Wall clock time and date at job start Fri Apr 10 2020 18:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46633 * 269.99954 * 3 2 1 5 5 H 1.48492 * 109.47137 * 29.99487 * 3 2 1 6 6 H 1.48496 * 109.47169 * 149.99985 * 3 2 1 7 7 C 1.38814 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00017 * 197.84850 * 7 2 1 9 9 N 1.36938 * 119.99726 * 17.85214 * 7 2 1 10 10 C 1.46842 * 120.38423 * 28.90689 * 9 7 2 11 11 C 1.53356 * 108.81204 * 123.07491 * 10 9 7 12 12 C 1.53177 * 108.76450 * 51.31683 * 11 10 9 13 13 C 1.52842 * 117.66118 * 90.02306 * 12 11 10 14 14 C 1.52818 * 117.71365 * 158.88014 * 12 11 10 15 15 H 1.08999 * 117.50478 * 359.89011 * 14 12 11 16 16 N 1.46505 * 117.50211 * 144.89550 * 14 12 11 17 17 C 1.34775 * 119.99761 * 205.00195 * 16 14 12 18 18 O 1.21276 * 120.00452 * 359.97438 * 17 16 14 19 19 C 1.50705 * 119.99847 * 180.02562 * 17 16 14 20 20 N 1.46496 * 109.47022 * 180.02562 * 19 17 16 21 21 C 1.36598 * 127.11801 * 264.67883 * 20 19 17 22 22 N 1.30331 * 107.28278 * 179.87517 * 21 20 19 23 23 N 1.28539 * 109.99043 * 0.40753 * 22 21 20 24 24 C 1.31026 * 109.86145 * 359.73997 * 23 22 21 25 25 O 1.35535 * 126.45199 * 179.97438 * 24 23 22 26 26 C 1.53185 * 115.07669 * 304.54709 * 12 11 10 27 27 C 1.46842 * 120.37856 * 208.88143 * 9 7 2 28 28 H 0.97004 * 120.00394 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58139 * 242.87534 * 10 9 7 30 30 H 1.09000 * 109.58341 * 3.27477 * 10 9 7 31 31 H 1.09001 * 109.58645 * 171.09381 * 11 10 9 32 32 H 1.08990 * 109.58702 * 291.52569 * 11 10 9 33 33 H 1.08995 * 117.50996 * 215.17949 * 13 12 11 34 34 H 1.08998 * 117.50448 * 0.23877 * 13 12 11 35 35 H 0.96996 * 119.99938 * 25.00454 * 16 14 12 36 36 H 1.09004 * 109.46850 * 299.99715 * 19 17 16 37 37 H 1.09001 * 109.46934 * 59.99534 * 19 17 16 38 38 H 1.08003 * 126.36266 * 0.02562 * 21 20 19 39 39 H 0.96705 * 114.00391 * 270.03260 * 25 24 23 40 40 H 1.09003 * 109.58781 * 295.66423 * 26 12 11 41 41 H 1.09008 * 109.58628 * 175.23501 * 26 12 11 42 42 H 1.08993 * 109.58303 * 356.72899 * 27 9 7 43 43 H 1.09002 * 109.57567 * 117.12439 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0513 -1.2245 0.2872 9 7 1.3750 -2.3597 -0.3625 10 6 0.2558 -2.3261 -1.3125 11 6 0.5866 -3.2400 -2.4988 12 6 1.0071 -4.6116 -1.9620 13 6 -0.0870 -5.6588 -1.7560 14 6 0.9078 -5.8065 -2.9094 15 1 0.5406 -5.6197 -3.9185 16 7 1.9298 -6.8497 -2.7920 17 6 2.2186 -7.6322 -3.8506 18 8 1.6321 -7.4733 -4.9002 19 6 3.2694 -8.7057 -3.7297 20 7 3.3960 -9.4112 -5.0073 21 6 2.7799 -10.5748 -5.3711 22 7 3.1628 -10.8525 -6.5855 23 7 3.9796 -9.9531 -7.0052 24 6 4.1578 -9.0456 -6.0770 25 8 4.9506 -7.9498 -6.1639 26 6 2.1676 -4.5895 -0.9623 27 6 1.8056 -3.6488 0.1933 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6510 -2.6789 -0.8213 30 1 0.1081 -1.3061 -1.6672 31 1 -0.2938 -3.3497 -3.1321 32 1 1.4033 -2.8075 -3.0766 33 1 0.0189 -6.3378 -0.9100 34 1 -1.1091 -5.3748 -2.0062 35 1 2.3985 -6.9771 -1.9524 36 1 4.2253 -8.2507 -3.4700 37 1 2.9797 -9.4117 -2.9514 38 1 2.0995 -11.1555 -4.7657 39 1 5.8586 -8.0965 -5.8652 40 1 3.0696 -4.2298 -1.4574 41 1 2.3363 -5.5948 -0.5761 42 1 2.6777 -3.4993 0.8297 43 1 0.9948 -4.0836 0.7779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016584394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:49 Heat of formation + Delta-G solvation = 38.324122 kcal Electronic energy + Delta-G solvation = -26879.843242 eV Core-core repulsion = 22962.881737 eV Total energy + Delta-G solvation = -3916.961505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.06544 -41.20693 -39.81721 -38.68279 -37.19097 -35.83153 -34.60573 -33.38991 -31.69153 -30.92206 -30.18307 -29.18992 -26.24101 -24.21110 -24.01014 -23.48794 -23.10016 -22.46656 -21.63476 -19.98950 -19.78460 -18.95765 -18.25013 -18.00291 -17.15365 -16.98072 -16.70668 -16.50905 -16.14639 -15.76472 -15.48829 -15.31264 -15.06547 -14.84691 -14.72703 -14.18963 -13.80800 -13.60725 -13.41386 -13.26900 -13.11860 -12.89671 -12.75977 -12.60863 -12.54650 -12.26471 -12.02943 -11.99819 -11.78335 -11.41380 -11.30574 -11.26988 -10.98284 -10.67500 -10.48428 -10.27846 -9.73924 -8.62842 -7.86810 -5.32806 0.55336 1.03778 1.36463 1.45424 1.47917 1.55509 1.73971 2.00913 2.50826 2.76577 2.91607 3.28142 3.47273 3.60312 3.65164 3.76701 3.79827 3.86665 3.97617 4.09814 4.12800 4.23914 4.52988 4.59330 4.63851 4.73085 4.84181 4.88464 4.90554 4.93842 5.04231 5.08145 5.16365 5.30863 5.39065 5.43056 5.55902 5.59851 5.65720 5.76778 6.37836 6.40902 6.48043 7.09432 7.16118 7.58177 7.89348 8.39305 9.18096 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.025871 B = 0.002459 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.050852 B =11383.249419 C =11825.747854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.962 3.038 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.096 4.096 12 C -0.115 4.115 13 C -0.165 4.165 14 C 0.085 3.915 15 H 0.109 0.891 16 N -0.673 5.673 17 C 0.496 3.504 18 O -0.581 6.581 19 C 0.094 3.906 20 N -0.472 5.472 21 C 0.190 3.810 22 N -0.329 5.329 23 N -0.338 5.338 24 C 0.360 3.640 25 O -0.445 6.445 26 C -0.081 4.081 27 C 0.143 3.857 28 H 0.249 0.751 29 H 0.000 1.000 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.421 0.579 36 H 0.161 0.839 37 H 0.187 0.813 38 H 0.271 0.729 39 H 0.429 0.571 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 -22.003 -0.821 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.790 3.210 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.390 4.390 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.136 4.136 12 C -0.117 4.117 13 C -0.203 4.203 14 C -0.021 4.021 15 H 0.127 0.873 16 N -0.325 5.325 17 C 0.282 3.718 18 O -0.460 6.460 19 C -0.031 4.031 20 N -0.175 5.175 21 C -0.097 4.097 22 N -0.169 5.169 23 N -0.187 5.187 24 C 0.054 3.946 25 O -0.248 6.248 26 C -0.120 4.120 27 C 0.017 3.983 28 H 0.058 0.942 29 H 0.018 0.982 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.261 0.739 36 H 0.178 0.822 37 H 0.205 0.795 38 H 0.286 0.714 39 H 0.291 0.709 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.710 -22.091 -3.074 23.599 hybrid contribution 0.342 2.225 1.550 2.733 sum 8.051 -19.867 -1.524 21.491 Atomic orbital electron populations 1.70174 1.06668 1.25750 1.55415 1.25771 0.95953 1.01467 1.01497 0.85349 0.78323 0.79916 0.77387 1.21628 1.22325 1.19067 1.19519 0.93115 0.86302 1.40090 0.91522 1.44240 1.37807 1.02604 1.48547 1.20502 0.88227 0.97483 0.88299 1.21630 0.99644 0.94423 0.97870 1.21811 0.99732 0.90115 1.00000 1.23616 0.95510 1.01195 1.00015 1.21539 0.93659 0.90816 0.96101 0.87341 1.45111 1.39394 1.33058 1.14934 1.21344 0.84019 0.83090 0.83300 1.90813 1.53805 1.71212 1.30205 1.22124 1.01552 0.95438 0.83994 1.46601 1.35949 1.20506 1.14407 1.27296 1.00080 0.87025 0.95343 1.74106 1.11684 1.20856 1.10212 1.74484 1.17452 1.02440 1.24369 1.22202 0.96031 0.90766 0.85605 1.84948 1.27165 1.26388 1.86288 1.21468 0.95413 0.99964 0.95160 1.21043 0.97278 0.85824 0.94108 0.94213 0.98216 0.93147 0.92098 0.93629 0.86278 0.88749 0.73945 0.82193 0.79548 0.71353 0.70927 0.92396 0.88653 0.92528 0.96310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 11.23 21.65 0.24 -54.42 16 2 C -0.05 -2.83 4.88 84.86 0.41 -2.41 16 3 Si 0.96 44.23 29.59 68.60 2.03 46.26 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.26 -13.81 9.54 84.03 0.80 -13.01 16 8 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -28.94 2.94 -698.92 -2.05 -31.00 16 10 C 0.18 8.46 5.40 86.43 0.47 8.92 16 11 C -0.10 -3.52 5.83 30.77 0.18 -3.34 16 12 C -0.12 -3.18 1.94 -52.17 -0.10 -3.28 16 13 C -0.16 -3.71 9.86 30.55 0.30 -3.41 16 14 C 0.09 1.97 6.14 44.94 0.28 2.24 16 15 H 0.11 3.13 7.40 -2.39 -0.02 3.11 16 16 N -0.67 -9.80 5.35 -442.77 -2.37 -12.17 16 17 C 0.50 8.28 7.90 87.66 0.69 8.97 16 18 O -0.58 -17.32 16.00 -3.02 -0.05 -17.37 16 19 C 0.09 0.50 6.69 85.64 0.57 1.07 16 20 N -0.47 -6.73 2.29 -647.65 -1.48 -8.21 16 21 C 0.19 2.83 12.79 179.81 2.30 5.13 16 22 N -0.33 -8.23 12.18 -59.40 -0.72 -8.96 16 23 N -0.34 -9.44 12.22 -173.68 -2.12 -11.56 16 24 C 0.36 7.68 9.22 179.70 1.66 9.34 16 25 O -0.44 -7.66 13.62 -88.40 -1.20 -8.86 16 26 C -0.08 -2.10 5.37 30.77 0.17 -1.93 16 27 C 0.14 5.16 6.51 86.43 0.56 5.72 16 28 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.05 2.74 5.93 -2.39 -0.01 2.73 16 31 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.42 2.96 7.12 -92.71 -0.66 2.30 16 36 H 0.16 -0.15 8.14 -2.38 -0.02 -0.17 16 37 H 0.19 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.27 0.92 8.06 -2.91 -0.02 0.89 16 39 H 0.43 1.78 9.06 -74.05 -0.67 1.11 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.10 1.52 6.75 -2.38 -0.02 1.50 16 42 H 0.06 1.99 7.92 -2.39 -0.02 1.97 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -89.45 360.49 0.29 -89.15 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -0.27 Total: 3.12 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 8.29 Total: 14.02 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -8.50 Total: -126.31 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.25 Total: -26.23 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -89.45 0.29 -89.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016584394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.476 kcal (2) G-P(sol) polarization free energy of solvation -89.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds