Wall clock time and date at job start Fri Apr 10 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99766 * 2 1 4 4 H 1.48496 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47271 * 300.00071 * 3 2 1 6 6 H 1.48499 * 109.47059 * 59.99880 * 3 2 1 7 7 C 1.38810 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99935 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.85132 * 25.32863 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52601 * 10 9 7 13 13 C 1.53777 * 87.08336 * 140.06028 * 12 10 9 14 14 H 1.08998 * 113.61354 * 219.93545 * 13 12 10 15 15 N 1.46500 * 113.61088 * 89.11940 * 13 12 10 16 16 C 1.34772 * 120.00149 * 155.00452 * 15 13 12 17 17 O 1.21604 * 119.99869 * 359.97438 * 16 15 13 18 18 C 1.47519 * 120.00382 * 179.97438 * 16 15 13 19 19 C 1.36600 * 125.77603 * 179.71160 * 18 16 15 20 20 N 1.34809 * 106.83977 * 179.89637 * 19 18 16 21 21 C 1.46503 * 126.59196 * 180.13297 * 20 19 18 22 22 H 1.08997 * 110.45512 * 207.85296 * 21 20 19 23 23 C 1.54511 * 110.51378 * 85.24202 * 21 20 19 24 24 C 1.54471 * 104.06491 * 241.35797 * 23 21 20 25 25 O 1.44422 * 104.80656 * 23.97705 * 24 23 21 26 26 C 1.44426 * 105.27539 * 319.49065 * 25 24 23 27 27 N 1.40203 * 106.81405 * 0.35519 * 20 19 18 28 28 N 1.28761 * 108.37008 * 359.77450 * 27 20 19 29 29 C 1.53775 * 87.07992 * 334.56762 * 13 12 10 30 30 H 0.96998 * 120.00051 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00212 * 359.97438 * 9 7 2 32 32 H 1.08997 * 113.61673 * 254.61577 * 12 10 9 33 33 H 1.09009 * 113.61202 * 25.42807 * 12 10 9 34 34 H 0.96999 * 119.99703 * 334.99353 * 15 13 12 35 35 H 1.08001 * 126.57455 * 0.04000 * 19 18 16 36 36 H 1.08996 * 110.50954 * 0.02562 * 23 21 20 37 37 H 1.08998 * 110.51165 * 122.57097 * 23 21 20 38 38 H 1.08997 * 110.37852 * 142.81105 * 24 23 21 39 39 H 1.09004 * 110.37129 * 265.03565 * 24 23 21 40 40 H 1.09003 * 110.37331 * 281.68198 * 26 25 24 41 41 H 1.09000 * 110.37290 * 159.34127 * 26 25 24 42 42 H 1.08993 * 113.61636 * 270.87622 * 29 13 12 43 43 H 1.09008 * 113.61006 * 139.97865 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0558 -3.5691 0.4321 12 6 1.2466 -4.8363 0.5628 13 6 1.8628 -5.6911 -0.5571 14 1 1.1599 -6.3907 -1.0094 15 7 3.1318 -6.3209 -0.1839 16 6 3.5329 -7.4480 -0.8044 17 8 2.8412 -7.9425 -1.6737 18 6 4.8109 -8.0819 -0.4290 19 6 5.3266 -9.2234 -0.9739 20 7 6.5020 -9.4549 -0.3557 21 6 7.4183 -10.5693 -0.6107 22 1 7.9927 -10.8029 0.2857 23 6 8.3625 -10.2356 -1.7873 24 6 8.0412 -11.3152 -2.8443 25 8 6.6965 -11.7434 -2.5376 26 6 6.6382 -11.8112 -1.0961 27 7 6.6765 -8.4271 0.5817 28 7 5.6623 -7.6371 0.5112 29 6 2.0332 -4.3858 -1.3521 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.5533 -5.1406 1.5635 33 1 0.1681 -4.7067 0.4719 34 1 3.6834 -5.9265 0.5097 35 1 4.8796 -9.8238 -1.7525 36 1 8.1479 -9.2413 -2.1789 37 1 9.4038 -10.3041 -1.4726 38 1 8.0845 -10.8896 -3.8468 39 1 8.7363 -12.1503 -2.7571 40 1 7.1169 -12.7232 -0.7394 41 1 5.6037 -11.7665 -0.7556 42 1 1.1699 -4.1338 -1.9679 43 1 2.9752 -4.3265 -1.8974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020893954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:05 Heat of formation + Delta-G solvation = 31.746231 kcal Electronic energy + Delta-G solvation = -26180.837520 eV Core-core repulsion = 22263.590776 eV Total energy + Delta-G solvation = -3917.246744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.41745 -41.08038 -40.39746 -39.19861 -35.82641 -35.60217 -34.09954 -32.44428 -32.06445 -31.39439 -29.88795 -26.71029 -26.49259 -25.47273 -24.70069 -23.74775 -23.45812 -22.01395 -21.72006 -20.35174 -19.49258 -19.02912 -17.79900 -17.38159 -17.18055 -17.06737 -16.70650 -16.66162 -16.00823 -15.91971 -15.74195 -15.55084 -15.41123 -15.08412 -14.28417 -13.96564 -13.78588 -13.57251 -13.44724 -13.40123 -13.29622 -12.95464 -12.84302 -12.62875 -12.59993 -12.28609 -12.20864 -12.10983 -11.86004 -11.74345 -11.52561 -11.29589 -11.19770 -10.84840 -10.83933 -10.47750 -10.02425 -8.97884 -7.94312 -5.22505 0.03085 0.53552 0.91533 1.47924 1.48253 1.58459 2.02919 2.16088 2.56887 2.73663 3.07850 3.23590 3.33578 3.37018 3.60371 3.70676 3.76367 3.83723 3.86624 3.91431 3.97447 4.11452 4.30163 4.32482 4.33936 4.39773 4.54954 4.61489 4.73024 4.77061 4.81187 4.88213 4.92679 4.93530 5.13677 5.21065 5.24082 5.33838 5.51221 5.65820 5.67894 6.28096 6.39235 6.82449 7.08564 7.34391 8.10685 8.34053 9.29027 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.002170 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.209812 B =12902.436463 C =13381.828567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.726 5.726 10 C 0.150 3.850 11 H 0.076 0.924 12 C -0.141 4.141 13 C 0.135 3.865 14 H 0.102 0.898 15 N -0.687 5.687 16 C 0.607 3.393 17 O -0.567 6.567 18 C -0.119 4.119 19 C 0.114 3.886 20 N -0.342 5.342 21 C 0.105 3.895 22 H 0.155 0.845 23 C -0.162 4.162 24 C 0.043 3.957 25 O -0.391 6.391 26 C 0.036 3.964 27 N -0.078 5.078 28 N -0.221 5.221 29 C -0.170 4.170 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.414 0.586 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.160 -30.341 -1.904 35.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.364 5.364 10 C 0.041 3.959 11 H 0.094 0.906 12 C -0.181 4.181 13 C 0.029 3.971 14 H 0.120 0.880 15 N -0.336 5.336 16 C 0.392 3.608 17 O -0.446 6.446 18 C -0.259 4.259 19 C -0.044 4.044 20 N -0.127 5.127 21 C 0.005 3.995 22 H 0.172 0.828 23 C -0.200 4.200 24 C -0.034 4.034 25 O -0.310 6.310 26 C -0.042 4.042 27 N -0.058 5.058 28 N -0.095 5.095 29 C -0.212 4.212 30 H 0.060 0.940 31 H 0.208 0.792 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.250 0.750 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 19.608 -30.042 -1.558 35.908 hybrid contribution -0.392 1.190 -0.439 1.328 sum 19.216 -28.851 -1.996 34.722 Atomic orbital electron populations 1.69815 1.06532 1.25964 1.59620 1.25562 0.96413 1.01081 1.03862 0.85095 0.78224 0.79963 0.76621 1.19156 1.22173 1.21973 1.19714 0.91483 0.85408 1.40786 0.90693 1.42569 1.05450 1.00925 1.87407 1.21952 0.95423 0.84221 0.94349 0.90638 1.23669 1.01042 0.94954 0.98407 1.21599 0.85269 0.93173 0.97090 0.87998 1.45446 1.22586 1.25465 1.40108 1.16932 0.83130 0.80049 0.80693 1.90788 1.55869 1.64967 1.32936 1.21363 1.00071 1.00472 1.03951 1.23545 0.86833 0.96466 0.97586 1.50840 1.15267 1.20951 1.25619 1.23584 0.90121 0.82819 1.02994 0.82770 1.23476 1.01608 1.00767 0.94174 1.23676 0.83694 0.96544 0.99464 1.89231 1.31650 1.89053 1.21097 1.24042 1.02451 0.96124 0.81576 1.81922 1.17162 0.96058 1.10625 1.74640 0.99605 1.20642 1.14589 1.24149 1.01366 0.96284 0.99438 0.94031 0.79213 0.89830 0.88754 0.74990 0.76258 0.91452 0.85719 0.88230 0.88728 0.85910 0.88023 0.90441 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.24 -13.60 9.97 84.03 0.84 -12.77 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -36.88 5.41 -320.44 -1.73 -38.62 16 10 C 0.15 5.94 4.35 45.52 0.20 6.14 16 11 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 12 C -0.14 -4.50 7.57 31.12 0.24 -4.26 16 13 C 0.13 4.14 4.32 45.51 0.20 4.34 16 14 H 0.10 3.16 7.46 -2.39 -0.02 3.14 16 15 N -0.69 -19.59 5.26 -443.22 -2.33 -21.92 16 16 C 0.61 17.80 7.82 86.69 0.68 18.48 16 17 O -0.57 -19.26 16.46 -4.04 -0.07 -19.32 16 18 C -0.12 -2.99 6.99 40.81 0.29 -2.70 16 19 C 0.11 2.13 10.05 83.85 0.84 2.97 16 20 N -0.34 -5.32 3.53 -321.72 -1.14 -6.45 16 21 C 0.11 0.68 4.28 46.01 0.20 0.88 16 22 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 23 C -0.16 -0.81 6.88 31.61 0.22 -0.59 16 24 C 0.04 0.19 7.63 72.48 0.55 0.74 16 25 O -0.39 -3.81 11.65 -148.98 -1.74 -5.55 16 26 C 0.04 0.17 6.65 72.49 0.48 0.65 16 27 N -0.08 -1.75 13.78 37.02 0.51 -1.24 16 28 N -0.22 -5.78 12.04 -49.99 -0.60 -6.38 16 29 C -0.17 -6.19 7.68 31.12 0.24 -5.95 16 30 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.38 20.33 7.91 -92.71 -0.73 19.60 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 3.03 8.11 -2.38 -0.02 3.01 16 34 H 0.41 11.06 8.39 -92.71 -0.78 10.28 16 35 H 0.22 3.35 7.77 -2.91 -0.02 3.32 16 36 H 0.07 0.68 7.96 -2.39 -0.02 0.66 16 37 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 -0.01 8.14 -2.39 -0.02 -0.02 16 40 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.10 0.60 7.30 -2.39 -0.02 0.58 16 42 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -75.01 366.04 0.19 -74.82 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.45 Total: 31.41 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.43 Total: 3.92 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -5.01 Total: -134.15 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -1.80 Total: -24.87 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -75.01 0.19 -74.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020893954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.570 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds