Wall clock time and date at job start Fri Apr 10 2020 18:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48502 * 109.46881 * 269.99916 * 3 2 1 5 5 H 1.48499 * 109.47149 * 29.99553 * 3 2 1 6 6 H 1.48496 * 109.47418 * 149.99816 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 N 1.46502 * 110.86875 * 153.93745 * 12 11 10 15 15 C 1.34774 * 119.99871 * 157.55098 * 14 12 11 16 16 O 1.21591 * 120.00222 * 359.97438 * 15 14 12 17 17 C 1.47526 * 119.99885 * 179.97438 * 15 14 12 18 18 C 1.36599 * 125.76931 * 179.97438 * 17 15 14 19 19 N 1.34816 * 106.83560 * 179.97438 * 18 17 15 20 20 C 1.46503 * 126.58932 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.43537 * 203.90896 * 20 19 18 22 22 C 1.54813 * 110.48454 * 81.22498 * 20 19 18 23 23 C 1.54994 * 102.09103 * 220.44002 * 22 20 19 24 24 O 1.44373 * 103.49203 * 37.02173 * 23 22 20 25 25 C 1.43742 * 106.97609 * 319.94365 * 24 23 22 26 26 N 1.40204 * 106.81529 * 0.02562 * 19 18 17 27 27 N 1.28766 * 108.36527 * 359.74712 * 26 19 18 28 28 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 31 31 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 32 32 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 33 33 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 34 34 H 0.96999 * 120.00288 * 337.54449 * 14 12 11 35 35 H 1.07998 * 126.58205 * 359.95705 * 18 17 15 36 36 H 1.08992 * 110.90966 * 338.63990 * 22 20 19 37 37 H 1.08999 * 110.90799 * 102.24320 * 22 20 19 38 38 H 1.09006 * 110.61895 * 278.52124 * 23 22 20 39 39 H 1.09000 * 110.75641 * 155.59041 * 23 22 20 40 40 H 1.09005 * 109.87690 * 267.08505 * 25 24 23 41 41 H 1.09003 * 109.87953 * 145.93796 * 25 24 23 42 42 H 1.08998 * 109.88222 * 59.56024 * 28 9 7 43 43 H 1.09004 * 109.88300 * 298.39391 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.6999 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 7 1.1098 -5.8831 0.8978 15 6 1.7592 -6.9523 0.3962 16 8 2.0699 -6.9786 -0.7790 17 6 2.0931 -8.0907 1.2731 18 6 2.7452 -9.2285 0.8910 19 7 2.8483 -10.0064 1.9873 20 6 3.4741 -11.3288 2.0640 21 1 3.0667 -11.8946 2.9018 22 6 5.0109 -11.1942 2.1937 23 6 5.5156 -12.3319 1.2700 24 8 4.5739 -12.3201 0.1757 25 6 3.2725 -12.0984 0.7444 26 7 2.2405 -9.3070 3.0395 27 7 1.8115 -8.1815 2.5842 28 6 1.9320 -3.7274 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5998 -1.7589 0.6142 31 1 -0.5264 -2.4851 -1.0194 32 1 -1.3589 -4.3329 0.2768 33 1 -0.3532 -3.8980 1.6994 34 1 0.8617 -5.8623 1.8353 35 1 3.1083 -9.4605 -0.0993 36 1 5.3481 -10.2223 1.8335 37 1 5.3303 -11.3582 3.2228 38 1 5.4876 -13.2895 1.7900 39 1 6.5230 -12.1204 0.9117 40 1 2.7872 -13.0541 0.9431 41 1 2.6645 -11.5071 0.0596 42 1 2.5580 -3.8509 0.8843 43 1 2.5290 -3.8641 -0.9012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015960583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:45 Heat of formation + Delta-G solvation = 29.752110 kcal Electronic energy + Delta-G solvation = -26501.388556 eV Core-core repulsion = 22584.055340 eV Total energy + Delta-G solvation = -3917.333216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.43628 -40.85038 -40.36074 -38.83679 -35.86277 -35.54548 -33.76467 -32.40977 -31.87250 -30.94459 -29.94442 -28.83750 -26.64135 -25.24020 -24.52648 -23.61348 -22.32390 -21.98004 -21.93468 -21.26979 -19.47850 -18.86004 -17.74507 -17.54631 -17.32643 -17.13855 -16.72773 -16.56616 -16.21610 -15.90342 -15.65675 -15.57418 -15.27421 -14.69797 -14.22338 -14.15268 -13.84090 -13.70698 -13.51159 -13.46796 -13.06067 -13.01161 -12.73035 -12.59400 -12.55106 -12.32060 -12.22518 -12.21106 -12.01566 -11.83882 -11.49517 -11.42595 -11.26601 -10.76360 -10.75793 -10.50346 -10.11533 -8.91425 -7.78336 -5.23452 0.00089 0.52891 0.86607 1.47092 1.49333 1.58045 2.00504 2.16437 2.50211 2.70750 3.03615 3.18960 3.31465 3.33429 3.54186 3.68771 3.74798 3.78151 3.87200 3.88644 4.03858 4.10881 4.21867 4.23322 4.42664 4.53915 4.58886 4.65112 4.73391 4.75388 4.78342 4.87726 4.90176 4.98946 5.03901 5.32950 5.44344 5.47913 5.61066 5.69360 5.78203 6.29893 6.38940 6.81095 7.07713 7.10418 7.75252 8.38668 9.23548 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.027384 B = 0.002268 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.263874 B =12345.063456 C =12648.477212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.983 3.017 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.624 5.624 10 C 0.153 3.847 11 C -0.128 4.128 12 C 0.149 3.851 13 H 0.091 0.909 14 N -0.692 5.692 15 C 0.603 3.397 16 O -0.568 6.568 17 C -0.114 4.114 18 C 0.109 3.891 19 N -0.342 5.342 20 C 0.109 3.891 21 H 0.155 0.845 22 C -0.163 4.163 23 C 0.048 3.952 24 O -0.391 6.391 25 C 0.037 3.963 26 N -0.074 5.074 27 N -0.219 5.219 28 C 0.128 3.872 29 H 0.250 0.750 30 H 0.083 0.917 31 H -0.006 1.006 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.224 0.776 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.025 0.975 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 -30.379 6.337 31.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.167 4.167 12 C 0.044 3.956 13 H 0.109 0.891 14 N -0.342 5.342 15 C 0.389 3.611 16 O -0.446 6.446 17 C -0.253 4.253 18 C -0.049 4.049 19 N -0.127 5.127 20 C 0.009 3.991 21 H 0.172 0.828 22 C -0.202 4.202 23 C -0.028 4.028 24 O -0.310 6.310 25 C -0.041 4.041 26 N -0.053 5.053 27 N -0.093 5.093 28 C 0.001 3.999 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.012 0.988 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.252 0.748 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.043 0.957 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 6.969 -30.281 6.796 31.807 hybrid contribution 0.533 1.273 -0.620 1.513 sum 7.502 -29.008 6.177 30.593 Atomic orbital electron populations 1.70002 1.06074 1.25249 1.58263 1.25634 0.96743 1.00888 1.02394 0.85020 0.77576 0.78895 0.77454 1.21369 1.21509 1.19639 1.19421 0.90928 0.83737 1.43107 0.90594 1.44731 1.02926 1.00446 1.86940 1.21779 0.83813 0.94508 0.97102 1.23140 0.97272 0.95343 1.00972 1.21771 0.94645 0.84545 0.94687 0.89131 1.45695 1.57668 1.16654 1.14206 1.17026 0.77084 0.81200 0.85829 1.90800 1.55374 1.81341 1.17085 1.21286 1.13014 0.99152 0.91871 1.23539 0.96150 0.89707 0.95474 1.50753 1.38962 1.16202 1.06780 1.23546 0.94692 0.77728 1.03180 0.82774 1.23662 0.91189 1.01251 1.04057 1.23798 0.94358 0.98056 0.86629 1.88978 1.16797 1.93739 1.31487 1.23715 0.87040 1.01204 0.92175 1.81923 1.13819 1.00040 1.09566 1.74631 1.14183 1.11630 1.08843 1.21690 0.95126 0.85466 0.97605 0.94072 0.89956 0.98819 0.88561 0.90265 0.74766 0.75975 0.90884 0.86393 0.88791 0.87260 0.87163 0.88940 0.95663 0.96812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.76 10.09 21.65 0.22 -56.54 16 2 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 3 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.24 -14.19 10.27 84.03 0.86 -13.32 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.62 -33.69 3.39 -691.98 -2.35 -36.04 16 10 C 0.15 7.64 5.89 86.85 0.51 8.15 16 11 C -0.13 -4.74 6.71 31.99 0.21 -4.52 16 12 C 0.15 5.56 3.27 46.18 0.15 5.71 16 13 H 0.09 3.50 7.62 -2.39 -0.02 3.48 16 14 N -0.69 -21.91 5.12 -440.08 -2.25 -24.16 16 15 C 0.60 19.15 7.82 86.69 0.68 19.83 16 16 O -0.57 -21.06 16.55 -4.00 -0.07 -21.13 16 17 C -0.11 -2.96 6.99 40.82 0.29 -2.68 16 18 C 0.11 2.09 9.98 83.85 0.84 2.92 16 19 N -0.34 -5.45 3.58 -321.85 -1.15 -6.60 16 20 C 0.11 0.82 4.18 45.98 0.19 1.01 16 21 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 22 C -0.16 -0.98 6.88 31.90 0.22 -0.76 16 23 C 0.05 0.22 7.72 72.66 0.56 0.79 16 24 O -0.39 -4.16 11.52 -148.98 -1.72 -5.87 16 25 C 0.04 0.25 7.21 72.35 0.52 0.77 16 26 N -0.07 -1.66 13.78 37.02 0.51 -1.15 16 27 N -0.22 -5.80 12.04 -49.99 -0.60 -6.40 16 28 C 0.13 5.85 6.99 86.73 0.61 6.45 16 29 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.08 4.60 5.87 -2.39 -0.01 4.59 16 31 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 32 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.08 2.75 8.01 -2.39 -0.02 2.73 16 34 H 0.42 11.78 8.24 -92.71 -0.76 11.02 16 35 H 0.22 3.32 7.54 -2.91 -0.02 3.29 16 36 H 0.07 0.75 8.06 -2.39 -0.02 0.73 16 37 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.09 0.04 8.14 -2.38 -0.02 0.02 16 39 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 41 H 0.09 0.77 6.46 -2.39 -0.02 0.75 16 42 H 0.03 1.16 8.03 -2.39 -0.02 1.14 16 43 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -75.94 357.43 1.01 -74.93 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.28 Total: 13.25 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 6.11 Total: 21.12 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -5.63 Total: -130.89 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.78 Total: -27.00 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.94 1.01 -74.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015960583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.683 kcal (2) G-P(sol) polarization free energy of solvation -75.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds