Wall clock time and date at job start Fri Apr 10 2020 18:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47348 * 270.00012 * 3 2 1 5 5 H 1.48502 * 109.47211 * 30.00219 * 3 2 1 6 6 H 1.48502 * 109.47091 * 150.00112 * 3 2 1 7 7 C 1.38812 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99837 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99860 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.88370 * 37.43201 * 10 9 7 12 12 C 1.55154 * 111.00464 * 161.34883 * 10 9 7 13 13 C 1.54330 * 103.02017 * 153.38412 * 12 10 9 14 14 N 1.47022 * 107.26961 * 338.14105 * 13 12 10 15 15 C 1.34771 * 125.65290 * 178.84830 * 14 13 12 16 16 O 1.21593 * 120.00343 * 179.68931 * 15 14 13 17 17 C 1.47527 * 119.99610 * 359.69391 * 15 14 13 18 18 C 1.36597 * 125.76547 * 179.97438 * 17 15 14 19 19 N 1.34820 * 106.83727 * 179.71308 * 18 17 15 20 20 C 1.46495 * 126.59519 * 180.24451 * 19 18 17 21 21 H 1.08997 * 110.46104 * 152.40036 * 20 19 18 22 22 C 1.54516 * 110.51209 * 275.00325 * 20 19 18 23 23 C 1.54484 * 104.05986 * 118.64267 * 22 20 19 24 24 O 1.44418 * 104.80592 * 23.98168 * 23 22 20 25 25 C 1.44430 * 105.27711 * 319.48685 * 24 23 22 26 26 N 1.40214 * 106.80954 * 0.26969 * 19 18 17 27 27 N 1.28759 * 108.36470 * 359.97438 * 26 19 18 28 28 C 1.47430 * 108.69529 * 358.58836 * 14 13 12 29 29 H 0.97005 * 120.00272 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00086 * 359.97438 * 9 7 2 31 31 H 1.09000 * 110.72328 * 271.94280 * 12 10 9 32 32 H 1.08998 * 110.71858 * 35.21294 * 12 10 9 33 33 H 1.09000 * 109.99066 * 218.66141 * 13 12 10 34 34 H 1.09006 * 109.77927 * 97.49917 * 13 12 10 35 35 H 1.08002 * 126.58530 * 359.97438 * 18 17 15 36 36 H 1.08994 * 110.50999 * 237.29198 * 22 20 19 37 37 H 1.08997 * 110.50668 * 359.86241 * 22 20 19 38 38 H 1.09000 * 110.36423 * 142.81220 * 23 22 20 39 39 H 1.08994 * 110.37436 * 265.14585 * 23 22 20 40 40 H 1.08995 * 110.36816 * 281.68466 * 25 24 23 41 41 H 1.08997 * 110.37568 * 159.34021 * 25 24 23 42 42 H 1.09002 * 110.36495 * 143.19617 * 28 14 13 43 43 H 1.09006 * 110.36378 * 265.40416 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.6063 -3.2115 -0.6194 12 6 5.5789 -2.2661 -0.4626 13 6 6.3260 -3.4278 0.2260 14 7 5.5076 -3.8558 1.3699 15 6 5.8044 -4.8629 2.2150 16 8 5.0534 -5.1265 3.1343 17 6 7.0404 -5.6455 2.0246 18 6 7.4552 -6.6856 2.8069 19 7 8.6207 -7.1229 2.2892 20 6 9.4387 -8.2296 2.7913 21 1 10.0143 -8.6764 1.9807 22 6 10.3780 -7.7414 3.9169 23 6 9.9462 -8.5657 5.1500 24 8 9.3293 -9.7516 4.6036 25 6 8.5507 -9.2912 3.4776 26 7 8.8997 -6.3144 1.1781 27 7 7.9500 -5.4538 1.0540 28 6 4.3117 -2.9968 1.4432 29 1 -0.4851 0.8401 0.0004 30 1 3.8646 -0.3620 0.0004 31 1 5.6557 -2.3441 -1.5471 32 1 5.9623 -1.3065 -0.1159 33 1 7.3017 -3.0890 0.5742 34 1 6.4466 -4.2550 -0.4737 35 1 6.9452 -7.0842 3.6714 36 1 11.4176 -7.9489 3.6636 37 1 10.2354 -6.6761 4.0980 38 1 10.8154 -8.8327 5.7511 39 1 9.2277 -8.0055 5.7483 40 1 7.6182 -8.8422 3.8194 41 1 8.3478 -10.1155 2.7940 42 1 3.4455 -3.5786 1.7582 43 1 4.4815 -2.1681 2.1307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019621297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:57 Heat of formation + Delta-G solvation = 53.810148 kcal Electronic energy + Delta-G solvation = -26643.872927 eV Core-core repulsion = 22727.582946 eV Total energy + Delta-G solvation = -3916.289981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.61788 -40.14111 -39.47116 -37.31321 -35.16525 -34.21759 -31.79137 -31.72680 -30.95955 -29.87074 -29.50772 -27.84534 -25.07146 -24.15584 -23.44635 -22.82120 -22.06723 -21.32619 -20.33876 -19.67128 -18.23900 -17.57663 -17.35459 -16.66479 -16.29910 -16.11822 -15.87062 -15.53231 -15.17190 -14.86687 -14.46081 -14.07054 -13.95212 -13.69065 -13.28260 -13.13049 -12.85794 -12.75728 -12.61040 -12.41956 -12.28236 -12.24135 -11.86738 -11.73856 -11.39878 -11.18442 -10.86525 -10.73136 -10.66307 -10.62205 -10.43542 -10.05231 -10.00579 -9.62234 -9.55424 -9.02387 -8.36602 -7.36160 -5.80658 -3.18682 0.79481 1.50749 1.57048 3.05431 3.11323 3.29942 3.36048 3.38449 3.44314 3.59152 3.64649 3.93345 4.01367 4.21627 4.30862 4.41811 4.55623 4.58167 4.75254 4.85637 4.90800 4.98001 5.00556 5.04980 5.12835 5.21275 5.27129 5.45003 5.52296 5.64289 5.78493 5.83629 5.95502 6.02210 6.05109 6.19340 6.34361 6.49021 6.55136 6.80703 7.61606 7.72205 7.94187 8.24039 8.37947 9.14626 9.86444 10.04519 11.37040 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.033689 B = 0.002339 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.923442 B =11969.871476 C =12319.749629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.252 4.252 8 H 0.093 0.907 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.074 0.926 12 C -0.145 4.145 13 C 0.114 3.886 14 N -0.598 5.598 15 C 0.610 3.390 16 O -0.543 6.543 17 C -0.085 4.085 18 C 0.086 3.914 19 N -0.357 5.357 20 C 0.118 3.882 21 H 0.130 0.870 22 C -0.167 4.167 23 C 0.041 3.959 24 O -0.359 6.359 25 C 0.036 3.964 26 N -0.064 5.064 27 N -0.197 5.197 28 C 0.084 3.916 29 H 0.261 0.739 30 H 0.364 0.636 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.203 0.797 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.320 -18.309 6.962 31.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.111 0.889 9 N -0.378 5.378 10 C 0.065 3.935 11 H 0.092 0.908 12 C -0.184 4.184 13 C -0.009 4.009 14 N -0.330 5.330 15 C 0.395 3.605 16 O -0.420 6.420 17 C -0.224 4.224 18 C -0.070 4.070 19 N -0.144 5.144 20 C 0.015 3.985 21 H 0.148 0.852 22 C -0.205 4.205 23 C -0.035 4.035 24 O -0.277 6.277 25 C -0.043 4.043 26 N -0.044 5.044 27 N -0.071 5.071 28 C -0.041 4.041 29 H 0.071 0.929 30 H 0.198 0.802 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.220 0.780 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 24.680 -18.503 6.429 31.508 hybrid contribution 0.038 1.192 0.816 1.445 sum 24.718 -17.310 7.245 31.034 Atomic orbital electron populations 1.69702 1.05135 1.25969 1.56829 1.24689 0.95244 0.97285 1.01585 0.86554 0.79245 0.84914 0.77822 1.20956 1.21680 1.20238 1.19084 0.80294 0.94925 1.43809 0.88948 1.42660 1.04179 1.01501 1.89417 1.21283 0.90181 0.89733 0.92274 0.90818 1.22988 0.96686 0.97878 1.00854 1.22044 0.94074 0.97282 0.87526 1.48285 1.24561 1.31497 1.28611 1.16361 0.83084 0.79229 0.81813 1.90817 1.50169 1.69022 1.32016 1.21517 1.00136 1.02506 0.98224 1.23241 0.87929 0.95670 1.00149 1.50481 1.16585 1.25333 1.21971 1.23040 0.92284 0.84313 0.98872 0.85171 1.23437 1.00782 1.02230 0.94100 1.23542 0.98582 0.86057 0.95348 1.89252 1.64912 1.29068 1.44449 1.23874 0.94233 0.97227 0.88930 1.82038 1.18544 1.01676 1.02113 1.74767 0.99301 1.14907 1.18104 1.23397 0.85995 0.93048 1.01626 0.92933 0.80213 0.89852 0.90796 0.91238 0.90880 0.78037 0.88278 0.89072 0.87805 0.91262 0.90485 0.86800 0.90371 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.97 55.49 0.78 -28.11 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.68 27.74 -169.99 -4.71 16.96 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 7 C -0.25 -6.94 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.74 -16.83 5.08 -51.36 -0.26 -17.09 16 10 C 0.18 3.31 3.69 -65.79 -0.24 3.07 16 11 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 12 C -0.15 -2.13 6.57 -24.89 -0.16 -2.29 16 13 C 0.11 1.59 5.52 -3.06 -0.02 1.57 16 14 N -0.60 -9.73 3.33 -171.74 -0.57 -10.30 16 15 C 0.61 9.90 7.85 -12.48 -0.10 9.81 16 16 O -0.54 -10.18 17.12 5.28 0.09 -10.09 16 17 C -0.08 -1.12 6.85 -83.55 -0.57 -1.69 16 18 C 0.09 0.83 10.27 -16.83 -0.17 0.66 16 19 N -0.36 -3.03 3.54 -53.04 -0.19 -3.22 16 20 C 0.12 0.60 4.28 -66.36 -0.28 0.31 16 21 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 22 C -0.17 -0.67 6.88 -25.16 -0.17 -0.84 16 23 C 0.04 0.16 7.63 37.94 0.29 0.45 16 24 O -0.36 -2.17 11.65 -35.23 -0.41 -2.58 16 25 C 0.04 0.16 7.18 37.94 0.27 0.44 16 26 N -0.06 -0.74 13.78 60.35 0.83 0.09 16 27 N -0.20 -2.59 9.78 32.85 0.32 -2.27 16 28 C 0.08 1.56 6.60 -2.53 -0.02 1.54 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.36 8.12 5.57 -40.82 -0.23 7.89 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 33 H 0.07 0.92 7.74 -51.93 -0.40 0.51 16 34 H 0.07 0.97 7.61 -51.93 -0.39 0.58 16 35 H 0.20 1.43 6.88 -52.49 -0.36 1.07 16 36 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.46 7.96 -51.93 -0.41 0.05 16 38 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.34 5.96 -51.93 -0.31 0.03 16 41 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -34.54 355.25 -6.12 -40.66 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.91 Total: 4.52 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.43 Total: 6.07 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.91 Total: -60.90 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.32 Total: -12.67 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.54 -6.12 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019621297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.472 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds