Wall clock time and date at job start Fri Apr 10 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48498 * 109.46900 * 269.99738 * 3 2 1 5 5 H 1.48499 * 109.47309 * 30.00087 * 3 2 1 6 6 H 1.48505 * 109.47081 * 150.00119 * 3 2 1 7 7 C 1.38814 * 119.99485 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99376 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00524 * 0.02562 * 7 2 1 10 10 C 1.47660 * 134.45841 * 180.02562 * 9 7 2 11 11 C 1.53516 * 85.97825 * 204.32821 * 10 9 7 12 12 C 1.47674 * 134.45375 * 0.02562 * 9 7 2 13 13 C 1.52670 * 113.56744 * 222.22944 * 11 10 9 14 14 C 1.53344 * 109.11400 * 286.18588 * 13 11 10 15 15 N 1.46888 * 108.75856 * 307.58838 * 14 13 11 16 16 C 1.34774 * 120.46971 * 235.52159 * 15 14 13 17 17 O 1.21273 * 120.00062 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99750 * 0.02562 * 16 15 14 19 19 N 1.46500 * 109.46900 * 180.02562 * 18 16 15 20 20 C 1.36608 * 127.11898 * 265.02408 * 19 18 16 21 21 N 1.30327 * 107.28048 * 179.97438 * 20 19 18 22 22 N 1.28537 * 109.99618 * 0.02562 * 21 20 19 23 23 C 1.31040 * 109.85710 * 359.71433 * 22 21 20 24 24 O 1.35536 * 126.45022 * 180.30646 * 23 22 21 25 25 C 1.46888 * 119.06103 * 55.53841 * 15 14 13 26 26 C 1.52671 * 113.56383 * 91.01311 * 11 10 9 27 27 H 0.97003 * 119.99428 * 359.97438 * 1 2 3 28 28 H 1.08997 * 113.79624 * 90.06592 * 10 9 7 29 29 H 1.09004 * 113.79376 * 318.59557 * 10 9 7 30 30 H 1.09001 * 113.78524 * 41.40322 * 12 9 7 31 31 H 1.08990 * 113.79090 * 269.93258 * 12 9 7 32 32 H 1.08997 * 109.52828 * 46.07283 * 13 11 10 33 33 H 1.08997 * 109.53039 * 166.29544 * 13 11 10 34 34 H 1.08994 * 109.58657 * 187.80678 * 14 13 11 35 35 H 1.08996 * 109.59095 * 67.36819 * 14 13 11 36 36 H 1.09000 * 109.47342 * 300.00403 * 18 16 15 37 37 H 1.09006 * 109.46790 * 60.00664 * 18 16 15 38 38 H 1.07998 * 126.35723 * 0.03894 * 20 19 18 39 39 H 0.96705 * 113.99722 * 270.16655 * 24 23 22 40 40 H 1.09001 * 109.58768 * 184.67221 * 25 15 14 41 41 H 1.08999 * 109.58832 * 64.23916 * 25 15 14 42 42 H 1.09000 * 109.53307 * 193.69994 * 26 11 10 43 43 H 1.09000 * 109.53728 * 313.92271 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7212 -3.8107 0.0015 11 6 0.3484 -4.0811 -0.6303 12 6 -0.1045 -2.7567 -0.0004 13 6 -0.3582 -5.3057 -0.0541 14 6 0.3240 -6.5736 -0.5818 15 7 0.3945 -6.4972 -2.0470 16 6 -0.1267 -7.4795 -2.8085 17 8 -0.0633 -7.4079 -4.0174 18 6 -0.7882 -8.6668 -2.1576 19 7 -1.2687 -9.5860 -3.1922 20 6 -2.5245 -9.6414 -3.7271 21 7 -2.5263 -10.5978 -4.6124 22 7 -1.3648 -11.1452 -4.6706 23 6 -0.5537 -10.5592 -3.8244 24 8 0.7500 -10.8650 -3.6153 25 6 1.0414 -5.3352 -2.6705 26 6 0.3641 -4.0590 -2.1568 27 1 -0.4849 0.8401 0.0004 28 1 1.8371 -4.2343 0.9991 29 1 2.5603 -4.0343 -0.6574 30 1 -0.7164 -2.1423 -0.6608 31 1 -0.5307 -2.8671 0.9966 32 1 -0.2956 -5.2841 1.0338 33 1 -1.4043 -5.3004 -0.3602 34 1 -0.2555 -7.4491 -0.2890 35 1 1.3309 -6.6450 -0.1707 36 1 -0.0675 -9.1809 -1.5215 37 1 -1.6295 -8.3278 -1.5531 38 1 -3.3602 -9.0093 -3.4656 39 1 0.8924 -11.5330 -2.9306 40 1 0.9347 -5.3950 -3.7536 41 1 2.0987 -5.3197 -2.4057 42 1 -0.6586 -4.0134 -2.5311 43 1 0.9192 -3.1871 -2.5030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035691506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:38 Heat of formation + Delta-G solvation = 81.482777 kcal Electronic energy + Delta-G solvation = -27464.197815 eV Core-core repulsion = 23549.107810 eV Total energy + Delta-G solvation = -3915.090006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.30600 -40.58228 -38.94508 -37.98469 -36.04058 -35.15227 -32.63883 -31.43616 -30.72924 -30.10936 -28.65974 -26.86177 -25.15751 -23.85056 -23.52887 -22.75558 -22.51385 -21.42713 -20.07906 -19.13555 -18.24025 -17.35860 -17.13431 -16.80500 -16.25199 -16.01732 -15.54415 -15.44920 -14.95277 -14.82204 -14.60119 -14.01923 -13.88276 -13.73112 -13.62859 -12.82043 -12.76964 -12.64906 -12.51156 -12.22309 -11.93141 -11.85028 -11.26705 -11.16152 -11.09817 -10.98076 -10.91479 -10.54707 -10.44566 -10.31930 -9.98576 -9.81291 -9.67592 -9.46647 -9.45657 -8.85892 -8.69552 -6.93690 -5.82918 -3.14955 1.27789 1.67787 2.20723 2.52118 2.75440 3.34494 3.37553 3.39684 3.41348 3.96239 4.03349 4.27536 4.36744 4.39527 4.63464 4.83634 4.92927 5.02425 5.14713 5.15949 5.29457 5.31124 5.37863 5.54250 5.55271 5.68067 5.73966 5.77993 5.96813 6.10441 6.14032 6.16179 6.25252 6.46609 6.51302 6.67018 6.72562 6.97080 7.13188 7.15126 7.27688 7.50841 7.80957 7.92592 8.37110 8.99007 9.65279 10.53939 11.33979 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.002538 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.825470 B =11031.136421 C =11071.581025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.110 4.110 12 C 0.174 3.826 13 C -0.119 4.119 14 C 0.105 3.895 15 N -0.598 5.598 16 C 0.496 3.504 17 O -0.526 6.526 18 C 0.089 3.911 19 N -0.473 5.473 20 C 0.176 3.824 21 N -0.281 5.281 22 N -0.287 5.287 23 C 0.362 3.638 24 O -0.433 6.433 25 C 0.114 3.886 26 C -0.096 4.096 27 H 0.253 0.747 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.226 0.774 39 H 0.403 0.597 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -19.696 1.613 19.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.111 4.111 12 C 0.048 3.952 13 C -0.158 4.158 14 C -0.017 4.017 15 N -0.331 5.331 16 C 0.281 3.719 17 O -0.402 6.402 18 C -0.038 4.038 19 N -0.176 5.176 20 C -0.111 4.111 21 N -0.122 5.122 22 N -0.137 5.137 23 C 0.057 3.943 24 O -0.232 6.232 25 C -0.008 4.008 26 C -0.134 4.134 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.242 0.758 39 H 0.261 0.739 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.949 -19.862 -0.504 20.086 hybrid contribution 1.051 1.764 1.850 2.764 sum -1.898 -18.098 1.346 18.247 Atomic orbital electron populations 1.69810 1.04988 1.25337 1.56663 1.24764 0.95650 0.97478 1.02467 0.86155 0.78600 0.83548 0.77657 1.21514 1.21655 1.20742 1.18998 0.90216 0.82054 1.43837 0.90395 1.45942 1.02303 0.99166 1.86041 1.22590 0.94280 0.86765 0.96354 1.22418 0.98088 0.95552 0.95091 1.22230 0.88159 0.88241 0.96547 1.21844 0.99554 0.93675 1.00723 1.21889 1.01929 0.99007 0.78891 1.48107 1.56973 1.21028 1.07022 1.20437 0.79717 0.83987 0.87734 1.90798 1.57696 1.77978 1.13678 1.21801 1.02608 0.90186 0.89170 1.46521 1.11235 1.27967 1.31871 1.26397 0.87368 1.01136 0.96229 1.74218 1.13322 1.08432 1.16209 1.74615 0.97359 1.23227 1.18542 1.22103 0.86297 0.91030 0.94828 1.84994 1.14358 1.62664 1.61187 1.21774 0.96380 0.83839 0.98762 1.21493 1.00979 0.96755 0.94169 0.93656 0.95150 0.94172 0.90961 0.95712 0.90352 0.91623 0.90636 0.90485 0.85864 0.85011 0.75811 0.73949 0.89281 0.91057 0.92052 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 11.39 55.49 0.63 -25.75 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -6.00 10.70 -15.06 -0.16 -6.16 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.62 16 9 N -0.61 -14.44 3.53 -179.76 -0.63 -15.08 16 10 C 0.13 2.26 7.72 -3.15 -0.02 2.23 16 11 C -0.11 -1.72 0.77 -154.42 -0.12 -1.84 16 12 C 0.17 3.70 6.64 -3.15 -0.02 3.68 16 13 C -0.12 -1.29 5.26 -26.72 -0.14 -1.43 16 14 C 0.11 0.84 6.22 -3.65 -0.02 0.82 16 15 N -0.60 -6.37 2.94 -172.65 -0.51 -6.88 16 16 C 0.50 5.54 7.76 -10.99 -0.09 5.46 16 17 O -0.53 -8.53 15.82 5.56 0.09 -8.44 16 18 C 0.09 0.57 5.03 -5.19 -0.03 0.55 16 19 N -0.47 -4.44 2.29 -121.04 -0.28 -4.72 16 20 C 0.18 1.69 12.80 -89.07 -1.14 0.55 16 21 N -0.28 -3.75 12.18 29.87 0.36 -3.38 16 22 N -0.29 -4.08 12.22 29.65 0.36 -3.71 16 23 C 0.36 4.17 9.22 -88.76 -0.82 3.36 16 24 O -0.43 -3.95 13.62 -18.30 -0.25 -4.19 16 25 C 0.11 1.50 6.30 -3.65 -0.02 1.47 16 26 C -0.10 -1.47 5.22 -26.72 -0.14 -1.61 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.03 0.52 8.07 -51.93 -0.42 0.10 16 29 H 0.04 0.70 7.41 -51.93 -0.38 0.31 16 30 H 0.07 1.76 7.12 -51.93 -0.37 1.39 16 31 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 32 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.32 5.89 -51.93 -0.31 0.01 16 35 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.12 0.43 7.90 -51.93 -0.41 0.02 16 37 H 0.13 0.41 7.72 -51.93 -0.40 0.01 16 38 H 0.23 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.40 1.11 9.06 45.56 0.41 1.52 16 40 H 0.09 1.29 6.98 -51.93 -0.36 0.93 16 41 H 0.07 0.92 7.49 -51.93 -0.39 0.53 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.64 8.01 -51.93 -0.42 1.22 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -38.10 354.42 -7.84 -45.94 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.12 Total: -2.51 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.82 Total: 6.79 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.06 Total: -59.52 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.16 Total: -12.63 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.10 -7.84 -45.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035691506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.424 kcal (2) G-P(sol) polarization free energy of solvation -38.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds