Wall clock time and date at job start Fri Apr 10 2020 18:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46633 * 269.99954 * 3 2 1 5 5 H 1.48492 * 109.47137 * 29.99487 * 3 2 1 6 6 H 1.48496 * 109.47169 * 149.99985 * 3 2 1 7 7 C 1.38814 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00017 * 197.84850 * 7 2 1 9 9 N 1.36938 * 119.99726 * 17.85214 * 7 2 1 10 10 C 1.46842 * 120.38423 * 28.90689 * 9 7 2 11 11 C 1.53356 * 108.81204 * 123.07491 * 10 9 7 12 12 C 1.53177 * 108.76450 * 51.31683 * 11 10 9 13 13 C 1.52842 * 117.66118 * 90.02306 * 12 11 10 14 14 C 1.52818 * 117.71365 * 158.88014 * 12 11 10 15 15 H 1.08999 * 117.50478 * 359.89011 * 14 12 11 16 16 N 1.46505 * 117.50211 * 144.89550 * 14 12 11 17 17 C 1.34775 * 119.99761 * 205.00195 * 16 14 12 18 18 O 1.21276 * 120.00452 * 359.97438 * 17 16 14 19 19 C 1.50705 * 119.99847 * 180.02562 * 17 16 14 20 20 N 1.46496 * 109.47022 * 180.02562 * 19 17 16 21 21 C 1.36598 * 127.11801 * 264.67883 * 20 19 17 22 22 N 1.30331 * 107.28278 * 179.87517 * 21 20 19 23 23 N 1.28539 * 109.99043 * 0.40753 * 22 21 20 24 24 C 1.31026 * 109.86145 * 359.73997 * 23 22 21 25 25 O 1.35535 * 126.45199 * 179.97438 * 24 23 22 26 26 C 1.53185 * 115.07669 * 304.54709 * 12 11 10 27 27 C 1.46842 * 120.37856 * 208.88143 * 9 7 2 28 28 H 0.97004 * 120.00394 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58139 * 242.87534 * 10 9 7 30 30 H 1.09000 * 109.58341 * 3.27477 * 10 9 7 31 31 H 1.09001 * 109.58645 * 171.09381 * 11 10 9 32 32 H 1.08990 * 109.58702 * 291.52569 * 11 10 9 33 33 H 1.08995 * 117.50996 * 215.17949 * 13 12 11 34 34 H 1.08998 * 117.50448 * 0.23877 * 13 12 11 35 35 H 0.96996 * 119.99938 * 25.00454 * 16 14 12 36 36 H 1.09004 * 109.46850 * 299.99715 * 19 17 16 37 37 H 1.09001 * 109.46934 * 59.99534 * 19 17 16 38 38 H 1.08003 * 126.36266 * 0.02562 * 21 20 19 39 39 H 0.96705 * 114.00391 * 270.03260 * 25 24 23 40 40 H 1.09003 * 109.58781 * 295.66423 * 26 12 11 41 41 H 1.09008 * 109.58628 * 175.23501 * 26 12 11 42 42 H 1.08993 * 109.58303 * 356.72899 * 27 9 7 43 43 H 1.09002 * 109.57567 * 117.12439 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0513 -1.2245 0.2872 9 7 1.3750 -2.3597 -0.3625 10 6 0.2558 -2.3261 -1.3125 11 6 0.5866 -3.2400 -2.4988 12 6 1.0071 -4.6116 -1.9620 13 6 -0.0870 -5.6588 -1.7560 14 6 0.9078 -5.8065 -2.9094 15 1 0.5406 -5.6197 -3.9185 16 7 1.9298 -6.8497 -2.7920 17 6 2.2186 -7.6322 -3.8506 18 8 1.6321 -7.4733 -4.9002 19 6 3.2694 -8.7057 -3.7297 20 7 3.3960 -9.4112 -5.0073 21 6 2.7799 -10.5748 -5.3711 22 7 3.1628 -10.8525 -6.5855 23 7 3.9796 -9.9531 -7.0052 24 6 4.1578 -9.0456 -6.0770 25 8 4.9506 -7.9498 -6.1639 26 6 2.1676 -4.5895 -0.9623 27 6 1.8056 -3.6488 0.1933 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6510 -2.6789 -0.8213 30 1 0.1081 -1.3061 -1.6672 31 1 -0.2938 -3.3497 -3.1321 32 1 1.4033 -2.8075 -3.0766 33 1 0.0189 -6.3378 -0.9100 34 1 -1.1091 -5.3748 -2.0062 35 1 2.3985 -6.9771 -1.9524 36 1 4.2253 -8.2507 -3.4700 37 1 2.9797 -9.4117 -2.9514 38 1 2.0995 -11.1555 -4.7657 39 1 5.8586 -8.0965 -5.8652 40 1 3.0696 -4.2298 -1.4574 41 1 2.3363 -5.5948 -0.5761 42 1 2.6777 -3.4993 0.8297 43 1 0.9948 -4.0836 0.7779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016584394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:50 Heat of formation + Delta-G solvation = 67.987908 kcal Electronic energy + Delta-G solvation = -26878.556924 eV Core-core repulsion = 22962.881737 eV Total energy + Delta-G solvation = -3915.675187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.35960 -40.26665 -38.66316 -38.00373 -35.70080 -35.12501 -33.42808 -31.72290 -30.19947 -30.13873 -29.02006 -28.15794 -24.43921 -23.36372 -22.76890 -22.59699 -22.11635 -21.12751 -20.63820 -19.29188 -18.42561 -18.05469 -17.33441 -16.66046 -16.26358 -16.10434 -15.79930 -15.43722 -14.93187 -14.70672 -14.21584 -14.16542 -13.63157 -13.50300 -13.30493 -13.12368 -12.79781 -12.75567 -12.37637 -11.98345 -11.78788 -11.72152 -11.45527 -11.21636 -11.07799 -10.80369 -10.59371 -10.52621 -10.42761 -10.16993 -10.03493 -9.79779 -9.73750 -9.51270 -9.48884 -8.69055 -8.51747 -6.72506 -5.85579 -3.29451 1.21688 1.60982 2.09529 2.46900 2.74988 3.33329 3.34102 3.40759 3.41432 3.90740 4.05729 4.11737 4.23937 4.31214 4.43648 4.80689 4.87617 4.97631 4.98339 5.23582 5.32282 5.35591 5.50494 5.53231 5.67237 5.88033 5.94195 5.94455 6.07871 6.17334 6.30353 6.32711 6.50995 6.53392 6.58849 6.71741 6.85271 6.94142 7.12432 7.28489 7.59635 7.73139 7.79219 8.31928 8.39498 9.14698 9.78034 10.34088 11.22144 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.002459 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.050852 B =11383.249419 C =11825.747854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.107 4.107 12 C -0.093 4.093 13 C -0.179 4.179 14 C 0.066 3.934 15 H 0.132 0.868 16 N -0.687 5.687 17 C 0.497 3.503 18 O -0.520 6.520 19 C 0.090 3.910 20 N -0.473 5.473 21 C 0.174 3.826 22 N -0.280 5.280 23 N -0.286 5.286 24 C 0.364 3.636 25 O -0.432 6.432 26 C -0.097 4.097 27 C 0.150 3.850 28 H 0.255 0.745 29 H 0.019 0.981 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.402 0.598 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.226 0.774 39 H 0.405 0.595 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -19.502 -2.492 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.146 4.146 12 C -0.095 4.095 13 C -0.218 4.218 14 C -0.039 4.039 15 H 0.150 0.850 16 N -0.338 5.338 17 C 0.281 3.719 18 O -0.395 6.395 19 C -0.038 4.038 20 N -0.177 5.177 21 C -0.113 4.113 22 N -0.121 5.121 23 N -0.136 5.136 24 C 0.060 3.940 25 O -0.231 6.231 26 C -0.137 4.137 27 C 0.023 3.977 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.238 0.762 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.242 0.758 39 H 0.262 0.738 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.106 -19.550 -4.790 21.034 hybrid contribution 0.834 1.449 2.027 2.628 sum 6.940 -18.101 -2.763 19.581 Atomic orbital electron populations 1.70027 1.05299 1.25630 1.53475 1.25057 0.95258 0.98497 1.00700 0.86305 0.79134 0.83650 0.77761 1.21378 1.21736 1.20433 1.19183 0.92844 0.85007 1.41535 0.91759 1.43973 1.37849 1.01480 1.47823 1.20775 0.88792 0.98764 0.86997 1.21898 0.99786 0.92991 0.99941 1.21984 0.97953 0.91269 0.98268 1.23541 0.96290 1.02552 0.99404 1.21969 0.93133 0.91407 0.97425 0.84994 1.45281 1.40233 1.34296 1.13980 1.20476 0.84082 0.82819 0.84552 1.90815 1.51359 1.69404 1.27876 1.21703 1.01739 0.95872 0.84482 1.46459 1.36765 1.20582 1.13885 1.26380 1.01434 0.87252 0.96271 1.74224 1.10231 1.19807 1.07827 1.74630 1.15756 1.00868 1.22389 1.22132 0.95719 0.91042 0.85119 1.85005 1.25452 1.26844 1.85830 1.21646 0.96194 0.98600 0.97242 1.20829 0.97440 0.87105 0.92343 0.93548 0.96299 0.89090 0.92959 0.92046 0.88917 0.88170 0.76194 0.85626 0.84974 0.75823 0.73782 0.91707 0.93687 0.92682 0.96294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.23 55.49 0.62 -24.79 16 2 C 0.00 0.10 4.88 -17.43 -0.09 0.02 16 3 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.74 9.54 -15.06 -0.14 -6.88 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -13.91 2.94 -172.26 -0.51 -14.41 16 10 C 0.17 3.91 5.40 -3.67 -0.02 3.89 16 11 C -0.11 -1.93 5.83 -26.46 -0.15 -2.08 16 12 C -0.09 -1.39 1.94 -154.50 -0.30 -1.69 16 13 C -0.18 -2.30 9.86 -26.80 -0.26 -2.56 16 14 C 0.07 0.85 6.14 -68.01 -0.42 0.43 16 15 H 0.13 1.97 7.40 -51.93 -0.38 1.58 16 16 N -0.69 -6.56 5.35 -53.88 -0.29 -6.85 16 17 C 0.50 5.11 7.90 -10.98 -0.09 5.02 16 18 O -0.52 -8.19 16.00 5.56 0.09 -8.10 16 19 C 0.09 0.48 6.69 -5.19 -0.03 0.45 16 20 N -0.47 -4.16 2.29 -121.04 -0.28 -4.44 16 21 C 0.17 1.54 12.79 -89.08 -1.14 0.40 16 22 N -0.28 -3.61 12.18 29.87 0.36 -3.24 16 23 N -0.29 -4.01 12.22 29.65 0.36 -3.64 16 24 C 0.36 4.15 9.22 -88.76 -0.82 3.33 16 25 O -0.43 -4.05 13.62 -18.30 -0.25 -4.30 16 26 C -0.10 -1.42 5.37 -26.46 -0.14 -1.57 16 27 C 0.15 2.84 6.51 -3.68 -0.02 2.81 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 31 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.40 2.69 7.12 -40.82 -0.29 2.40 16 36 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.23 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.40 1.24 9.06 45.56 0.41 1.65 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.49 6.75 -51.92 -0.35 0.14 16 42 H 0.05 1.02 7.92 -51.93 -0.41 0.61 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -37.61 360.49 -8.22 -45.83 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.11 Total: 0.87 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.63 Total: 1.56 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.28 Total: -57.38 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.16 Total: -12.40 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.61 -8.22 -45.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016584394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.813 kcal (2) G-P(sol) polarization free energy of solvation -37.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds