Wall clock time and date at job start Fri Apr 10 2020 18:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47470 * 240.00420 * 3 2 1 5 5 H 1.48503 * 109.46963 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47194 * 120.00285 * 3 2 1 7 7 C 1.38817 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99409 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00261 * 359.97438 * 7 2 1 10 10 C 1.47028 * 125.64613 * 359.97438 * 9 7 2 11 11 C 1.54323 * 107.26949 * 178.99101 * 10 9 7 12 12 C 1.55159 * 102.94208 * 337.80201 * 11 10 9 13 13 H 1.09001 * 111.00609 * 153.61502 * 12 11 10 14 14 N 1.46500 * 111.00512 * 277.43068 * 12 11 10 15 15 C 1.34772 * 120.00017 * 204.99904 * 14 12 11 16 16 O 1.21598 * 119.99904 * 0.02562 * 15 14 12 17 17 C 1.47520 * 120.00295 * 180.02562 * 15 14 12 18 18 C 1.36594 * 125.77532 * 180.23706 * 17 15 14 19 19 N 1.34809 * 106.84047 * 180.14018 * 18 17 15 20 20 C 1.46503 * 126.59440 * 179.91128 * 19 18 17 21 21 H 1.09006 * 110.99128 * 157.45228 * 20 19 18 22 22 C 1.55457 * 111.14525 * 281.62703 * 20 19 18 23 23 C 1.54382 * 102.18540 * 151.99270 * 22 20 19 24 24 O 1.43233 * 107.66464 * 338.74226 * 23 22 20 25 25 C 1.43650 * 109.97542 * 358.24175 * 24 23 22 26 26 N 1.40212 * 106.81406 * 359.64230 * 19 18 17 27 27 N 1.28757 * 108.36426 * 0.23022 * 26 19 18 28 28 C 1.47415 * 125.64786 * 180.02562 * 9 7 2 29 29 H 0.97000 * 119.99920 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.88479 * 59.56808 * 10 9 7 31 31 H 1.09003 * 109.87977 * 298.40593 * 10 9 7 32 32 H 1.08998 * 110.71882 * 219.44582 * 11 10 9 33 33 H 1.08996 * 110.87617 * 96.23825 * 11 10 9 34 34 H 0.97001 * 119.99851 * 25.00377 * 14 12 11 35 35 H 1.08004 * 126.57949 * 0.02562 * 18 17 15 36 36 H 1.08994 * 110.83103 * 33.84335 * 22 20 19 37 37 H 1.08999 * 110.92148 * 270.18213 * 22 20 19 38 38 H 1.09002 * 109.83024 * 219.18066 * 23 22 20 39 39 H 1.08996 * 109.83002 * 98.29659 * 23 22 20 40 40 H 1.08996 * 110.30866 * 143.34644 * 25 24 23 41 41 H 1.08998 * 110.30791 * 265.41708 * 25 24 23 42 42 H 1.09000 * 110.37036 * 85.24320 * 28 9 7 43 43 H 1.09001 * 110.36925 * 322.91692 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4484 -4.0442 -0.0259 12 6 0.8515 -4.6562 -0.6115 13 1 0.9834 -5.6856 -0.2783 14 7 0.8571 -4.5759 -2.0743 15 6 1.5884 -5.4494 -2.7944 16 8 2.2433 -6.3045 -2.2299 17 6 1.5945 -5.3682 -4.2673 18 6 2.2860 -6.1918 -5.1096 19 7 2.0221 -5.7772 -6.3649 20 6 2.5444 -6.3580 -7.6044 21 1 1.8997 -6.1180 -8.4500 22 6 4.0060 -5.8981 -7.8669 23 6 4.5781 -7.0790 -8.6801 24 8 3.7618 -8.2256 -8.4145 25 6 2.7369 -7.8892 -7.4659 26 7 1.1467 -4.6873 -6.2566 27 7 0.9167 -4.4744 -5.0077 28 6 1.9336 -3.7311 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.5582 -2.0522 -0.8827 31 1 -0.5536 -2.0844 0.9027 32 1 -1.2988 -4.2516 -0.6753 33 1 -0.6325 -4.4205 0.9804 34 1 0.3345 -3.8939 -2.5246 35 1 2.9235 -7.0157 -4.8245 36 1 4.5476 -5.7742 -6.9292 37 1 4.0256 -4.9785 -8.4518 38 1 5.6050 -7.2768 -8.3725 39 1 4.5498 -6.8434 -9.7440 40 1 1.8109 -8.4104 -7.7087 41 1 3.0588 -8.1417 -6.4557 42 1 2.1672 -4.0418 1.0178 43 1 2.8327 -3.7406 -0.6167 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015960581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:38 Heat of formation + Delta-G solvation = 28.022174 kcal Electronic energy + Delta-G solvation = -26887.699967 eV Core-core repulsion = 22970.291735 eV Total energy + Delta-G solvation = -3917.408231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.41881 -40.82665 -40.39763 -38.78370 -35.87445 -35.36712 -33.63775 -32.37615 -31.87690 -30.92132 -30.01109 -28.95143 -26.56388 -25.39549 -24.59690 -23.41497 -22.18337 -22.10626 -21.83061 -21.17324 -19.53929 -18.80760 -17.75737 -17.64833 -17.41662 -17.02569 -16.65532 -16.28667 -16.05246 -15.84799 -15.67519 -15.45484 -15.23879 -14.72963 -14.71752 -14.03891 -13.93172 -13.82596 -13.54537 -13.39602 -13.13436 -12.89195 -12.78152 -12.72151 -12.37007 -12.28066 -12.13804 -12.09789 -12.04166 -11.79793 -11.57802 -11.37216 -11.21314 -10.70360 -10.68620 -10.47550 -10.04516 -8.84372 -7.83467 -5.17512 0.00593 0.55269 0.82334 1.44865 1.47802 1.54050 2.09507 2.23178 2.50131 2.64780 3.02780 3.17846 3.24586 3.35232 3.54110 3.67749 3.69790 3.79965 3.85420 3.87175 4.04581 4.09780 4.14381 4.34086 4.47568 4.54122 4.63872 4.70400 4.72607 4.76624 4.78448 4.90818 4.92465 5.00570 5.06120 5.29825 5.45165 5.54234 5.69120 5.77498 5.78801 6.21677 6.44135 6.82238 7.11238 7.12956 7.79338 8.43271 9.26431 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.002861 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.173634 B = 9783.789752 C =10628.725012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.975 3.025 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.622 5.622 10 C 0.183 3.817 11 C -0.135 4.135 12 C 0.140 3.860 13 H 0.115 0.885 14 N -0.691 5.691 15 C 0.604 3.396 16 O -0.565 6.565 17 C -0.116 4.116 18 C 0.111 3.889 19 N -0.339 5.339 20 C 0.108 3.892 21 H 0.146 0.854 22 C -0.163 4.163 23 C 0.053 3.947 24 O -0.387 6.387 25 C 0.048 3.952 26 N -0.079 5.079 27 N -0.225 5.225 28 C 0.122 3.878 29 H 0.247 0.753 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.408 0.592 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -18.347 -17.649 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.348 5.348 10 C 0.058 3.942 11 C -0.173 4.173 12 C 0.035 3.965 13 H 0.133 0.867 14 N -0.339 5.339 15 C 0.390 3.610 16 O -0.444 6.444 17 C -0.256 4.256 18 C -0.047 4.047 19 N -0.124 5.124 20 C 0.007 3.993 21 H 0.164 0.836 22 C -0.202 4.202 23 C -0.023 4.023 24 O -0.305 6.305 25 C -0.030 4.030 26 N -0.059 5.059 27 N -0.098 5.098 28 C -0.004 4.004 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.243 0.757 35 H 0.252 0.748 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.150 -17.886 -18.141 25.990 hybrid contribution 0.615 1.306 0.528 1.537 sum 5.765 -16.579 -17.613 24.866 Atomic orbital electron populations 1.70155 1.06009 1.25245 1.58177 1.25565 0.96627 1.00676 1.02687 0.85209 0.77208 0.79215 0.78021 1.20758 1.21851 1.20383 1.19325 0.90723 0.83892 1.43100 0.90754 1.44701 1.02429 1.00658 1.87042 1.20948 0.83505 0.91567 0.98133 1.23089 0.96435 0.95493 1.02284 1.22100 0.96052 0.99723 0.78642 0.86729 1.45706 1.47712 1.33320 1.07155 1.16918 0.78866 0.80940 0.84314 1.90754 1.44314 1.37690 1.71687 1.21469 1.07816 1.00790 0.95488 1.23652 0.98228 0.99658 0.83120 1.50463 1.32291 1.22835 1.06859 1.23714 0.97435 0.94708 0.83456 0.83597 1.23638 0.92240 1.01304 1.03002 1.23263 0.95393 0.82866 1.00797 1.88510 1.44444 1.34680 1.62891 1.23806 0.93474 0.90503 0.95176 1.81978 1.09584 1.03228 1.11103 1.74700 1.16998 1.19379 0.98739 1.22100 0.95230 0.85438 0.97672 0.94404 0.96720 0.97085 0.89256 0.88481 0.75719 0.74817 0.89688 0.87399 0.89406 0.88684 0.86693 0.89904 0.94279 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.31 10.31 21.65 0.22 -57.09 16 2 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.24 -13.88 10.28 84.03 0.86 -13.02 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.62 -32.29 3.39 -691.97 -2.35 -34.64 16 10 C 0.18 8.91 5.36 86.73 0.47 9.37 16 11 C -0.13 -4.70 6.55 31.78 0.21 -4.49 16 12 C 0.14 4.93 3.43 46.39 0.16 5.09 16 13 H 0.11 3.61 7.54 -2.39 -0.02 3.59 16 14 N -0.69 -24.18 5.18 -439.11 -2.28 -26.45 16 15 C 0.60 20.01 7.82 86.69 0.68 20.69 16 16 O -0.57 -19.97 16.50 -4.03 -0.07 -20.04 16 17 C -0.12 -3.33 6.99 40.81 0.29 -3.04 16 18 C 0.11 2.20 10.38 83.85 0.87 3.07 16 19 N -0.34 -6.21 3.67 -319.39 -1.17 -7.39 16 20 C 0.11 1.12 4.24 46.50 0.20 1.32 16 21 H 0.15 1.20 8.14 -2.38 -0.02 1.18 16 22 C -0.16 -1.34 6.74 31.91 0.21 -1.12 16 23 C 0.05 0.36 7.79 72.45 0.56 0.93 16 24 O -0.39 -4.33 11.36 -148.98 -1.69 -6.02 16 25 C 0.05 0.41 7.23 72.65 0.53 0.93 16 26 N -0.08 -2.13 13.78 37.02 0.51 -1.62 16 27 N -0.22 -7.09 12.04 -49.99 -0.60 -7.69 16 28 C 0.12 5.21 6.93 86.86 0.60 5.81 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 30 H 0.01 0.79 7.38 -2.39 -0.02 0.78 16 31 H 0.01 0.60 7.51 -2.39 -0.02 0.58 16 32 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 34 H 0.41 15.03 8.36 -92.71 -0.77 14.26 16 35 H 0.24 2.96 7.05 -2.91 -0.02 2.94 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.60 6.43 -2.39 -0.02 0.58 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -75.08 358.16 0.97 -74.11 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.27 Total: 15.54 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 6.10 Total: 22.39 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -5.67 Total: -134.89 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -1.76 Total: -26.06 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -75.08 0.97 -74.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015960581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.129 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds