Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99677 * 2 1 4 4 H 1.48503 * 109.47515 * 270.00263 * 3 2 1 5 5 H 1.48501 * 109.47440 * 30.00392 * 3 2 1 6 6 H 1.48502 * 109.47090 * 150.00129 * 3 2 1 7 7 C 1.38809 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.65038 * 0.04135 * 9 7 2 11 11 C 1.54906 * 104.83436 * 204.09558 * 10 9 7 12 12 C 1.55157 * 101.58289 * 322.99089 * 11 10 9 13 13 H 1.08993 * 110.87667 * 153.93588 * 12 11 10 14 14 N 1.46506 * 110.71654 * 277.13939 * 12 11 10 15 15 C 1.34771 * 119.99866 * 199.97074 * 14 12 11 16 16 O 1.21280 * 120.00133 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99996 * 179.97438 * 15 14 12 18 18 H 1.09002 * 109.44244 * 60.00252 * 17 15 14 19 19 C 1.53124 * 109.41392 * 179.91702 * 17 15 14 20 20 C 1.53472 * 109.37651 * 189.78225 * 19 17 15 21 21 C 1.50801 * 108.08069 * 311.10479 * 20 19 17 22 22 N 1.29603 * 128.73525 * 195.98454 * 21 20 19 23 23 N 1.28871 * 109.79758 * 179.84819 * 22 21 20 24 24 C 1.31386 * 109.92685 * 0.03193 * 23 22 21 25 25 O 1.35534 * 126.57448 * 180.02562 * 24 23 22 26 26 N 1.35421 * 106.84273 * 0.04088 * 24 23 22 27 27 C 1.46203 * 129.14308 * 179.86475 * 26 24 23 28 28 C 1.47024 * 125.64912 * 179.97438 * 9 7 2 29 29 H 0.96998 * 120.00159 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36070 * 322.93078 * 10 9 7 31 31 H 1.08996 * 110.36844 * 85.14013 * 10 9 7 32 32 H 1.08996 * 111.00658 * 204.91223 * 11 10 9 33 33 H 1.09002 * 111.00664 * 81.05781 * 11 10 9 34 34 H 0.97002 * 119.99778 * 19.97500 * 14 12 11 35 35 H 1.08995 * 109.48557 * 309.74705 * 19 17 15 36 36 H 1.08993 * 109.48623 * 69.80727 * 19 17 15 37 37 H 1.09000 * 109.73736 * 191.46279 * 20 19 17 38 38 H 1.08993 * 109.74569 * 70.75272 * 20 19 17 39 39 H 0.96703 * 113.99936 * 269.99957 * 25 24 23 40 40 H 1.09002 * 109.60584 * 77.29066 * 27 26 24 41 41 H 1.09001 * 109.60543 * 316.80712 * 27 26 24 42 42 H 1.08999 * 109.88343 * 59.56369 * 28 9 7 43 43 H 1.08993 * 110.01064 * 298.46418 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1414 -2.5332 -0.0031 11 6 -0.4020 -3.9328 0.6075 12 6 0.7786 -4.7525 0.0231 13 1 1.0249 -5.5942 0.6701 14 7 0.4673 -5.2160 -1.3314 15 6 1.1474 -6.2514 -1.8622 16 8 2.0167 -6.7998 -1.2184 17 6 0.8268 -6.7286 -3.2553 18 1 0.9890 -5.9160 -3.9635 19 6 1.7388 -7.9057 -3.6125 20 6 1.5869 -8.2330 -5.1042 21 6 0.1142 -8.3249 -5.4156 22 7 -0.4646 -8.8450 -6.4520 23 7 -1.7433 -8.7274 -6.3427 24 6 -2.0424 -8.1184 -5.2176 25 8 -3.2852 -7.8217 -4.7655 26 7 -0.8707 -7.8439 -4.5965 27 6 -0.6388 -7.1749 -3.3174 28 6 1.9320 -3.7274 -0.0028 29 1 -0.4850 0.8400 0.0004 30 1 -0.5998 -1.7593 0.6126 31 1 -0.5264 -2.4841 -1.0216 32 1 -1.3590 -4.3330 0.2729 33 1 -0.3534 -3.8994 1.6959 34 1 -0.2282 -4.7776 -1.8462 35 1 2.7747 -7.6398 -3.4024 36 1 1.4588 -8.7758 -3.0189 37 1 2.0695 -9.1856 -5.3231 38 1 2.0411 -7.4434 -5.7026 39 1 -3.6097 -6.9554 -5.0470 40 1 -0.8456 -7.8661 -2.5003 41 1 -1.2899 -6.3044 -3.2366 42 1 2.5579 -3.8518 0.8808 43 1 2.5305 -3.8651 -0.9032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014989115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = 8.520384 kcal Electronic energy + Delta-G solvation = -27377.235376 eV Core-core repulsion = 23458.981483 eV Total energy + Delta-G solvation = -3918.253892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.33933 -41.29925 -39.17049 -38.72068 -37.74939 -35.55800 -34.33443 -33.73606 -32.17506 -30.92156 -29.85681 -28.85846 -26.62726 -26.00337 -24.46481 -23.42277 -22.37643 -22.02617 -21.31158 -20.65188 -19.95518 -19.00102 -18.45698 -17.99920 -17.26087 -17.16449 -16.68955 -16.60986 -15.90249 -15.62047 -15.56672 -15.32777 -15.23566 -14.92714 -14.62845 -14.23434 -13.80213 -13.56566 -13.39841 -13.29932 -13.00046 -12.92699 -12.85418 -12.79410 -12.33627 -12.29014 -12.12509 -12.05582 -12.01931 -11.83286 -11.46410 -11.32437 -11.24639 -10.93553 -10.75199 -10.13815 -10.11571 -8.88676 -7.78968 -5.21813 0.52797 0.98447 1.46964 1.47567 1.50334 1.56318 1.60464 2.06670 2.48744 2.68616 3.09012 3.24926 3.31603 3.43706 3.50310 3.71384 3.79543 3.91331 4.04137 4.08282 4.08825 4.25514 4.31969 4.37173 4.55757 4.63217 4.67125 4.74883 4.81798 4.92621 4.95702 4.99708 5.02701 5.06105 5.13725 5.44587 5.52561 5.55556 5.64715 5.81892 6.32611 6.40584 6.50486 7.11447 7.16746 7.50817 7.78207 8.39975 9.22048 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.002873 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.971396 B = 9743.854850 C =10068.440620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.060 4.060 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.623 5.623 10 C 0.152 3.848 11 C -0.132 4.132 12 C 0.147 3.853 13 H 0.100 0.900 14 N -0.702 5.702 15 C 0.527 3.473 16 O -0.565 6.565 17 C -0.113 4.113 18 H 0.127 0.873 19 C -0.102 4.102 20 C -0.027 4.027 21 C 0.197 3.803 22 N -0.313 5.313 23 N -0.332 5.332 24 C 0.360 3.640 25 O -0.437 6.437 26 N -0.478 5.478 27 C 0.118 3.882 28 C 0.125 3.875 29 H 0.248 0.752 30 H 0.072 0.928 31 H 0.000 1.000 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.410 0.590 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.430 0.570 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.023 0.977 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 -14.645 -6.810 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.253 4.253 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.028 3.972 11 C -0.171 4.171 12 C 0.041 3.959 13 H 0.118 0.882 14 N -0.353 5.353 15 C 0.313 3.687 16 O -0.444 6.444 17 C -0.134 4.134 18 H 0.144 0.856 19 C -0.141 4.141 20 C -0.066 4.066 21 C -0.071 4.071 22 N -0.153 5.153 23 N -0.183 5.183 24 C 0.054 3.946 25 O -0.240 6.240 26 N -0.181 5.181 27 C -0.005 4.005 28 C -0.001 4.001 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.018 0.982 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.292 0.708 40 H 0.120 0.880 41 H 0.144 0.856 42 H 0.041 0.959 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.006 -15.994 -7.320 17.844 hybrid contribution 0.010 2.540 0.848 2.678 sum -2.997 -13.453 -6.472 15.227 Atomic orbital electron populations 1.69999 1.05810 1.25001 1.58428 1.25491 0.96643 1.00477 1.02644 0.85141 0.77637 0.79529 0.77384 1.21456 1.21833 1.19954 1.19361 0.90806 0.83975 1.42761 0.90973 1.44769 1.02990 1.00372 1.86791 1.21780 0.83574 0.94763 0.97117 1.23166 0.97549 0.95441 1.00941 1.21744 0.95047 0.95477 0.83640 0.88213 1.45963 1.39350 1.33287 1.16737 1.20432 0.81061 0.79349 0.87884 1.90723 1.32923 1.58050 1.62658 1.21647 0.95137 1.01711 0.94950 0.85552 1.21517 1.01317 0.96590 0.94639 1.20490 0.83000 1.06658 0.96470 1.25272 0.95095 0.98484 0.88236 1.73937 0.99117 1.20990 1.21284 1.74752 1.07580 1.20906 1.15051 1.21848 0.82100 1.00828 0.89819 1.84888 1.21327 1.43726 1.74091 1.46665 1.06552 1.45051 1.19836 1.22067 0.96657 0.99443 0.82284 1.21787 0.95260 0.85522 0.97547 0.94264 0.90965 0.98173 0.87961 0.90275 0.75331 0.88263 0.90752 0.85990 0.86281 0.70808 0.87950 0.85571 0.95858 0.96782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.57 10.09 21.65 0.22 -52.35 16 2 C -0.06 -3.22 5.49 84.86 0.47 -2.75 16 3 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.24 -12.94 10.27 84.03 0.86 -12.08 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.62 -29.79 3.39 -691.99 -2.35 -32.14 16 10 C 0.15 6.49 5.87 86.85 0.51 7.00 16 11 C -0.13 -3.92 6.64 31.99 0.21 -3.71 16 12 C 0.15 4.27 3.25 46.18 0.15 4.42 16 13 H 0.10 2.81 7.69 -2.39 -0.02 2.79 16 14 N -0.70 -15.81 5.02 -436.91 -2.19 -18.00 16 15 C 0.53 11.39 7.13 87.66 0.63 12.02 16 16 O -0.57 -16.53 15.54 -3.03 -0.05 -16.58 16 17 C -0.11 -1.58 2.53 -11.38 -0.03 -1.61 16 18 H 0.13 1.51 8.12 -2.39 -0.02 1.49 16 19 C -0.10 -1.38 4.68 30.79 0.14 -1.23 16 20 C -0.03 -0.32 6.34 30.04 0.19 -0.13 16 21 C 0.20 3.80 7.78 137.84 1.07 4.87 16 22 N -0.31 -8.19 12.17 -49.73 -0.61 -8.79 16 23 N -0.33 -9.06 12.24 -173.86 -2.13 -11.19 16 24 C 0.36 7.42 9.30 179.88 1.67 9.09 16 25 O -0.44 -6.40 13.64 -88.38 -1.21 -7.61 16 26 N -0.48 -8.16 3.16 -630.22 -1.99 -10.16 16 27 C 0.12 1.40 6.16 86.55 0.53 1.94 16 28 C 0.13 4.93 6.98 86.73 0.61 5.53 16 29 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 30 H 0.07 3.65 5.87 -2.39 -0.01 3.64 16 31 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.41 7.60 8.26 -92.71 -0.77 6.83 16 35 H 0.10 1.44 7.78 -2.39 -0.02 1.42 16 36 H 0.07 1.10 8.12 -2.39 -0.02 1.08 16 37 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.43 1.68 9.06 -74.06 -0.67 1.01 16 40 H 0.10 1.22 8.12 -2.39 -0.02 1.20 16 41 H 0.13 0.92 7.87 -2.39 -0.02 0.90 16 42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.01 0.59 8.04 -2.39 -0.02 0.57 16 Total: -1.00 -76.46 352.47 -1.63 -78.09 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -0.37 Total: 9.35 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 7.02 Total: 23.36 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -9.05 Total: -132.63 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -1.25 Total: -24.19 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -76.46 -1.63 -78.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014989115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.613 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds