Wall clock time and date at job start Fri Apr 10 2020 18:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48498 * 109.46900 * 269.99738 * 3 2 1 5 5 H 1.48499 * 109.47309 * 30.00087 * 3 2 1 6 6 H 1.48505 * 109.47081 * 150.00119 * 3 2 1 7 7 C 1.38814 * 119.99485 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99376 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00524 * 0.02562 * 7 2 1 10 10 C 1.47660 * 134.45841 * 180.02562 * 9 7 2 11 11 C 1.53516 * 85.97825 * 204.32821 * 10 9 7 12 12 C 1.47674 * 134.45375 * 0.02562 * 9 7 2 13 13 C 1.52670 * 113.56744 * 222.22944 * 11 10 9 14 14 C 1.53344 * 109.11400 * 286.18588 * 13 11 10 15 15 N 1.46888 * 108.75856 * 307.58838 * 14 13 11 16 16 C 1.34774 * 120.46971 * 235.52159 * 15 14 13 17 17 O 1.21273 * 120.00062 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99750 * 0.02562 * 16 15 14 19 19 N 1.46500 * 109.46900 * 180.02562 * 18 16 15 20 20 C 1.36608 * 127.11898 * 265.02408 * 19 18 16 21 21 N 1.30327 * 107.28048 * 179.97438 * 20 19 18 22 22 N 1.28537 * 109.99618 * 0.02562 * 21 20 19 23 23 C 1.31040 * 109.85710 * 359.71433 * 22 21 20 24 24 O 1.35536 * 126.45022 * 180.30646 * 23 22 21 25 25 C 1.46888 * 119.06103 * 55.53841 * 15 14 13 26 26 C 1.52671 * 113.56383 * 91.01311 * 11 10 9 27 27 H 0.97003 * 119.99428 * 359.97438 * 1 2 3 28 28 H 1.08997 * 113.79624 * 90.06592 * 10 9 7 29 29 H 1.09004 * 113.79376 * 318.59557 * 10 9 7 30 30 H 1.09001 * 113.78524 * 41.40322 * 12 9 7 31 31 H 1.08990 * 113.79090 * 269.93258 * 12 9 7 32 32 H 1.08997 * 109.52828 * 46.07283 * 13 11 10 33 33 H 1.08997 * 109.53039 * 166.29544 * 13 11 10 34 34 H 1.08994 * 109.58657 * 187.80678 * 14 13 11 35 35 H 1.08996 * 109.59095 * 67.36819 * 14 13 11 36 36 H 1.09000 * 109.47342 * 300.00403 * 18 16 15 37 37 H 1.09006 * 109.46790 * 60.00664 * 18 16 15 38 38 H 1.07998 * 126.35723 * 0.03894 * 20 19 18 39 39 H 0.96705 * 113.99722 * 270.16655 * 24 23 22 40 40 H 1.09001 * 109.58768 * 184.67221 * 25 15 14 41 41 H 1.08999 * 109.58832 * 64.23916 * 25 15 14 42 42 H 1.09000 * 109.53307 * 193.69994 * 26 11 10 43 43 H 1.09000 * 109.53728 * 313.92271 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7212 -3.8107 0.0015 11 6 0.3484 -4.0811 -0.6303 12 6 -0.1045 -2.7567 -0.0004 13 6 -0.3582 -5.3057 -0.0541 14 6 0.3240 -6.5736 -0.5818 15 7 0.3945 -6.4972 -2.0470 16 6 -0.1267 -7.4795 -2.8085 17 8 -0.0633 -7.4079 -4.0174 18 6 -0.7882 -8.6668 -2.1576 19 7 -1.2687 -9.5860 -3.1922 20 6 -2.5245 -9.6414 -3.7271 21 7 -2.5263 -10.5978 -4.6124 22 7 -1.3648 -11.1452 -4.6706 23 6 -0.5537 -10.5592 -3.8244 24 8 0.7500 -10.8650 -3.6153 25 6 1.0414 -5.3352 -2.6705 26 6 0.3641 -4.0590 -2.1568 27 1 -0.4849 0.8401 0.0004 28 1 1.8371 -4.2343 0.9991 29 1 2.5603 -4.0343 -0.6574 30 1 -0.7164 -2.1423 -0.6608 31 1 -0.5307 -2.8671 0.9966 32 1 -0.2956 -5.2841 1.0338 33 1 -1.4043 -5.3004 -0.3602 34 1 -0.2555 -7.4491 -0.2890 35 1 1.3309 -6.6450 -0.1707 36 1 -0.0675 -9.1809 -1.5215 37 1 -1.6295 -8.3278 -1.5531 38 1 -3.3602 -9.0093 -3.4656 39 1 0.8924 -11.5330 -2.9306 40 1 0.9347 -5.3950 -3.7536 41 1 2.0987 -5.3197 -2.4057 42 1 -0.6586 -4.0134 -2.5311 43 1 0.9192 -3.1871 -2.5030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035691506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:37 Heat of formation + Delta-G solvation = 51.567249 kcal Electronic energy + Delta-G solvation = -27465.495050 eV Core-core repulsion = 23549.107810 eV Total energy + Delta-G solvation = -3916.387240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.04276 -41.60467 -40.17696 -38.64957 -37.17959 -35.87168 -34.43399 -32.49055 -32.04266 -30.88949 -29.52210 -28.42960 -26.71058 -25.11235 -24.48657 -23.53488 -23.37198 -22.83740 -21.03254 -19.83146 -19.20418 -18.69410 -18.18102 -18.04203 -17.02407 -16.88354 -16.78317 -16.36951 -16.20177 -16.07738 -15.61099 -15.35368 -15.08894 -14.73528 -14.61899 -14.04051 -13.80157 -13.64476 -13.38844 -13.34887 -13.11642 -12.93212 -12.82664 -12.73214 -12.62455 -12.20118 -12.14879 -11.91695 -11.65580 -11.54863 -11.28199 -11.20141 -11.01664 -10.81222 -10.68317 -10.25229 -9.67135 -8.85915 -7.89564 -5.20465 0.58414 1.07005 1.43600 1.43725 1.44667 1.52776 1.75992 1.96498 2.47432 2.78349 3.29476 3.32407 3.44276 3.59149 3.65037 3.76100 3.96162 3.97437 4.08462 4.17285 4.25884 4.29198 4.45557 4.62481 4.65197 4.71800 4.77134 4.79985 4.89828 4.93680 4.96225 5.06662 5.15916 5.24647 5.30918 5.37807 5.47161 5.62342 5.62604 5.79437 5.99095 6.33207 6.50050 6.95325 7.00829 7.60423 7.64194 8.60932 9.27016 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.002538 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.825470 B =11031.136421 C =11071.581025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.642 5.642 10 C 0.129 3.871 11 C -0.081 4.081 12 C 0.167 3.833 13 C -0.114 4.114 14 C 0.107 3.893 15 N -0.595 5.595 16 C 0.494 3.506 17 O -0.585 6.585 18 C 0.092 3.908 19 N -0.471 5.471 20 C 0.188 3.812 21 N -0.328 5.328 22 N -0.338 5.338 23 C 0.363 3.637 24 O -0.442 6.442 25 C 0.126 3.874 26 C -0.088 4.088 27 H 0.246 0.754 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.019 0.981 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.165 0.835 37 H 0.180 0.820 38 H 0.266 0.734 39 H 0.429 0.571 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.056 0.944 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -22.031 3.844 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.369 5.369 10 C 0.004 3.996 11 C -0.083 4.083 12 C 0.041 3.959 13 C -0.153 4.153 14 C -0.014 4.014 15 N -0.327 5.327 16 C 0.282 3.718 17 O -0.465 6.465 18 C -0.033 4.033 19 N -0.174 5.174 20 C -0.100 4.100 21 N -0.168 5.168 22 N -0.188 5.188 23 C 0.056 3.944 24 O -0.245 6.245 25 C 0.003 3.997 26 C -0.127 4.127 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.282 0.718 39 H 0.291 0.709 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.652 -22.263 1.779 22.490 hybrid contribution 1.028 2.507 1.171 2.952 sum -1.624 -19.756 2.950 20.041 Atomic orbital electron populations 1.69998 1.06266 1.25285 1.58670 1.25527 0.96481 1.00575 1.03536 0.85187 0.77764 0.79726 0.77337 1.21653 1.22218 1.19438 1.19372 0.90671 0.83732 1.41911 0.90299 1.46350 1.03776 1.00640 1.86094 1.22804 0.95700 0.83383 0.97675 1.22103 0.96438 0.95198 0.94518 1.22201 0.86739 0.91066 0.95869 1.21833 0.99773 0.92254 1.01448 1.22164 1.03398 0.99348 0.76533 1.48138 1.56333 1.19938 1.08318 1.21297 0.78669 0.84820 0.87057 1.90792 1.59855 1.79335 1.16525 1.22225 1.04995 0.87819 0.88267 1.46639 1.10765 1.27746 1.32218 1.27223 0.88412 0.99907 0.94442 1.74105 1.13655 1.10529 1.18482 1.74478 0.98406 1.25370 1.20505 1.22167 0.86651 0.91157 0.94383 1.84943 1.13127 1.63807 1.62657 1.21404 0.96519 0.83907 0.97890 1.21336 1.00277 0.96700 0.94375 0.94513 0.92825 0.93584 0.95176 0.96278 0.88865 0.90522 0.84958 0.89307 0.81763 0.80273 0.71842 0.70900 0.91134 0.90641 0.92564 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.74 11.39 21.65 0.25 -56.49 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.23 -12.46 10.70 84.03 0.90 -11.56 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.64 -30.81 3.53 -722.65 -2.55 -33.36 16 10 C 0.13 4.39 7.72 86.33 0.67 5.05 16 11 C -0.08 -2.42 0.77 -52.03 -0.04 -2.46 16 12 C 0.17 7.23 6.64 86.32 0.57 7.80 16 13 C -0.11 -1.96 5.26 30.60 0.16 -1.80 16 14 C 0.11 1.04 6.22 86.42 0.54 1.58 16 15 N -0.59 -10.36 2.94 -818.54 -2.41 -12.77 16 16 C 0.49 9.16 7.76 87.66 0.68 9.84 16 17 O -0.59 -18.15 15.82 -3.01 -0.05 -18.19 16 18 C 0.09 0.63 5.03 85.63 0.43 1.06 16 19 N -0.47 -7.13 2.29 -647.64 -1.48 -8.61 16 20 C 0.19 3.09 12.80 179.81 2.30 5.39 16 21 N -0.33 -8.49 12.18 -59.40 -0.72 -9.22 16 22 N -0.34 -9.45 12.22 -173.67 -2.12 -11.57 16 23 C 0.36 7.64 9.22 179.70 1.66 9.30 16 24 O -0.44 -7.00 13.62 -88.40 -1.20 -8.20 16 25 C 0.13 3.16 6.30 86.42 0.54 3.70 16 26 C -0.09 -2.73 5.22 30.60 0.16 -2.57 16 27 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16 29 H 0.05 1.52 7.41 -2.38 -0.02 1.50 16 30 H 0.03 1.54 7.12 -2.39 -0.02 1.52 16 31 H 0.02 0.85 8.09 -2.39 -0.02 0.83 16 32 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.13 -0.08 5.89 -2.39 -0.01 -0.09 16 35 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 36 H 0.16 -0.13 7.90 -2.39 -0.02 -0.15 16 37 H 0.18 -0.38 7.72 -2.38 -0.02 -0.40 16 38 H 0.27 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.43 1.05 9.06 -74.05 -0.67 0.38 16 40 H 0.07 2.06 6.98 -2.39 -0.02 2.05 16 41 H 0.08 1.83 7.49 -2.39 -0.02 1.81 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.88 8.01 -2.39 -0.02 1.86 16 Total: -1.00 -91.98 354.42 1.15 -90.83 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: 0.38 Total: -1.84 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 9.04 Total: 21.95 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -9.04 Total: -132.02 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.25 Total: -26.40 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -91.98 1.15 -90.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035691506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.395 kcal (2) G-P(sol) polarization free energy of solvation -91.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds