Wall clock time and date at job start Fri Apr 10 2020 18:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99609 * 2 1 4 4 H 1.48505 * 109.47424 * 274.98785 * 3 2 1 5 5 H 1.48494 * 109.47546 * 34.99074 * 3 2 1 6 6 H 1.48499 * 109.46954 * 154.98786 * 3 2 1 7 7 C 1.38805 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99923 * 185.06388 * 7 2 1 9 9 N 1.36937 * 120.00443 * 5.06885 * 7 2 1 10 10 C 1.47576 * 134.49836 * 173.48825 * 9 7 2 11 11 C 1.53943 * 86.11959 * 155.35206 * 10 9 7 12 12 N 1.46494 * 113.74043 * 137.95102 * 11 10 9 13 13 C 1.34781 * 119.99974 * 154.99877 * 12 11 10 14 14 O 1.21592 * 119.99837 * 0.02562 * 13 12 11 15 15 C 1.47522 * 119.99689 * 179.97438 * 13 12 11 16 16 C 1.36605 * 125.76553 * 180.30484 * 15 13 12 17 17 N 1.34820 * 106.83835 * 180.17948 * 16 15 13 18 18 C 1.46498 * 126.59398 * 179.85181 * 17 16 15 19 19 C 1.53005 * 109.46896 * 124.71334 * 18 17 16 20 20 H 1.08998 * 110.43626 * 305.70037 * 19 18 17 21 21 C 1.54809 * 110.59935 * 183.07603 * 19 18 17 22 22 C 1.54991 * 102.09464 * 220.38924 * 21 19 18 23 23 O 1.44382 * 103.48966 * 37.02170 * 22 21 19 24 24 C 1.43738 * 106.97718 * 319.94464 * 23 22 21 25 25 N 1.40216 * 106.80924 * 359.59064 * 17 16 15 26 26 N 1.28759 * 108.36843 * 0.26146 * 25 17 16 27 27 C 1.47584 * 134.48525 * 353.47310 * 9 7 2 28 28 H 0.97005 * 120.00043 * 0.02562 * 1 2 3 29 29 H 1.09004 * 113.77078 * 41.04587 * 10 9 7 30 30 H 1.08997 * 113.86589 * 269.67072 * 10 9 7 31 31 H 1.09000 * 113.74230 * 269.15104 * 11 10 9 32 32 H 0.97007 * 120.00443 * 334.99977 * 12 11 10 33 33 H 1.07995 * 126.58115 * 0.03894 * 16 15 13 34 34 H 1.08996 * 109.47101 * 4.71145 * 18 17 16 35 35 H 1.08995 * 109.46625 * 244.71108 * 18 17 16 36 36 H 1.08998 * 110.90823 * 338.58897 * 21 19 18 37 37 H 1.08996 * 110.90560 * 102.18547 * 21 19 18 38 38 H 1.09000 * 110.61678 * 278.52314 * 22 21 19 39 39 H 1.08996 * 110.75574 * 155.59082 * 22 21 19 40 40 H 1.09006 * 109.87484 * 267.08502 * 24 23 22 41 41 H 1.08997 * 110.00840 * 146.00933 * 24 23 22 42 42 H 1.09001 * 113.76693 * 90.34965 * 27 9 7 43 43 H 1.08991 * 113.77280 * 318.94593 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5963 1.4122 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0871 -1.2039 0.0820 9 7 1.3296 -2.3857 -0.1058 10 6 1.7287 -3.7983 -0.2583 11 6 0.3710 -4.1420 0.3808 12 7 -0.3173 -5.2631 -0.2637 13 6 -1.2104 -5.9950 0.4314 14 8 -1.4451 -5.7244 1.5934 15 6 -1.9039 -7.1236 -0.2178 16 6 -2.8308 -7.9363 0.3708 17 7 -3.2098 -8.8348 -0.5602 18 6 -4.1868 -9.9125 -0.3870 19 6 -5.2744 -9.7916 -1.4564 20 1 -5.7172 -8.7958 -1.4380 21 6 -6.3632 -10.8727 -1.2506 22 6 -6.6619 -11.3139 -2.7061 23 8 -5.3672 -11.2707 -3.3436 24 6 -4.6958 -10.0990 -2.8512 25 7 -2.4934 -8.5356 -1.7278 26 7 -1.7346 -7.5229 -1.4900 27 6 -0.0977 -2.7609 -0.1121 28 1 -0.4850 0.8401 -0.0004 29 1 2.5861 -4.0810 0.3526 30 1 1.8205 -4.1211 -1.2953 31 1 0.4075 -4.2332 1.4663 32 1 -0.1303 -5.4787 -1.1909 33 1 -3.1894 -7.8727 1.3875 34 1 -4.6394 -9.8372 0.6017 35 1 -3.6863 -10.8758 -0.4850 36 1 -5.9779 -11.7059 -0.6629 37 1 -7.2509 -10.4467 -0.7833 38 1 -7.3491 -10.6165 -3.1851 39 1 -7.0668 -12.3256 -2.7276 40 1 -4.8775 -9.2587 -3.5212 41 1 -3.6249 -10.2872 -2.7750 42 1 -0.5432 -2.7774 -1.1068 43 1 -0.6986 -2.2155 0.6155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031164973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:31 Heat of formation + Delta-G solvation = 49.694656 kcal Electronic energy + Delta-G solvation = -26053.631011 eV Core-core repulsion = 22137.162569 eV Total energy + Delta-G solvation = -3916.468442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -43.25822 -40.82642 -40.40314 -39.10323 -36.30843 -35.13655 -33.79562 -33.27068 -31.93393 -30.38729 -29.37812 -27.61203 -26.62436 -25.73490 -24.05467 -23.91354 -22.90951 -21.91162 -21.35039 -21.25979 -19.06171 -18.75387 -17.60694 -17.43768 -17.34546 -17.09712 -16.87230 -16.68879 -15.99048 -15.81707 -15.64338 -15.53956 -15.41486 -14.63286 -14.57524 -14.12853 -13.75475 -13.68679 -13.32510 -13.22600 -13.15282 -12.82967 -12.70845 -12.63887 -12.47583 -12.34819 -12.30065 -11.98036 -11.93890 -11.80487 -11.52070 -11.28590 -11.19174 -10.88686 -10.67579 -10.38433 -9.92526 -8.96778 -7.93220 -5.27929 0.15351 0.62739 1.07154 1.46214 1.48751 1.57913 2.10953 2.25461 2.49910 2.96624 3.16139 3.24272 3.26117 3.41775 3.43519 3.70431 3.78999 3.84539 3.94512 3.99706 4.18265 4.25158 4.30171 4.32823 4.48051 4.50982 4.53015 4.69802 4.76577 4.80397 4.85437 4.90654 4.92677 4.99494 5.13122 5.15119 5.21868 5.44348 5.48134 5.66840 5.88634 5.89719 6.47808 6.88177 6.92527 7.17365 7.57576 8.51454 9.24479 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.032164 B = 0.002016 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.336927 B =13883.984796 C =14053.859889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.983 3.017 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.235 4.235 8 H 0.091 0.909 9 N -0.637 5.637 10 C 0.120 3.880 11 C 0.121 3.879 12 N -0.694 5.694 13 C 0.603 3.397 14 O -0.571 6.571 15 C -0.122 4.122 16 C 0.117 3.883 17 N -0.350 5.350 18 C 0.122 3.878 19 C -0.133 4.133 20 H 0.090 0.910 21 C -0.134 4.134 22 C 0.034 3.966 23 O -0.405 6.405 24 C 0.049 3.951 25 N -0.084 5.084 26 N -0.224 5.224 27 C 0.156 3.844 28 H 0.249 0.751 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.414 0.586 33 H 0.240 0.760 34 H 0.153 0.847 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.022 0.978 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.831 -27.752 -0.087 31.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.811 3.189 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.364 4.364 8 H 0.109 0.891 9 N -0.365 5.365 10 C -0.006 4.006 11 C 0.015 3.985 12 N -0.343 5.343 13 C 0.389 3.611 14 O -0.450 6.450 15 C -0.262 4.262 16 C -0.041 4.041 17 N -0.135 5.135 18 C 0.004 3.996 19 C -0.152 4.152 20 H 0.108 0.892 21 C -0.172 4.172 22 C -0.042 4.042 23 O -0.325 6.325 24 C -0.028 4.028 25 N -0.064 5.064 26 N -0.098 5.098 27 C 0.029 3.971 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.250 0.750 33 H 0.256 0.744 34 H 0.171 0.829 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.612 -27.816 -0.853 31.432 hybrid contribution 0.088 1.695 0.239 1.714 sum -14.524 -26.121 -0.614 29.894 Atomic orbital electron populations 1.70051 1.06711 1.25805 1.57688 1.25764 0.96600 1.01279 1.02621 0.84988 0.77943 0.78709 0.77260 1.21411 1.22183 1.18723 1.19443 0.91445 0.82891 1.42583 0.89098 1.45997 1.03329 1.02112 1.85014 1.23017 0.95352 0.83437 0.98774 1.23300 0.92893 0.84054 0.98213 1.45756 1.41486 1.30961 1.16142 1.17095 0.78552 0.80474 0.85011 1.90783 1.65801 1.71019 1.17427 1.21369 1.07761 1.04508 0.92564 1.23856 0.94100 0.87956 0.98169 1.50783 1.30324 1.23632 1.08745 1.22638 0.86628 0.87559 1.02822 1.22856 0.96056 1.02125 0.94179 0.89188 1.23149 0.98419 0.98012 0.97594 1.23818 0.85214 1.03360 0.91851 1.88888 1.30125 1.45158 1.68283 1.23284 0.97993 0.87734 0.93780 1.81860 1.06892 1.12089 1.05544 1.74638 1.15026 1.05849 1.14249 1.22497 0.87372 0.90357 0.96899 0.94192 0.91300 0.92275 0.87728 0.74980 0.74407 0.82918 0.86577 0.88015 0.87374 0.92050 0.87222 0.93730 0.89531 0.96057 0.94694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 11.51 21.65 0.25 -59.29 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.98 46.52 29.56 68.60 2.03 48.54 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.24 -13.46 10.70 84.03 0.90 -12.56 16 8 H 0.09 4.89 7.83 -2.91 -0.02 4.86 16 9 N -0.64 -33.63 3.70 -717.36 -2.65 -36.28 16 10 C 0.12 4.80 8.69 86.48 0.75 5.56 16 11 C 0.12 4.86 4.43 46.75 0.21 5.07 16 12 N -0.69 -23.17 5.36 -450.58 -2.42 -25.58 16 13 C 0.60 19.64 7.82 86.69 0.68 20.31 16 14 O -0.57 -21.57 16.46 -4.01 -0.07 -21.63 16 15 C -0.12 -3.17 6.99 40.82 0.29 -2.88 16 16 C 0.12 1.97 11.27 83.85 0.95 2.92 16 17 N -0.35 -5.16 3.69 -347.10 -1.28 -6.44 16 18 C 0.12 0.66 5.71 86.38 0.49 1.15 16 19 C -0.13 -1.03 3.27 -9.80 -0.03 -1.07 16 20 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 21 C -0.13 -0.42 6.71 31.89 0.21 -0.21 16 22 C 0.03 0.28 7.72 72.66 0.56 0.84 16 23 O -0.40 -6.86 11.52 -148.98 -1.72 -8.58 16 24 C 0.05 0.75 6.60 72.35 0.48 1.23 16 25 N -0.08 -1.91 11.63 37.02 0.43 -1.48 16 26 N -0.22 -6.08 12.04 -49.99 -0.60 -6.68 16 27 C 0.16 7.85 7.23 86.48 0.63 8.47 16 28 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 29 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.06 2.17 8.12 -2.39 -0.02 2.15 16 31 H 0.10 4.43 7.46 -2.39 -0.02 4.41 16 32 H 0.41 12.48 8.42 -92.70 -0.78 11.70 16 33 H 0.24 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.15 -0.37 8.08 -2.39 -0.02 -0.39 16 35 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.10 0.01 7.88 -2.39 -0.02 -0.01 16 37 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.56 16 40 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 1.53 6.38 -2.39 -0.02 1.52 16 42 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.03 2.01 7.35 -2.39 -0.02 1.99 16 Total: -1.00 -80.62 362.44 0.81 -79.82 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.26 Total: 12.38 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 6.57 Total: 25.23 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -6.27 Total: -135.76 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.78 Total: -30.21 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -80.62 0.81 -79.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031164973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.510 kcal (2) G-P(sol) polarization free energy of solvation -80.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds