Wall clock time and date at job start Fri Apr 10 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99677 * 2 1 4 4 H 1.48503 * 109.47515 * 270.00263 * 3 2 1 5 5 H 1.48501 * 109.47440 * 30.00392 * 3 2 1 6 6 H 1.48502 * 109.47090 * 150.00129 * 3 2 1 7 7 C 1.38809 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.65038 * 0.04135 * 9 7 2 11 11 C 1.54906 * 104.83436 * 204.09558 * 10 9 7 12 12 C 1.55157 * 101.58289 * 322.99089 * 11 10 9 13 13 H 1.08993 * 110.87667 * 153.93588 * 12 11 10 14 14 N 1.46506 * 110.71654 * 277.13939 * 12 11 10 15 15 C 1.34771 * 119.99866 * 199.97074 * 14 12 11 16 16 O 1.21280 * 120.00133 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99996 * 179.97438 * 15 14 12 18 18 H 1.09002 * 109.44244 * 60.00252 * 17 15 14 19 19 C 1.53124 * 109.41392 * 179.91702 * 17 15 14 20 20 C 1.53472 * 109.37651 * 189.78225 * 19 17 15 21 21 C 1.50801 * 108.08069 * 311.10479 * 20 19 17 22 22 N 1.29603 * 128.73525 * 195.98454 * 21 20 19 23 23 N 1.28871 * 109.79758 * 179.84819 * 22 21 20 24 24 C 1.31386 * 109.92685 * 0.03193 * 23 22 21 25 25 O 1.35534 * 126.57448 * 180.02562 * 24 23 22 26 26 N 1.35421 * 106.84273 * 0.04088 * 24 23 22 27 27 C 1.46203 * 129.14308 * 179.86475 * 26 24 23 28 28 C 1.47024 * 125.64912 * 179.97438 * 9 7 2 29 29 H 0.96998 * 120.00159 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36070 * 322.93078 * 10 9 7 31 31 H 1.08996 * 110.36844 * 85.14013 * 10 9 7 32 32 H 1.08996 * 111.00658 * 204.91223 * 11 10 9 33 33 H 1.09002 * 111.00664 * 81.05781 * 11 10 9 34 34 H 0.97002 * 119.99778 * 19.97500 * 14 12 11 35 35 H 1.08995 * 109.48557 * 309.74705 * 19 17 15 36 36 H 1.08993 * 109.48623 * 69.80727 * 19 17 15 37 37 H 1.09000 * 109.73736 * 191.46279 * 20 19 17 38 38 H 1.08993 * 109.74569 * 70.75272 * 20 19 17 39 39 H 0.96703 * 113.99936 * 269.99957 * 25 24 23 40 40 H 1.09002 * 109.60584 * 77.29066 * 27 26 24 41 41 H 1.09001 * 109.60543 * 316.80712 * 27 26 24 42 42 H 1.08999 * 109.88343 * 59.56369 * 28 9 7 43 43 H 1.08993 * 110.01064 * 298.46418 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1414 -2.5332 -0.0031 11 6 -0.4020 -3.9328 0.6075 12 6 0.7786 -4.7525 0.0231 13 1 1.0249 -5.5942 0.6701 14 7 0.4673 -5.2160 -1.3314 15 6 1.1474 -6.2514 -1.8622 16 8 2.0167 -6.7998 -1.2184 17 6 0.8268 -6.7286 -3.2553 18 1 0.9890 -5.9160 -3.9635 19 6 1.7388 -7.9057 -3.6125 20 6 1.5869 -8.2330 -5.1042 21 6 0.1142 -8.3249 -5.4156 22 7 -0.4646 -8.8450 -6.4520 23 7 -1.7433 -8.7274 -6.3427 24 6 -2.0424 -8.1184 -5.2176 25 8 -3.2852 -7.8217 -4.7655 26 7 -0.8707 -7.8439 -4.5965 27 6 -0.6388 -7.1749 -3.3174 28 6 1.9320 -3.7274 -0.0028 29 1 -0.4850 0.8400 0.0004 30 1 -0.5998 -1.7593 0.6126 31 1 -0.5264 -2.4841 -1.0216 32 1 -1.3590 -4.3330 0.2729 33 1 -0.3534 -3.8994 1.6959 34 1 -0.2282 -4.7776 -1.8462 35 1 2.7747 -7.6398 -3.4024 36 1 1.4588 -8.7758 -3.0189 37 1 2.0695 -9.1856 -5.3231 38 1 2.0411 -7.4434 -5.7026 39 1 -3.6097 -6.9554 -5.0470 40 1 -0.8456 -7.8661 -2.5003 41 1 -1.2899 -6.3044 -3.2366 42 1 2.5579 -3.8518 0.8808 43 1 2.5305 -3.8651 -0.9032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014989115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:27 Heat of formation + Delta-G solvation = 35.816516 kcal Electronic energy + Delta-G solvation = -27376.051727 eV Core-core repulsion = 23458.981483 eV Total energy + Delta-G solvation = -3917.070243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.54869 -40.27303 -38.08648 -37.81980 -36.78984 -34.13624 -33.60359 -32.19843 -31.17970 -29.37069 -28.97924 -27.36668 -25.47672 -24.62380 -23.63657 -22.64970 -21.35980 -20.36090 -20.00610 -19.87292 -19.26840 -17.76018 -17.16815 -16.92814 -16.40811 -15.97470 -15.91555 -14.98054 -14.87056 -14.73407 -14.65043 -14.25733 -14.08903 -13.76292 -13.37267 -12.90409 -12.80547 -12.48782 -12.27022 -12.10976 -12.00242 -11.75769 -11.63247 -11.42535 -11.18647 -10.98516 -10.92095 -10.58837 -10.52999 -10.52445 -10.21245 -10.04795 -9.88073 -9.69323 -9.32349 -8.96672 -8.74988 -6.96406 -5.77581 -3.18855 1.25340 1.72102 2.39645 2.47449 3.03160 3.32602 3.37519 3.38528 3.39961 3.75613 3.94992 4.07763 4.21424 4.39907 4.57545 4.65389 4.76314 4.85819 5.03160 5.13337 5.19223 5.28941 5.31328 5.36566 5.47160 5.57244 5.59502 5.61245 5.69910 5.74424 6.08311 6.14844 6.18708 6.32607 6.35805 6.57990 6.84114 6.95273 7.27205 7.47100 7.52809 7.70254 8.12985 8.23170 8.33152 9.10455 9.71056 10.34343 11.26725 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.002873 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.971396 B = 9743.854850 C =10068.440620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.151 3.849 11 C -0.153 4.153 12 C 0.130 3.870 13 H 0.090 0.910 14 N -0.707 5.707 15 C 0.522 3.478 16 O -0.531 6.531 17 C -0.124 4.124 18 H 0.113 0.887 19 C -0.107 4.107 20 C -0.034 4.034 21 C 0.194 3.806 22 N -0.276 5.276 23 N -0.289 5.289 24 C 0.353 3.647 25 O -0.435 6.435 26 N -0.481 5.481 27 C 0.117 3.883 28 C 0.128 3.872 29 H 0.252 0.748 30 H 0.109 0.891 31 H 0.010 0.990 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.399 0.601 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.408 0.592 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.032 0.968 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 -14.154 -6.736 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.026 3.974 11 C -0.192 4.192 12 C 0.025 3.975 13 H 0.108 0.892 14 N -0.357 5.357 15 C 0.306 3.694 16 O -0.408 6.408 17 C -0.146 4.146 18 H 0.131 0.869 19 C -0.145 4.145 20 C -0.073 4.073 21 C -0.073 4.073 22 N -0.117 5.117 23 N -0.139 5.139 24 C 0.048 3.952 25 O -0.235 6.235 26 N -0.184 5.184 27 C -0.006 4.006 28 C 0.001 3.999 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.234 0.766 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.265 0.735 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.050 0.950 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.732 -15.496 -7.226 17.315 hybrid contribution -0.087 2.382 0.793 2.512 sum -2.819 -13.114 -6.432 14.876 Atomic orbital electron populations 1.69763 1.04888 1.24870 1.57750 1.24772 0.95756 0.97746 1.02327 0.86060 0.78599 0.83181 0.77591 1.21632 1.21597 1.20639 1.19085 0.90571 0.82384 1.43021 0.90477 1.44508 1.01746 0.99762 1.86943 1.21954 0.85008 0.92455 0.97988 1.23344 0.95640 0.99073 1.01116 1.22067 0.97142 0.96501 0.81762 0.89248 1.46066 1.38931 1.33066 1.17651 1.19938 0.82143 0.80271 0.87051 1.90727 1.31492 1.57064 1.61479 1.21734 0.94325 1.01157 0.97388 0.86924 1.21564 1.01609 0.97064 0.94297 1.20360 0.84815 1.05240 0.96913 1.24732 0.93920 0.99796 0.88886 1.74031 0.98935 1.19251 1.19524 1.74864 1.07013 1.18943 1.13101 1.21829 0.81132 1.01784 0.90421 1.84920 1.22489 1.41840 1.74262 1.46611 1.07145 1.45199 1.19470 1.21927 0.96985 0.98545 0.83173 1.21668 0.93757 0.85860 0.98595 0.93696 0.87326 0.97248 0.91748 0.90415 0.76625 0.88046 0.90224 0.87351 0.88001 0.73459 0.88324 0.88010 0.95015 0.95671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.47 10.09 55.49 0.56 -24.91 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.22 -5.94 10.27 -15.06 -0.15 -6.10 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.40 3.39 -170.07 -0.58 -14.98 16 10 C 0.15 3.25 5.87 -2.53 -0.01 3.23 16 11 C -0.15 -2.44 6.64 -24.58 -0.16 -2.61 16 12 C 0.13 2.03 3.25 -66.09 -0.21 1.82 16 13 H 0.09 1.37 7.69 -51.93 -0.40 0.97 16 14 N -0.71 -8.91 5.02 -52.03 -0.26 -9.17 16 15 C 0.52 6.29 7.13 -10.99 -0.08 6.22 16 16 O -0.53 -8.26 15.54 5.56 0.09 -8.17 16 17 C -0.12 -1.04 2.53 -91.53 -0.23 -1.28 16 18 H 0.11 0.86 8.12 -51.93 -0.42 0.44 16 19 C -0.11 -0.84 4.68 -26.42 -0.12 -0.97 16 20 C -0.03 -0.24 6.34 -27.59 -0.17 -0.42 16 21 C 0.19 2.03 7.78 -154.44 -1.20 0.83 16 22 N -0.28 -3.70 12.17 32.93 0.40 -3.30 16 23 N -0.29 -4.01 12.24 29.53 0.36 -3.65 16 24 C 0.35 3.93 9.30 -89.29 -0.83 3.10 16 25 O -0.44 -3.67 13.64 -18.30 -0.25 -3.92 16 26 N -0.48 -4.65 3.16 -115.37 -0.36 -5.02 16 27 C 0.12 0.88 6.16 -4.03 -0.02 0.86 16 28 C 0.13 2.56 6.98 -3.06 -0.02 2.53 16 29 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.11 2.72 5.87 -51.93 -0.30 2.41 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.40 4.36 8.26 -40.82 -0.34 4.02 16 35 H 0.10 0.84 7.78 -51.93 -0.40 0.44 16 36 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.41 1.31 9.06 45.56 0.41 1.72 16 40 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.10 0.58 7.87 -51.93 -0.41 0.17 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.53 8.04 -51.93 -0.42 0.11 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -34.56 352.47 -8.29 -42.85 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.21 Total: 1.83 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -3.33 Total: 6.83 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.12 Total: -61.03 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.16 Total: -12.09 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.56 -8.29 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014989115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.667 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds