Wall clock time and date at job start Fri Apr 10 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00198 * 2 1 4 4 H 1.48501 * 109.46920 * 269.99853 * 3 2 1 5 5 H 1.48496 * 109.47167 * 29.99843 * 3 2 1 6 6 H 1.48504 * 109.46871 * 150.00164 * 3 2 1 7 7 C 1.38819 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99450 * 0.02562 * 7 2 1 9 9 N 1.36925 * 119.99952 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00034 * 180.02562 * 9 7 2 11 11 H 1.08995 * 110.40950 * 36.01680 * 10 9 7 12 12 C 1.54833 * 110.45742 * 273.54320 * 10 9 7 13 13 C 1.54834 * 102.73807 * 202.92872 * 12 10 9 14 14 C 1.54150 * 104.34549 * 38.22865 * 13 12 10 15 15 H 1.08997 * 111.89436 * 99.85001 * 14 13 12 16 16 C 1.54462 * 108.79502 * 224.04728 * 14 13 12 17 17 N 1.48340 * 104.30855 * 138.54363 * 16 14 13 18 18 C 1.34773 * 128.20007 * 138.23100 * 17 16 14 19 19 O 1.21279 * 120.00482 * 180.02562 * 18 17 16 20 20 C 1.50705 * 119.99865 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.47327 * 179.97438 * 20 18 17 22 22 C 1.36592 * 127.12312 * 265.03003 * 21 20 18 23 23 N 1.30329 * 107.28062 * 179.97438 * 22 21 20 24 24 N 1.28539 * 109.99621 * 359.97438 * 23 22 21 25 25 C 1.31036 * 109.85798 * 359.72392 * 24 23 22 26 26 O 1.35530 * 126.44815 * 180.30327 * 25 24 23 27 27 C 1.48343 * 103.60847 * 318.23391 * 17 16 14 28 28 C 1.53826 * 110.54777 * 158.50894 * 10 9 7 29 29 H 1.08996 * 112.55936 * 19.47812 * 28 10 9 30 30 H 0.96999 * 119.99737 * 0.02562 * 1 2 3 31 31 H 0.97007 * 120.00289 * 359.97438 * 9 7 2 32 32 H 1.09004 * 110.75569 * 84.62064 * 12 10 9 33 33 H 1.08999 * 110.91715 * 321.31691 * 12 10 9 34 34 H 1.08995 * 110.45804 * 279.51822 * 13 12 10 35 35 H 1.08996 * 110.56904 * 156.99692 * 13 12 10 36 36 H 1.09003 * 110.46703 * 19.83961 * 16 14 13 37 37 H 1.08995 * 110.46747 * 257.24846 * 16 14 13 38 38 H 1.08997 * 109.47366 * 300.00193 * 20 18 17 39 39 H 1.09003 * 109.46656 * 60.00205 * 20 18 17 40 40 H 1.07994 * 126.36377 * 359.96085 * 22 21 20 41 41 H 0.96705 * 113.99675 * 270.16183 * 26 25 24 42 42 H 1.09002 * 110.46781 * 160.47037 * 27 17 16 43 43 H 1.08997 * 110.46296 * 282.92917 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1119 -2.4711 0.0000 11 1 3.5862 -3.2135 -0.6003 12 6 4.3054 -2.9843 1.4480 13 6 5.5341 -3.9175 1.3181 14 6 6.4577 -3.1959 0.3169 15 1 7.2594 -2.6556 0.8201 16 6 7.0036 -4.2308 -0.6915 17 7 6.9408 -3.5357 -2.0005 18 6 7.8553 -3.5385 -2.9904 19 8 7.6496 -2.9114 -4.0079 20 6 9.1342 -4.3200 -2.8325 21 7 9.9539 -4.1636 -4.0366 22 6 10.0038 -5.0012 -5.1144 23 7 10.8565 -4.4941 -5.9596 24 7 11.3433 -3.4009 -5.4904 25 6 10.8193 -3.1481 -4.3163 26 8 11.0895 -2.0800 -3.5270 27 6 5.6330 -2.8366 -1.9620 28 6 5.5424 -2.2687 -0.5283 29 1 5.8619 -1.2277 -0.4818 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3623 -0.0011 32 1 3.4299 -3.5422 1.7803 33 1 4.5171 -2.1593 2.1282 34 1 5.2343 -4.8898 0.9273 35 1 6.0316 -4.0318 2.2811 36 1 6.3747 -5.1210 -0.7022 37 1 8.0332 -4.4933 -0.4485 38 1 9.6833 -3.9475 -1.9678 39 1 8.8999 -5.3747 -2.6874 40 1 9.4414 -5.9142 -5.2424 41 1 11.8217 -2.2211 -2.9113 42 1 5.6108 -2.0291 -2.6939 43 1 4.8199 -3.5388 -2.1458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026244562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:25 Heat of formation + Delta-G solvation = 44.287842 kcal Electronic energy + Delta-G solvation = -27172.503121 eV Core-core repulsion = 23255.800222 eV Total energy + Delta-G solvation = -3916.702899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.36528 -40.61151 -38.87741 -38.02613 -35.54555 -35.17424 -33.55084 -31.34778 -30.50370 -30.14737 -28.97773 -28.24886 -25.36267 -24.16688 -22.86972 -22.69996 -22.48536 -20.59203 -19.75363 -19.49859 -19.14783 -17.90677 -17.53337 -17.30128 -16.48747 -16.08448 -15.83671 -15.76564 -15.32743 -14.75078 -14.60814 -14.26411 -14.00537 -13.60970 -13.29681 -12.81251 -12.78478 -12.74834 -12.70148 -12.27802 -12.05682 -11.97840 -11.49246 -11.32714 -11.01601 -10.90172 -10.83993 -10.60867 -10.60071 -10.52786 -10.45538 -10.10612 -10.00345 -9.65472 -9.51775 -9.05241 -8.97618 -7.34377 -5.83933 -3.20301 1.20186 1.60269 2.12559 2.46499 2.59476 3.32225 3.32541 3.35950 3.41795 3.85359 3.94452 4.20315 4.26102 4.30710 4.53031 4.53443 4.60468 4.86590 4.96121 5.07730 5.12795 5.22908 5.32331 5.42769 5.45425 5.49125 5.52916 5.63424 5.69465 5.78964 5.87078 5.96690 6.02558 6.09072 6.10697 6.26773 6.39331 6.61798 6.80555 6.92750 7.18454 7.69640 7.90949 8.31360 8.35120 9.12600 9.85318 10.03787 11.34188 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.002883 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.406000 B = 9710.065135 C =10394.813202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.745 5.745 10 C 0.190 3.810 11 H 0.064 0.936 12 C -0.141 4.141 13 C -0.117 4.117 14 C -0.101 4.101 15 H 0.087 0.913 16 C 0.100 3.900 17 N -0.621 5.621 18 C 0.515 3.485 19 O -0.520 6.520 20 C 0.095 3.905 21 N -0.474 5.474 22 C 0.175 3.825 23 N -0.280 5.280 24 N -0.286 5.286 25 C 0.364 3.636 26 O -0.432 6.432 27 C 0.114 3.886 28 C -0.109 4.109 29 H 0.087 0.913 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.226 0.774 41 H 0.404 0.596 42 H 0.083 0.917 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.955 -14.540 1.705 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.079 3.921 11 H 0.082 0.918 12 C -0.182 4.182 13 C -0.156 4.156 14 C -0.121 4.121 15 H 0.105 0.895 16 C -0.022 4.022 17 N -0.355 5.355 18 C 0.301 3.699 19 O -0.395 6.395 20 C -0.033 4.033 21 N -0.178 5.178 22 C -0.112 4.112 23 N -0.120 5.120 24 N -0.136 5.136 25 C 0.059 3.941 26 O -0.231 6.231 27 C -0.007 4.007 28 C -0.129 4.129 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.242 0.758 41 H 0.261 0.739 42 H 0.102 0.898 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 22.088 -13.692 -0.420 25.991 hybrid contribution -0.064 1.010 1.771 2.039 sum 22.024 -12.683 1.350 25.451 Atomic orbital electron populations 1.69696 1.05131 1.25930 1.57174 1.24676 0.95212 0.97228 1.01815 0.86582 0.79164 0.85052 0.77879 1.21006 1.21707 1.20368 1.19038 0.80480 0.94689 1.43434 0.89165 1.42801 1.04106 1.01780 1.89989 1.21031 0.88271 0.89332 0.93454 0.91778 1.23184 0.96247 0.98450 1.00323 1.22421 0.96528 0.98588 0.98029 1.22779 0.98014 0.95828 0.95477 0.89496 1.22875 1.01544 0.95870 0.81926 1.49188 1.19633 1.50043 1.16646 1.20057 0.84262 0.82489 0.83114 1.90842 1.77490 1.43173 1.28005 1.21666 0.91129 1.03764 0.86696 1.46506 1.33786 1.19844 1.17638 1.26382 1.01767 0.98604 0.84474 1.74224 1.10463 1.03830 1.23527 1.74630 1.22695 1.10438 1.05851 1.22125 0.93712 0.85940 0.92301 1.85008 1.56539 1.28999 1.52569 1.22706 0.83011 0.97040 0.97967 1.23052 0.97266 0.99460 0.93160 0.89469 0.92979 0.80550 0.91618 0.91580 0.91478 0.91970 0.89869 0.90752 0.85864 0.85124 0.75799 0.73903 0.89833 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.97 55.49 0.78 -27.87 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 21.66 27.73 -169.99 -4.71 16.94 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.35 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.60 10.45 -15.06 -0.16 -6.76 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 N -0.74 -16.27 5.03 -52.07 -0.26 -16.53 16 10 C 0.19 3.12 3.03 -66.53 -0.20 2.92 16 11 H 0.06 1.10 7.15 -51.93 -0.37 0.72 16 12 C -0.14 -2.02 6.57 -24.80 -0.16 -2.19 16 13 C -0.12 -1.12 6.36 -25.16 -0.16 -1.28 16 14 C -0.10 -0.92 3.96 -88.03 -0.35 -1.27 16 15 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 16 C 0.10 0.67 6.46 -2.26 -0.01 0.66 16 17 N -0.62 -6.28 3.31 -168.89 -0.56 -6.84 16 18 C 0.52 5.70 7.99 -10.98 -0.09 5.62 16 19 O -0.52 -8.69 16.71 5.56 0.09 -8.60 16 20 C 0.09 0.56 5.68 -5.19 -0.03 0.53 16 21 N -0.47 -4.33 2.29 -121.04 -0.28 -4.61 16 22 C 0.17 1.60 12.80 -89.08 -1.14 0.46 16 23 N -0.28 -3.67 12.18 29.87 0.36 -3.30 16 24 N -0.29 -4.05 12.22 29.65 0.36 -3.69 16 25 C 0.36 4.20 9.22 -88.75 -0.82 3.38 16 26 O -0.43 -4.06 13.62 -18.28 -0.25 -4.31 16 27 C 0.11 1.49 6.58 -2.25 -0.01 1.47 16 28 C -0.11 -1.43 3.62 -88.20 -0.32 -1.75 16 29 H 0.09 1.26 7.80 -51.93 -0.41 0.85 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.36 7.90 5.45 -40.82 -0.22 7.68 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.56 7.18 -51.93 -0.37 0.18 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.48 7.20 -51.93 -0.37 0.11 16 37 H 0.07 0.26 7.32 -51.93 -0.38 -0.12 16 38 H 0.12 0.40 7.99 -51.93 -0.41 -0.01 16 39 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.23 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.40 1.19 9.06 45.56 0.41 1.60 16 42 H 0.08 1.30 7.88 -51.93 -0.41 0.89 16 43 H 0.08 1.06 7.21 -51.93 -0.37 0.68 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -39.26 355.39 -7.70 -46.96 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.04 Total: 4.59 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.55 Total: 1.90 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: 0.40 Total: -62.84 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.16 Total: -12.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.26 -7.70 -46.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026244562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.247 kcal (2) G-P(sol) polarization free energy of solvation -39.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds