Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48497 * 109.47310 * 240.00231 * 3 2 1 5 5 H 1.48500 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46871 * 120.00296 * 3 2 1 7 7 C 1.38808 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.47070 * 136.05452 * 359.95847 * 9 7 2 11 11 C 1.53498 * 87.98287 * 152.90680 * 10 9 7 12 12 C 1.47060 * 136.05675 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46848 * 92.25683 * 12 9 7 14 14 C 1.52996 * 113.47497 * 321.87213 * 12 9 7 15 15 N 1.46500 * 109.46934 * 74.50005 * 14 12 9 16 16 C 1.34780 * 119.99851 * 179.97438 * 15 14 12 17 17 O 1.21598 * 119.99762 * 0.02562 * 16 15 14 18 18 C 1.47528 * 119.99953 * 180.02562 * 16 15 14 19 19 C 1.36589 * 125.76787 * 180.02562 * 18 16 15 20 20 N 1.34813 * 106.83644 * 180.02562 * 19 18 16 21 21 C 1.46500 * 126.59756 * 180.02562 * 20 19 18 22 22 H 1.09001 * 110.81161 * 151.37123 * 21 20 19 23 23 C 1.54818 * 110.90733 * 274.99681 * 21 20 19 24 24 C 1.54097 * 104.18808 * 139.07338 * 23 21 20 25 25 O 1.43745 * 107.29442 * 2.03270 * 24 23 21 26 26 C 1.44382 * 106.97554 * 333.48168 * 25 24 23 27 27 N 1.40219 * 106.81319 * 0.26134 * 20 19 18 28 28 N 1.28758 * 108.35915 * 359.55399 * 27 20 19 29 29 H 0.97002 * 119.99716 * 359.97438 * 1 2 3 30 30 H 1.08990 * 113.46696 * 267.68872 * 10 9 7 31 31 H 1.08998 * 113.46782 * 38.07237 * 10 9 7 32 32 H 1.08996 * 114.21181 * 272.47732 * 11 10 9 33 33 H 1.09005 * 114.20545 * 139.65159 * 11 10 9 34 34 H 1.09001 * 109.46973 * 314.50620 * 14 12 9 35 35 H 1.08997 * 109.47578 * 194.50843 * 14 12 9 36 36 H 0.97002 * 120.00068 * 0.02562 * 15 14 12 37 37 H 1.07992 * 126.58553 * 359.97438 * 19 18 16 38 38 H 1.09004 * 110.48564 * 20.40048 * 23 21 20 39 39 H 1.08997 * 110.48807 * 257.75371 * 23 21 20 40 40 H 1.08998 * 109.88273 * 242.60534 * 24 23 21 41 41 H 1.08997 * 109.87725 * 121.45198 * 24 23 21 42 42 H 1.08999 * 110.61481 * 158.56165 * 26 25 24 43 43 H 1.08997 * 110.62085 * 281.56061 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.0878 -2.7948 0.0007 11 6 0.3411 -4.0919 -0.6992 12 6 1.6799 -3.8153 -0.0015 13 1 1.7471 -4.2466 0.9974 14 6 2.8975 -4.1404 -0.8690 15 7 4.1151 -3.6901 -0.1900 16 6 5.3175 -3.8733 -0.7707 17 8 5.3916 -4.4120 -1.8584 18 6 6.5436 -3.4204 -0.0868 19 6 7.8170 -3.5452 -0.5649 20 7 8.6363 -3.0082 0.3613 21 6 10.0963 -2.9139 0.2865 22 1 10.4581 -2.0527 0.8484 23 6 10.7607 -4.2193 0.7880 24 6 11.9187 -4.4575 -0.2004 25 8 11.9230 -3.3583 -1.1266 26 6 10.5718 -2.8531 -1.1875 27 7 7.8227 -2.5621 1.4126 28 7 6.5966 -2.8156 1.1123 29 1 -0.4850 0.8401 0.0004 30 1 -0.4927 -2.9542 0.9999 31 1 -0.7232 -2.1581 -0.6149 32 1 0.3809 -4.0213 -1.7861 33 1 -0.1735 -4.9839 -0.3417 34 1 2.8067 -3.6306 -1.8281 35 1 2.9498 -5.2167 -1.0331 36 1 4.0559 -3.2607 0.6778 37 1 8.1112 -3.9896 -1.5041 38 1 10.0517 -5.0465 0.7516 39 1 11.1437 -4.0880 1.8000 40 1 11.7617 -5.3934 -0.7366 41 1 12.8652 -4.4913 0.3390 42 1 10.5622 -1.8259 -1.5518 43 1 9.9516 -3.4907 -1.8175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038893275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = 84.457099 kcal Electronic energy + Delta-G solvation = -26772.784248 eV Core-core repulsion = 22857.823219 eV Total energy + Delta-G solvation = -3914.961029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.43810 -40.02824 -39.15448 -37.97818 -35.05666 -34.03506 -32.17363 -31.65998 -30.98729 -29.45766 -28.04941 -27.60165 -24.63605 -23.50083 -23.42535 -23.02724 -21.74677 -21.26741 -20.31249 -19.27856 -18.44274 -17.29818 -16.97886 -16.39820 -15.96102 -15.93361 -15.71594 -15.20827 -15.16089 -14.78045 -14.41149 -14.15683 -14.04379 -13.69791 -13.32696 -13.21984 -12.89281 -12.60740 -12.33592 -12.23795 -11.87977 -11.62055 -11.49463 -11.32707 -11.07102 -10.94456 -10.72857 -10.58100 -10.55397 -10.42130 -10.08225 -9.80840 -9.78364 -9.41397 -9.21302 -8.76534 -8.54866 -6.86045 -5.72534 -3.04893 0.94452 1.63136 1.73838 3.15198 3.38204 3.43729 3.47385 3.48624 3.50470 3.69477 3.76241 4.06030 4.13589 4.30916 4.38020 4.47932 4.66909 4.71401 4.90344 4.96750 5.06413 5.11019 5.15510 5.23168 5.29454 5.43491 5.58006 5.67351 5.79573 5.95136 5.96316 6.11034 6.16399 6.33836 6.42782 6.62484 6.73435 6.87415 7.26809 7.42425 7.61947 7.71941 7.98820 8.02185 8.47640 9.08015 9.74901 10.66651 11.44695 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003048 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.019393 B = 9183.242950 C =10304.268487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.212 4.212 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.121 3.879 15 N -0.694 5.694 16 C 0.598 3.402 17 O -0.551 6.551 18 C -0.088 4.088 19 C 0.085 3.915 20 N -0.358 5.358 21 C 0.118 3.882 22 H 0.132 0.868 23 C -0.167 4.167 24 C 0.047 3.953 25 O -0.363 6.363 26 C 0.040 3.960 27 N -0.060 5.060 28 N -0.195 5.195 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.203 0.797 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.779 -11.087 -0.125 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.339 4.339 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.019 3.981 13 H 0.067 0.933 14 C -0.003 4.003 15 N -0.343 5.343 16 C 0.381 3.619 17 O -0.429 6.429 18 C -0.227 4.227 19 C -0.071 4.071 20 N -0.144 5.144 21 C 0.015 3.985 22 H 0.150 0.850 23 C -0.206 4.206 24 C -0.030 4.030 25 O -0.280 6.280 26 C -0.038 4.038 27 N -0.040 5.040 28 N -0.069 5.069 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.248 0.752 37 H 0.220 0.780 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.019 -10.315 0.359 23.416 hybrid contribution 0.439 0.672 -0.158 0.819 sum 21.458 -9.643 0.201 23.526 Atomic orbital electron populations 1.69818 1.04954 1.25336 1.56598 1.24747 0.95609 0.97371 1.02576 0.86269 0.78541 0.83428 0.78005 1.21209 1.21576 1.21081 1.18841 0.90060 0.81333 1.43711 0.90151 1.45694 1.02607 0.98557 1.85804 1.22031 0.88721 0.90186 0.96509 1.23659 0.96824 0.99062 1.00382 1.22425 0.91914 0.87890 0.95909 0.93339 1.21897 0.82767 0.98343 0.97307 1.45801 1.05346 1.59495 1.23646 1.16740 0.81907 0.78924 0.84314 1.90773 1.86765 1.45021 1.20327 1.21622 0.94958 1.10773 0.95317 1.23242 0.89916 0.97384 0.96557 1.50347 1.07818 1.41304 1.14953 1.23185 0.74059 1.01377 0.99903 0.85033 1.23415 0.98597 0.96858 1.01744 1.23229 0.99065 0.90612 0.90115 1.88997 1.26205 1.48890 1.63917 1.23958 0.84531 1.02226 0.93114 1.82064 0.94153 1.20113 1.07661 1.74719 1.11831 1.08492 1.11823 0.93688 0.95749 0.90954 0.90162 0.92312 0.90765 0.91954 0.75226 0.78037 0.89304 0.88440 0.91263 0.88676 0.86846 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.45 11.51 55.49 0.64 -26.81 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.21 -5.85 10.55 -15.06 -0.16 -6.01 16 8 H 0.08 2.17 7.50 -52.48 -0.39 1.77 16 9 N -0.60 -14.93 3.65 -176.99 -0.65 -15.57 16 10 C 0.15 3.50 7.40 -8.50 -0.06 3.43 16 11 C -0.16 -2.92 8.03 -26.22 -0.21 -3.13 16 12 C 0.13 2.47 4.10 -72.40 -0.30 2.18 16 13 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 14 C 0.12 2.21 5.52 -4.04 -0.02 2.19 16 15 N -0.69 -12.61 5.33 -61.35 -0.33 -12.93 16 16 C 0.60 10.51 7.82 -12.47 -0.10 10.41 16 17 O -0.55 -10.53 16.86 5.28 0.09 -10.44 16 18 C -0.09 -1.34 6.99 -83.55 -0.58 -1.92 16 19 C 0.08 0.97 10.38 -16.84 -0.17 0.79 16 20 N -0.36 -3.77 3.62 -52.62 -0.19 -3.96 16 21 C 0.12 0.80 4.30 -65.92 -0.28 0.52 16 22 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.17 -0.86 6.76 -25.20 -0.17 -1.03 16 24 C 0.05 0.22 7.70 37.73 0.29 0.51 16 25 O -0.36 -2.56 11.52 -35.23 -0.41 -2.97 16 26 C 0.04 0.24 7.07 38.21 0.27 0.51 16 27 N -0.06 -0.86 13.79 60.35 0.83 -0.03 16 28 N -0.19 -3.18 12.04 32.85 0.40 -2.79 16 29 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.86 7.12 -51.93 -0.37 1.49 16 32 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.41 7.68 8.06 -40.82 -0.33 7.35 16 37 H 0.20 1.67 6.87 -52.49 -0.36 1.31 16 38 H 0.09 0.51 8.06 -51.93 -0.42 0.10 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.42 6.33 -51.93 -0.33 0.09 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -34.40 363.10 -6.75 -41.15 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.98 Total: 3.04 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -1.60 Total: 8.16 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.70 Total: -62.10 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.32 Total: -13.41 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.40 -6.75 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038893275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.607 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds