.08 0.90 5.52 -2.43 -0.01 0.88 16 12 C -0.11 -1.41 6.21 -24.88 -0.15 -1.57 16 13 C 0.09 1.43 0.81 -89.74 -0.07 1.36 16 14 C 0.10 1.67 5.96 -3.32 -0.02 1.65 16 15 C 0.17 3.52 3.94 -3.85 -0.02 3.51 16 16 N -0.59 -13.68 2.95 -172.17 -0.51 -14.18 16 17 C -0.26 -6.69 9.62 -15.06 -0.14 -6.83 16 18 H 0.07 1.70 7.87 -52.49 -0.41 1.29 16 19 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 20 N -0.90 -24.55 11.39 55.49 0.63 -23.91 16 21 Si 0.90 20.84 29.58 -169.99 -5.03 15.81 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 C 0.11 2.12 6.72 -3.53 -0.02 2.09 16 26 C 0.04 0.70 6.76 37.30 0.25 0.95 16 27 O -0.38 -6.29 10.26 -35.23 -0.36 -6.65 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.16 6.50 -51.93 -0.34 0.83 16 31 H 0.08 0.75 8.13 -51.93 -0.42 0.32 16 32 H 0.06 0.52 5.56 -51.93 -0.29 0.23 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 1.19 8.01 -51.93 -0.42 0.78 16 35 H 0.09 1.78 7.61 -51.93 -0.40 1.39 16 36 H 0.08 1.40 6.00 -51.93 -0.31 1.09 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 2.13 6.23 -51.93 -0.32 1.81 16 39 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.80 6.22 -51.93 -0.32 0.47 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -30.81 341.40 -6.71 -37.52 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.34 Total: 2.19 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -1.19 Total: 9.56 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.98 Total: -54.54 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.28 Total: -15.69 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.81 -6.71 -37.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972491849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.679 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds