Wall clock time and date at job start Fri Apr 10 2020 18:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33324 * 126.80795 * 2 1 4 4 N 1.28509 * 109.43624 * 179.97438 * 3 2 1 5 5 N 1.28715 * 110.64115 * 359.71517 * 4 3 2 6 6 H 0.96993 * 126.03810 * 180.29821 * 5 4 3 7 7 C 1.37003 * 126.81854 * 179.97438 * 2 1 3 8 8 C 1.47227 * 127.18647 * 0.02562 * 7 2 1 9 9 O 1.21624 * 120.00527 * 7.41170 * 8 7 2 10 10 N 1.34779 * 120.00109 * 187.40581 * 8 7 2 11 11 C 1.47481 * 125.65938 * 358.36102 * 10 8 7 12 12 C 1.55034 * 104.90166 * 155.96462 * 11 10 8 13 13 C 1.54485 * 101.53070 * 36.35935 * 12 11 10 14 14 C 1.47178 * 125.66430 * 178.33051 * 10 8 7 15 15 C 1.52516 * 110.10036 * 206.97228 * 13 12 11 16 16 N 1.47304 * 108.39777 * 186.94800 * 15 13 12 17 17 C 1.36936 * 121.07231 * 229.42465 * 16 15 13 18 18 H 1.07991 * 120.00214 * 149.46883 * 17 16 15 19 19 C 1.38813 * 119.99733 * 329.46619 * 17 16 15 20 20 N 1.31620 * 120.00009 * 344.91113 * 19 17 16 21 21 Si 1.86800 * 119.99990 * 164.91459 * 19 17 16 22 22 H 1.48496 * 109.47063 * 59.99869 * 21 19 17 23 23 H 1.48504 * 109.47057 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46756 * 299.99885 * 21 19 17 25 25 C 1.47175 * 117.86332 * 49.40259 * 16 15 13 26 26 C 1.53273 * 108.55004 * 308.87205 * 25 16 15 27 27 O 1.42065 * 110.38640 * 83.93740 * 13 12 11 28 28 H 1.08993 * 109.47623 * 270.02627 * 1 2 3 29 29 H 1.08995 * 109.47296 * 30.03252 * 1 2 3 30 30 H 1.09007 * 109.46360 * 150.02917 * 1 2 3 31 31 H 1.08997 * 110.35445 * 274.81831 * 11 10 8 32 32 H 1.09002 * 110.35903 * 37.10875 * 11 10 8 33 33 H 1.08993 * 111.01355 * 154.42652 * 12 11 10 34 34 H 1.09001 * 111.01164 * 278.30078 * 12 11 10 35 35 H 1.08993 * 109.90968 * 300.90442 * 14 10 8 36 36 H 1.08995 * 109.90667 * 62.17672 * 14 10 8 37 37 H 1.09001 * 109.68267 * 306.67941 * 15 13 12 38 38 H 1.09003 * 109.67787 * 67.18721 * 15 13 12 39 39 H 0.96998 * 120.00149 * 179.97438 * 20 19 17 40 40 H 1.08995 * 109.62026 * 68.58761 * 25 16 15 41 41 H 1.09000 * 109.62291 * 189.15190 * 25 16 15 42 42 H 1.09006 * 109.51145 * 172.82031 * 26 25 16 43 43 H 1.09005 * 109.51065 * 292.96462 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0675 0.0000 4 7 3.5323 0.6838 0.0005 5 7 3.6057 -0.6013 0.0069 6 1 4.4213 -1.1262 0.0127 7 6 2.3280 -1.0968 0.0005 8 6 1.9224 -2.5120 0.0006 9 8 0.7508 -2.8089 -0.1356 10 7 2.8493 -3.4788 0.1516 11 6 4.3015 -3.2632 0.2912 12 6 4.8222 -4.5225 1.0306 13 6 3.9289 -5.6277 0.4248 14 6 2.5802 -4.9248 0.2050 15 6 3.7766 -6.7791 1.4134 16 7 3.0634 -7.8783 0.7405 17 6 1.9858 -8.4858 1.3279 18 1 1.1975 -8.8973 0.7151 19 6 1.9069 -8.5727 2.7111 20 7 2.9755 -8.3503 3.4465 21 14 0.2840 -9.0056 3.5286 22 1 -0.1664 -10.3404 3.0589 23 1 0.4641 -9.0336 5.0024 24 1 -0.7360 -7.9861 3.1744 25 6 3.5457 -8.3024 -0.5837 26 6 3.6723 -7.0630 -1.4765 27 8 4.4696 -6.0804 -0.8085 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8896 -0.5143 30 1 -0.3632 -0.8903 -0.5134 31 1 4.7685 -3.1796 -0.6901 32 1 4.4970 -2.3685 0.8824 33 1 5.8733 -4.7017 0.8046 34 1 4.6642 -4.4377 2.1058 35 1 1.9068 -5.1466 1.0329 36 1 2.1383 -5.2550 -0.7350 37 1 4.7609 -7.1214 1.7328 38 1 3.2050 -6.4458 2.2796 39 1 2.9203 -8.4107 4.4130 40 1 4.5195 -8.7815 -0.4823 41 1 2.8352 -9.0010 -1.0256 42 1 4.1478 -7.3393 -2.4177 43 1 2.6813 -6.6544 -1.6747 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972491849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:52 Heat of formation + Delta-G solvation = 39.715228 kcal Electronic energy + Delta-G solvation = -28409.645581 eV Core-core repulsion = 24492.744399 eV Total energy + Delta-G solvation = -3916.901182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.59636 -41.69993 -40.10405 -37.83117 -36.29998 -35.20506 -33.78806 -33.29622 -32.92905 -30.65301 -29.60821 -28.91563 -27.55541 -25.82221 -25.07909 -24.16298 -23.36382 -22.66955 -21.48208 -20.45393 -19.30469 -18.79472 -18.10499 -17.99532 -17.55918 -17.04942 -16.77502 -16.30039 -16.15723 -15.78214 -15.28879 -15.26856 -14.92207 -14.79204 -14.59403 -14.28306 -14.04842 -13.74161 -13.57955 -13.38785 -13.07631 -13.04765 -12.93394 -12.74736 -12.57611 -12.49380 -12.28869 -12.20383 -12.19319 -11.85497 -11.71621 -11.39147 -11.19581 -10.78882 -10.56089 -10.52597 -9.93910 -8.69485 -7.94139 -5.42998 -0.32801 1.04365 1.21289 1.43650 1.46672 1.51921 1.62484 1.79949 2.44456 2.70487 2.95756 3.17182 3.24106 3.31719 3.45700 3.59642 3.70712 3.83023 3.90887 4.08353 4.17453 4.23436 4.29929 4.45768 4.54637 4.59884 4.68221 4.71611 4.72713 4.83744 4.88239 4.92217 4.94340 5.01829 5.11409 5.20166 5.25725 5.47447 5.51883 5.60200 6.11223 6.27042 6.32419 6.67556 7.06076 7.06138 7.72613 8.27918 9.11515 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.004017 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.604812 B = 6968.002092 C = 7852.659003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.056 3.944 3 N -0.289 5.289 4 N -0.049 5.049 5 N -0.356 5.356 6 H 0.464 0.536 7 C -0.069 4.069 8 C 0.607 3.393 9 O -0.545 6.545 10 N -0.608 5.608 11 C 0.085 3.915 12 C -0.108 4.108 13 C 0.093 3.907 14 C 0.110 3.890 15 C 0.175 3.825 16 N -0.613 5.613 17 C -0.267 4.267 18 H 0.065 0.935 19 C -0.036 4.036 20 N -0.929 5.929 21 Si 0.957 3.043 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.104 3.896 26 C 0.050 3.950 27 O -0.369 6.369 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.014 0.986 38 H 0.058 0.942 39 H 0.252 0.748 40 H 0.023 0.977 41 H 0.068 0.932 42 H 0.124 0.876 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 13.113 -8.024 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 N -0.155 5.155 4 N -0.031 5.031 5 N -0.092 5.092 6 H 0.320 0.680 7 C -0.203 4.203 8 C 0.393 3.607 9 O -0.422 6.422 10 N -0.341 5.341 11 C -0.037 4.037 12 C -0.146 4.146 13 C 0.051 3.949 14 C -0.013 4.013 15 C 0.049 3.951 16 N -0.337 5.337 17 C -0.397 4.397 18 H 0.083 0.917 19 C -0.233 4.233 20 N -0.574 5.574 21 Si 0.786 3.214 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.021 4.021 26 C -0.027 4.027 27 O -0.288 6.288 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.142 0.858 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.726 14.393 -8.019 17.141 hybrid contribution -1.073 -2.192 0.942 2.616 sum 3.653 12.202 -7.076 14.571 Atomic orbital electron populations 1.20399 0.83722 1.04889 1.04512 1.22684 0.99556 0.86734 0.99499 1.74947 0.95549 1.26404 1.18642 1.78097 1.15800 0.93115 1.16085 1.46201 1.09121 1.06557 1.47352 0.67961 1.21745 0.85853 0.95204 1.17452 1.16507 0.84629 0.82239 0.77284 1.90833 1.17942 1.82056 1.51343 1.48507 1.08382 1.06423 1.70789 1.22921 0.78761 0.99414 1.02588 1.22745 1.01408 0.90253 1.00239 1.22430 0.91534 0.94506 0.86443 1.22258 0.98726 0.78547 1.01765 1.20940 0.95041 0.86046 0.93045 1.44313 1.34211 1.37380 1.17834 1.19367 0.97163 1.33323 0.89841 0.91739 1.25739 0.99507 1.00396 0.97676 1.70105 1.28153 1.54376 1.04719 0.85502 0.80322 0.78489 0.77136 1.19986 1.21777 1.20845 1.21777 0.97682 0.96000 0.86624 1.23157 0.95541 0.88377 0.95663 1.87681 1.48417 1.58482 1.34200 0.89121 0.88427 0.89657 0.87332 0.88647 0.85952 0.88697 0.92706 0.91541 0.96780 0.92328 0.93889 0.95904 0.91395 0.85850 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.01 71.24 0.71 -0.90 16 2 C 0.06 1.39 7.29 42.04 0.31 1.70 16 3 N -0.29 -7.49 12.35 -47.88 -0.59 -8.08 16 4 N -0.05 -1.13 13.35 37.02 0.49 -0.64 16 5 N -0.36 -6.71 6.39 -48.53 -0.31 -7.02 16 6 H 0.46 5.41 5.38 -219.91 -1.18 4.23 16 7 C -0.07 -1.67 6.93 40.40 0.28 -1.39 16 8 C 0.61 17.70 7.84 86.61 0.68 18.38 16 9 O -0.55 -19.59 15.30 -4.11 -0.06 -19.65 16 10 N -0.61 -16.46 3.33 -816.38 -2.72 -19.18 16 11 C 0.08 1.52 5.52 86.89 0.48 2.00 16 12 C -0.11 -2.46 6.21 31.80 0.20 -2.27 16 13 C 0.09 3.02 0.81 -10.22 -0.01 3.02 16 14 C 0.11 3.74 5.96 86.48 0.52 4.25 16 15 C 0.18 7.64 3.94 86.07 0.34 7.98 16 16 N -0.61 -28.87 2.95 -698.64 -2.06 -30.92 16 17 C -0.27 -14.07 9.62 84.03 0.81 -13.26 16 18 H 0.06 3.35 7.87 -2.91 -0.02 3.33 16 19 C -0.04 -1.96 4.96 84.86 0.42 -1.54 16 20 N -0.93 -52.18 11.39 21.65 0.25 -51.93 16 21 Si 0.96 43.80 29.58 68.60 2.03 45.83 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C 0.10 4.00 6.72 86.34 0.58 4.58 16 26 C 0.05 1.53 6.76 72.07 0.49 2.02 16 27 O -0.37 -11.55 10.26 -148.97 -1.53 -13.08 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 2.02 6.50 -2.38 -0.02 2.00 16 31 H 0.11 1.46 8.13 -2.39 -0.02 1.44 16 32 H 0.10 1.14 5.56 -2.39 -0.01 1.13 16 33 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 2.22 8.01 -2.39 -0.02 2.20 16 35 H 0.05 2.26 7.61 -2.39 -0.02 2.24 16 36 H 0.07 2.40 6.00 -2.39 -0.01 2.39 16 37 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 2.90 6.23 -2.39 -0.01 2.89 16 39 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 2.51 7.96 -2.39 -0.02 2.49 16 42 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 43 H 0.05 1.44 6.22 -2.38 -0.01 1.43 16 Total: -1.00 -68.73 341.40 1.17 -67.56 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -0.12 Total: 12.55 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 5.80 Total: 24.57 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -4.94 Total: -117.77 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.59 Total: -32.73 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.73 1.17 -67.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972491849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.276 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds