Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99805 * 2 1 4 4 H 1.48495 * 109.47181 * 240.00598 * 3 2 1 5 5 H 1.48504 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47111 * 119.99975 * 3 2 1 7 7 C 1.38805 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99817 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.47060 * 136.05651 * 359.95405 * 9 7 2 11 11 C 1.53613 * 88.00556 * 207.10180 * 10 9 7 12 12 C 1.47069 * 136.05576 * 180.02562 * 9 7 2 13 13 H 1.08992 * 113.46506 * 267.68301 * 12 9 7 14 14 C 1.52998 * 113.46672 * 38.06804 * 12 9 7 15 15 N 1.46494 * 109.47254 * 284.58751 * 14 12 9 16 16 C 1.34780 * 119.99948 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99800 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00170 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.44225 * 59.92764 * 18 16 15 20 20 C 1.53113 * 109.44613 * 179.83171 * 18 16 15 21 21 C 1.53477 * 109.37987 * 189.80446 * 20 18 16 22 22 C 1.50802 * 108.08201 * 311.12368 * 21 20 18 23 23 N 1.29602 * 128.73535 * 195.96208 * 22 21 20 24 24 N 1.28876 * 109.79765 * 179.81111 * 23 22 21 25 25 C 1.31377 * 109.92590 * 0.26251 * 24 23 22 26 26 O 1.35535 * 126.57888 * 179.81145 * 25 24 23 27 27 N 1.35428 * 106.84633 * 359.69405 * 25 24 23 28 28 C 1.46206 * 129.14711 * 179.97438 * 27 25 24 29 29 H 0.96997 * 120.00408 * 359.97438 * 1 2 3 30 30 H 1.09000 * 113.46717 * 321.93954 * 10 9 7 31 31 H 1.09009 * 113.46725 * 92.37182 * 10 9 7 32 32 H 1.08997 * 114.24055 * 220.40864 * 11 10 9 33 33 H 1.09001 * 114.20057 * 87.55304 * 11 10 9 34 34 H 1.09003 * 109.46829 * 164.58452 * 14 12 9 35 35 H 1.09001 * 109.47057 * 44.58969 * 14 12 9 36 36 H 0.97000 * 120.00175 * 0.02562 * 15 14 12 37 37 H 1.09000 * 109.48627 * 309.77342 * 20 18 16 38 38 H 1.08999 * 109.48780 * 69.81151 * 20 18 16 39 39 H 1.08997 * 109.73766 * 70.76464 * 21 20 18 40 40 H 1.08997 * 109.73970 * 191.47328 * 21 20 18 41 41 H 0.96700 * 114.00323 * 269.85598 * 26 25 24 42 42 H 1.08998 * 109.59884 * 317.06046 * 28 27 25 43 43 H 1.09003 * 109.60359 * 77.38249 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.0876 -2.7949 0.0007 11 6 0.3426 -4.0938 0.6989 12 6 1.6801 -3.8154 -0.0005 13 1 1.7455 -4.2463 -0.9995 14 6 2.8993 -4.1404 0.8648 15 7 4.1172 -3.7095 0.1741 16 6 5.3209 -3.8961 0.7510 17 8 5.3957 -4.4204 1.8421 18 6 6.5739 -3.4534 0.0403 19 1 6.5296 -2.3790 -0.1379 20 6 7.7933 -3.7756 0.9084 21 6 9.0381 -3.1108 0.3050 22 6 9.0771 -3.4391 -1.1664 23 7 10.0678 -3.3321 -1.9951 24 7 9.6994 -3.7184 -3.1681 25 6 8.4392 -4.0890 -3.1421 26 8 7.7109 -4.5492 -4.1884 27 7 8.0082 -3.9254 -1.8687 28 6 6.6871 -4.1890 -1.3004 29 1 -0.4850 0.8400 0.0004 30 1 -0.7218 -2.1589 0.6182 31 1 -0.4944 -2.9541 -0.9980 32 1 -0.1718 -4.9857 0.3411 33 1 0.3839 -4.0244 1.7859 34 1 2.9429 -5.2150 1.0421 35 1 2.8179 -3.6179 1.8180 36 1 4.0574 -3.2899 -0.6984 37 1 7.6317 -3.3963 1.9175 38 1 7.9388 -4.8552 0.9447 39 1 8.9805 -2.0308 0.4398 40 1 9.9338 -3.4961 0.7921 41 1 7.2509 -3.8567 -4.6824 42 1 5.9171 -3.8277 -1.9820 43 1 6.5636 -5.2607 -1.1440 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038421025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = 63.595571 kcal Electronic energy + Delta-G solvation = -27429.652776 eV Core-core repulsion = 23513.787123 eV Total energy + Delta-G solvation = -3915.865653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.49435 -40.10939 -38.38777 -38.00346 -36.96427 -34.42295 -33.55165 -32.37158 -31.46115 -29.14492 -28.18598 -27.65773 -25.30457 -23.66002 -23.60044 -22.59635 -22.07483 -20.86947 -19.89256 -19.30981 -19.20788 -17.72579 -17.10287 -16.61293 -16.34323 -16.03057 -15.73329 -15.34950 -14.80730 -14.69090 -14.59405 -14.35387 -14.13537 -13.82316 -13.39231 -13.11924 -12.84267 -12.57798 -12.15571 -12.01023 -11.98037 -11.65967 -11.57443 -11.36865 -11.25531 -11.12608 -10.89069 -10.72101 -10.49738 -10.46846 -10.17635 -9.98287 -9.87317 -9.37787 -9.27146 -8.94771 -8.83209 -7.04537 -5.90532 -3.24097 1.30431 1.78200 2.45107 2.55136 3.13107 3.26417 3.31140 3.34047 3.43329 3.82079 4.01289 4.14730 4.26433 4.31531 4.63599 4.73240 4.82869 4.91370 5.04607 5.11750 5.21320 5.25980 5.34088 5.42682 5.51704 5.56035 5.63387 5.66667 5.75772 5.79465 5.92530 6.17055 6.20364 6.26303 6.45467 6.52752 6.65427 7.00326 7.08138 7.25203 7.43973 7.57092 7.83213 8.21316 8.38062 8.87925 9.56108 10.48527 11.26337 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.012872 B = 0.003573 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.769971 B = 7834.179190 C = 8428.981115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.120 3.880 15 N -0.710 5.710 16 C 0.520 3.480 17 O -0.537 6.537 18 C -0.125 4.125 19 H 0.113 0.887 20 C -0.106 4.106 21 C -0.034 4.034 22 C 0.194 3.806 23 N -0.276 5.276 24 N -0.289 5.289 25 C 0.353 3.647 26 O -0.436 6.436 27 N -0.481 5.481 28 C 0.117 3.883 29 H 0.255 0.745 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.408 0.592 42 H 0.102 0.898 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.569 -8.786 -2.033 13.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.004 4.004 15 N -0.359 5.359 16 C 0.303 3.697 17 O -0.414 6.414 18 C -0.147 4.147 19 H 0.131 0.869 20 C -0.145 4.145 21 C -0.073 4.073 22 C -0.073 4.073 23 N -0.118 5.118 24 N -0.139 5.139 25 C 0.048 3.952 26 O -0.236 6.236 27 N -0.184 5.184 28 C -0.006 4.006 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.266 0.734 42 H 0.120 0.880 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.075 -9.103 -1.771 15.225 hybrid contribution -1.354 1.318 -0.575 1.975 sum 10.721 -7.786 -2.346 13.456 Atomic orbital electron populations 1.69804 1.05000 1.25584 1.55797 1.24775 0.95629 0.97445 1.02259 0.86283 0.78620 0.83459 0.77858 1.21266 1.21405 1.21035 1.18730 0.89823 0.81357 1.44749 0.90426 1.45655 1.02633 0.98474 1.85958 1.22051 0.88671 0.90166 0.96534 1.23680 0.96812 0.99113 1.00426 1.22408 0.92023 0.87866 0.95798 0.93524 1.21888 0.82819 0.98534 0.97197 1.46037 1.05995 1.61133 1.22775 1.19942 0.84276 0.79299 0.86155 1.90712 1.86856 1.43391 1.20454 1.21731 0.95703 1.02957 0.94301 0.86883 1.21555 0.90565 1.02299 1.00055 1.20362 1.00393 1.02822 0.83769 1.24726 0.83927 1.00735 0.97925 1.74026 1.23510 1.18375 0.95884 1.74854 1.07189 1.16874 1.15029 1.21823 0.90102 1.02133 0.81115 1.84908 1.64702 1.35322 1.38625 1.46614 1.12784 1.49478 1.09502 1.21924 0.81481 1.02421 0.94767 0.93478 0.90939 0.95712 0.92269 0.90152 0.92039 0.90794 0.76331 0.88098 0.90280 0.87997 0.87380 0.73431 0.88016 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.66 11.51 55.49 0.64 -25.02 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 3 Si 0.91 20.80 29.55 -169.99 -5.02 15.77 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.22 -5.45 10.55 -15.06 -0.16 -5.61 16 8 H 0.08 1.81 7.68 -52.49 -0.40 1.41 16 9 N -0.60 -13.49 3.65 -176.81 -0.65 -14.13 16 10 C 0.15 3.24 7.40 -8.45 -0.06 3.17 16 11 C -0.16 -2.68 8.04 -26.17 -0.21 -2.89 16 12 C 0.13 2.17 4.10 -72.40 -0.30 1.88 16 13 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 14 C 0.12 1.87 5.52 -4.05 -0.02 1.85 16 15 N -0.71 -9.69 5.31 -60.30 -0.32 -10.01 16 16 C 0.52 6.80 7.14 -10.98 -0.08 6.73 16 17 O -0.54 -8.82 15.82 5.56 0.09 -8.73 16 18 C -0.13 -1.20 2.53 -91.54 -0.23 -1.43 16 19 H 0.11 1.04 8.12 -51.93 -0.42 0.61 16 20 C -0.11 -0.94 4.68 -26.43 -0.12 -1.06 16 21 C -0.03 -0.27 6.34 -27.59 -0.17 -0.45 16 22 C 0.19 2.20 7.78 -154.44 -1.20 1.00 16 23 N -0.28 -3.92 12.17 32.93 0.40 -3.52 16 24 N -0.29 -4.23 12.24 29.53 0.36 -3.87 16 25 C 0.35 4.23 9.30 -89.29 -0.83 3.40 16 26 O -0.44 -4.03 13.64 -18.30 -0.25 -4.27 16 27 N -0.48 -5.11 3.16 -115.37 -0.36 -5.47 16 28 C 0.12 1.01 6.16 -4.02 -0.02 0.99 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.07 1.76 7.12 -51.93 -0.37 1.39 16 31 H 0.03 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.40 5.11 8.12 -40.82 -0.33 4.78 16 37 H 0.10 0.92 7.78 -51.93 -0.40 0.52 16 38 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.41 1.69 9.06 45.56 0.41 2.11 16 42 H 0.10 0.72 7.87 -51.93 -0.41 0.31 16 43 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -34.13 358.82 -8.50 -42.63 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.28 Total: 3.84 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -3.51 Total: 7.38 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.07 Total: -62.03 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.16 Total: -13.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.13 -8.50 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038421025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.229 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds