Wall clock time and date at job start Fri Apr 10 2020 18:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48496 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47271 * 300.00071 * 3 2 1 6 6 H 1.48499 * 109.47059 * 59.99880 * 3 2 1 7 7 C 1.38810 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99935 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85132 * 25.32863 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52601 * 10 9 7 13 13 C 1.53777 * 87.08336 * 140.06028 * 12 10 9 14 14 H 1.08998 * 113.61354 * 219.93545 * 13 12 10 15 15 N 1.46500 * 113.61088 * 89.11940 * 13 12 10 16 16 C 1.34772 * 120.00149 * 155.00452 * 15 13 12 17 17 O 1.21604 * 119.99869 * 359.97438 * 16 15 13 18 18 C 1.47519 * 120.00382 * 179.97438 * 16 15 13 19 19 C 1.36600 * 125.77603 * 179.71160 * 18 16 15 20 20 N 1.34809 * 106.83977 * 179.89637 * 19 18 16 21 21 C 1.46503 * 126.59196 * 180.13297 * 20 19 18 22 22 H 1.08997 * 110.45512 * 207.85296 * 21 20 19 23 23 C 1.54511 * 110.51378 * 85.24202 * 21 20 19 24 24 C 1.54471 * 104.06491 * 241.35797 * 23 21 20 25 25 O 1.44422 * 104.80656 * 23.97705 * 24 23 21 26 26 C 1.44426 * 105.27539 * 319.49065 * 25 24 23 27 27 N 1.40203 * 106.81405 * 0.35519 * 20 19 18 28 28 N 1.28761 * 108.37008 * 359.77450 * 27 20 19 29 29 C 1.53775 * 87.07992 * 334.56762 * 13 12 10 30 30 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00212 * 359.97438 * 9 7 2 32 32 H 1.08997 * 113.61673 * 254.61577 * 12 10 9 33 33 H 1.09009 * 113.61202 * 25.42807 * 12 10 9 34 34 H 0.96999 * 119.99703 * 334.99353 * 15 13 12 35 35 H 1.08001 * 126.57455 * 0.04000 * 19 18 16 36 36 H 1.08996 * 110.50954 * 0.02562 * 23 21 20 37 37 H 1.08998 * 110.51165 * 122.57097 * 23 21 20 38 38 H 1.08997 * 110.37852 * 142.81105 * 24 23 21 39 39 H 1.09004 * 110.37129 * 265.03565 * 24 23 21 40 40 H 1.09003 * 110.37331 * 281.68198 * 26 25 24 41 41 H 1.09000 * 110.37290 * 159.34127 * 26 25 24 42 42 H 1.08993 * 113.61636 * 270.87622 * 29 13 12 43 43 H 1.09008 * 113.61006 * 139.97865 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0558 -3.5691 0.4321 12 6 1.2466 -4.8363 0.5628 13 6 1.8628 -5.6911 -0.5571 14 1 1.1599 -6.3907 -1.0094 15 7 3.1318 -6.3209 -0.1839 16 6 3.5329 -7.4480 -0.8044 17 8 2.8412 -7.9425 -1.6737 18 6 4.8109 -8.0819 -0.4290 19 6 5.3266 -9.2234 -0.9739 20 7 6.5020 -9.4549 -0.3557 21 6 7.4183 -10.5693 -0.6107 22 1 7.9927 -10.8029 0.2857 23 6 8.3625 -10.2356 -1.7873 24 6 8.0412 -11.3152 -2.8443 25 8 6.6965 -11.7434 -2.5376 26 6 6.6382 -11.8112 -1.0961 27 7 6.6765 -8.4271 0.5817 28 7 5.6623 -7.6371 0.5112 29 6 2.0332 -4.3858 -1.3521 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.5533 -5.1406 1.5635 33 1 0.1681 -4.7067 0.4719 34 1 3.6834 -5.9265 0.5097 35 1 4.8796 -9.8238 -1.7525 36 1 8.1479 -9.2413 -2.1789 37 1 9.4038 -10.3041 -1.4726 38 1 8.0845 -10.8896 -3.8468 39 1 8.7363 -12.1503 -2.7571 40 1 7.1169 -12.7232 -0.7394 41 1 5.6037 -11.7665 -0.7556 42 1 1.1699 -4.1338 -1.9679 43 1 2.9752 -4.3265 -1.8974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020893954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:06 Heat of formation + Delta-G solvation = 58.621954 kcal Electronic energy + Delta-G solvation = -26179.672102 eV Core-core repulsion = 22263.590776 eV Total energy + Delta-G solvation = -3916.081325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.59402 -40.15428 -39.63816 -37.80653 -35.02888 -33.97751 -32.57507 -31.84886 -30.95004 -29.80899 -29.45148 -25.23781 -25.06018 -24.36627 -23.60900 -23.24261 -22.03986 -21.33529 -20.75843 -18.88401 -18.56691 -17.27719 -17.05399 -16.76758 -16.38191 -16.20684 -15.88831 -15.32222 -15.14168 -14.77361 -14.50170 -14.34677 -13.78456 -13.66678 -13.42750 -13.27706 -12.75773 -12.62638 -12.47948 -12.19474 -12.07157 -11.96681 -11.78915 -11.61974 -11.47654 -10.92102 -10.88215 -10.74347 -10.45881 -10.27030 -10.19329 -10.03798 -9.83815 -9.55335 -9.51782 -8.86926 -8.72479 -6.93504 -5.75934 -3.04503 0.83371 1.54933 1.56008 2.99292 3.19530 3.26938 3.44927 3.50850 3.52970 3.57357 3.70266 3.95048 4.07111 4.22121 4.34276 4.44807 4.61613 4.68224 4.73399 4.79196 4.90797 4.99886 5.07493 5.10569 5.17076 5.26886 5.50029 5.52048 5.56638 5.86471 5.92007 5.98702 6.03671 6.18194 6.32216 6.38077 6.56746 6.69423 6.74854 7.13114 7.51934 7.73005 7.77933 8.25510 8.42691 9.54022 10.11669 10.46296 11.46527 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.002170 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.209812 B =12902.436463 C =13381.828567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.074 0.926 12 C -0.158 4.158 13 C 0.115 3.885 14 H 0.098 0.902 15 N -0.689 5.689 16 C 0.604 3.396 17 O -0.541 6.541 18 C -0.097 4.097 19 C 0.099 3.901 20 N -0.359 5.359 21 C 0.116 3.884 22 H 0.131 0.869 23 C -0.167 4.167 24 C 0.044 3.956 25 O -0.364 6.364 26 C 0.034 3.966 27 N -0.064 5.064 28 N -0.200 5.200 29 C -0.175 4.175 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.408 0.592 35 H 0.205 0.795 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.031 -28.285 -2.139 33.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.053 3.947 11 H 0.092 0.908 12 C -0.198 4.198 13 C 0.010 3.990 14 H 0.116 0.884 15 N -0.339 5.339 16 C 0.388 3.612 17 O -0.418 6.418 18 C -0.236 4.236 19 C -0.057 4.057 20 N -0.144 5.144 21 C 0.014 3.986 22 H 0.149 0.851 23 C -0.206 4.206 24 C -0.033 4.033 25 O -0.282 6.282 26 C -0.044 4.044 27 N -0.044 5.044 28 N -0.074 5.074 29 C -0.218 4.218 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.244 0.756 35 H 0.222 0.778 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.403 -27.931 -1.809 32.959 hybrid contribution 0.156 0.718 -0.321 0.802 sum 17.559 -27.213 -2.130 32.457 Atomic orbital electron populations 1.69669 1.05113 1.25594 1.57674 1.24766 0.95536 0.97782 1.02919 0.86116 0.78825 0.84103 0.77157 1.20533 1.21875 1.21871 1.19349 0.91120 0.84209 1.42604 0.91044 1.42404 1.05759 0.99862 1.86995 1.21640 0.95105 0.85168 0.92757 0.90786 1.23841 1.01435 0.97190 0.97346 1.21874 0.84707 0.94135 0.98258 0.88361 1.45502 1.22960 1.25422 1.39972 1.16707 0.82721 0.80408 0.81378 1.90808 1.54859 1.64277 1.31817 1.21552 1.00351 0.99147 1.02569 1.23367 0.86794 0.97508 0.98081 1.50544 1.15470 1.21141 1.27293 1.23044 0.90260 0.83842 1.01486 0.85147 1.23476 1.00549 1.01925 0.94601 1.23539 0.84170 0.95895 0.99714 1.89256 1.30244 1.88840 1.19904 1.23897 1.02455 0.95583 0.82484 1.82019 1.17464 0.95300 1.09615 1.74667 0.99085 1.19669 1.13932 1.24306 1.02010 0.95012 1.00429 0.93533 0.78023 0.91601 0.88889 0.75595 0.77800 0.89188 0.88095 0.87984 0.91089 0.88960 0.87501 0.89439 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -17.93 5.41 -52.64 -0.28 -18.22 16 10 C 0.17 3.29 4.35 -67.12 -0.29 3.00 16 11 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 12 C -0.16 -2.60 7.57 -25.92 -0.20 -2.80 16 13 C 0.12 1.82 4.32 -67.12 -0.29 1.53 16 14 H 0.10 1.57 7.46 -51.93 -0.39 1.19 16 15 N -0.69 -10.09 5.26 -54.07 -0.28 -10.37 16 16 C 0.60 9.03 7.82 -12.48 -0.10 8.93 16 17 O -0.54 -9.33 16.46 5.27 0.09 -9.24 16 18 C -0.10 -1.25 6.99 -83.55 -0.58 -1.83 16 19 C 0.10 0.98 10.05 -16.84 -0.17 0.81 16 20 N -0.36 -3.09 3.53 -53.04 -0.19 -3.28 16 21 C 0.12 0.53 4.28 -66.36 -0.28 0.25 16 22 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 23 C -0.17 -0.61 6.88 -25.17 -0.17 -0.79 16 24 C 0.04 0.15 7.63 37.93 0.29 0.44 16 25 O -0.36 -2.16 11.65 -35.23 -0.41 -2.57 16 26 C 0.03 0.13 6.65 37.94 0.25 0.38 16 27 N -0.06 -0.76 13.78 60.35 0.83 0.07 16 28 N -0.20 -2.67 12.04 32.85 0.40 -2.27 16 29 C -0.18 -3.19 7.68 -25.92 -0.20 -3.39 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.39 10.24 7.91 -40.82 -0.32 9.92 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.53 8.11 -51.92 -0.42 1.11 16 34 H 0.41 5.62 8.39 -40.82 -0.34 5.27 16 35 H 0.21 1.69 7.77 -52.49 -0.41 1.28 16 36 H 0.09 0.51 7.96 -51.93 -0.41 0.10 16 37 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 41 H 0.11 0.43 7.30 -51.93 -0.38 0.05 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 43 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -34.67 366.04 -6.65 -41.31 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.02 Total: 9.93 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.99 Total: -0.89 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 1.20 Total: -61.66 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.32 Total: -11.81 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.67 -6.65 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020893954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.937 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds