Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48497 * 109.47310 * 240.00231 * 3 2 1 5 5 H 1.48500 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46871 * 120.00296 * 3 2 1 7 7 C 1.38808 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.47070 * 136.05452 * 359.95847 * 9 7 2 11 11 C 1.53498 * 87.98287 * 152.90680 * 10 9 7 12 12 C 1.47060 * 136.05675 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46848 * 92.25683 * 12 9 7 14 14 C 1.52996 * 113.47497 * 321.87213 * 12 9 7 15 15 N 1.46500 * 109.46934 * 74.50005 * 14 12 9 16 16 C 1.34780 * 119.99851 * 179.97438 * 15 14 12 17 17 O 1.21598 * 119.99762 * 0.02562 * 16 15 14 18 18 C 1.47528 * 119.99953 * 180.02562 * 16 15 14 19 19 C 1.36589 * 125.76787 * 180.02562 * 18 16 15 20 20 N 1.34813 * 106.83644 * 180.02562 * 19 18 16 21 21 C 1.46500 * 126.59756 * 180.02562 * 20 19 18 22 22 H 1.09001 * 110.81161 * 151.37123 * 21 20 19 23 23 C 1.54818 * 110.90733 * 274.99681 * 21 20 19 24 24 C 1.54097 * 104.18808 * 139.07338 * 23 21 20 25 25 O 1.43745 * 107.29442 * 2.03270 * 24 23 21 26 26 C 1.44382 * 106.97554 * 333.48168 * 25 24 23 27 27 N 1.40219 * 106.81319 * 0.26134 * 20 19 18 28 28 N 1.28758 * 108.35915 * 359.55399 * 27 20 19 29 29 H 0.97002 * 119.99716 * 359.97438 * 1 2 3 30 30 H 1.08990 * 113.46696 * 267.68872 * 10 9 7 31 31 H 1.08998 * 113.46782 * 38.07237 * 10 9 7 32 32 H 1.08996 * 114.21181 * 272.47732 * 11 10 9 33 33 H 1.09005 * 114.20545 * 139.65159 * 11 10 9 34 34 H 1.09001 * 109.46973 * 314.50620 * 14 12 9 35 35 H 1.08997 * 109.47578 * 194.50843 * 14 12 9 36 36 H 0.97002 * 120.00068 * 0.02562 * 15 14 12 37 37 H 1.07992 * 126.58553 * 359.97438 * 19 18 16 38 38 H 1.09004 * 110.48564 * 20.40048 * 23 21 20 39 39 H 1.08997 * 110.48807 * 257.75371 * 23 21 20 40 40 H 1.08998 * 109.88273 * 242.60534 * 24 23 21 41 41 H 1.08997 * 109.87725 * 121.45198 * 24 23 21 42 42 H 1.08999 * 110.61481 * 158.56165 * 26 25 24 43 43 H 1.08997 * 110.62085 * 281.56061 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.0878 -2.7948 0.0007 11 6 0.3411 -4.0919 -0.6992 12 6 1.6799 -3.8153 -0.0015 13 1 1.7471 -4.2466 0.9974 14 6 2.8975 -4.1404 -0.8690 15 7 4.1151 -3.6901 -0.1900 16 6 5.3175 -3.8733 -0.7707 17 8 5.3916 -4.4120 -1.8584 18 6 6.5436 -3.4204 -0.0868 19 6 7.8170 -3.5452 -0.5649 20 7 8.6363 -3.0082 0.3613 21 6 10.0963 -2.9139 0.2865 22 1 10.4581 -2.0527 0.8484 23 6 10.7607 -4.2193 0.7880 24 6 11.9187 -4.4575 -0.2004 25 8 11.9230 -3.3583 -1.1266 26 6 10.5718 -2.8531 -1.1875 27 7 7.8227 -2.5621 1.4126 28 7 6.5966 -2.8156 1.1123 29 1 -0.4850 0.8401 0.0004 30 1 -0.4927 -2.9542 0.9999 31 1 -0.7232 -2.1581 -0.6149 32 1 0.3809 -4.0213 -1.7861 33 1 -0.1735 -4.9839 -0.3417 34 1 2.8067 -3.6306 -1.8281 35 1 2.9498 -5.2167 -1.0331 36 1 4.0559 -3.2607 0.6778 37 1 8.1112 -3.9896 -1.5041 38 1 10.0517 -5.0465 0.7516 39 1 11.1437 -4.0880 1.8000 40 1 11.7617 -5.3934 -0.7366 41 1 12.8652 -4.4913 0.3390 42 1 10.5622 -1.8259 -1.5518 43 1 9.9516 -3.4907 -1.8175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038893275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = 58.058822 kcal Electronic energy + Delta-G solvation = -26773.928963 eV Core-core repulsion = 22857.823219 eV Total energy + Delta-G solvation = -3916.105745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.43110 -40.76628 -40.39746 -39.59342 -35.90433 -35.44174 -34.23301 -32.40454 -31.94149 -30.06827 -29.91039 -29.10479 -25.52533 -25.37444 -24.63077 -23.65936 -23.11074 -22.07342 -21.53478 -20.95320 -19.55841 -18.50897 -17.79331 -17.67197 -17.16535 -17.12567 -16.83508 -16.31321 -16.13526 -16.00841 -15.72929 -15.60538 -15.17514 -14.80285 -14.65384 -14.51441 -13.89888 -13.60574 -13.43725 -13.31800 -13.13271 -12.95612 -12.70016 -12.68285 -12.58666 -12.36016 -12.32970 -12.02609 -11.85746 -11.63129 -11.40565 -11.39242 -10.93915 -10.86504 -10.81782 -10.49575 -9.98146 -8.87636 -7.87179 -5.18044 0.00441 0.54652 0.82679 1.41896 1.44069 1.49807 2.10377 2.23087 2.47151 2.69082 3.02304 3.22427 3.24551 3.34616 3.44517 3.57334 3.69220 3.82260 3.86552 3.95624 4.04599 4.12341 4.15314 4.37718 4.47467 4.52583 4.60616 4.67601 4.70709 4.73265 4.78534 4.89926 4.91830 5.08618 5.12138 5.27407 5.34757 5.41167 5.60911 5.64098 5.76899 5.99141 6.41654 6.81253 6.95749 7.10452 7.65092 8.64845 9.30280 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003048 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.019393 B = 9183.242950 C =10304.268487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.964 3.036 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.205 4.205 8 H 0.081 0.919 9 N -0.630 5.630 10 C 0.142 3.858 11 C -0.130 4.130 12 C 0.130 3.870 13 H 0.065 0.935 14 C 0.130 3.870 15 N -0.701 5.701 16 C 0.600 3.400 17 O -0.570 6.570 18 C -0.117 4.117 19 C 0.109 3.891 20 N -0.340 5.340 21 C 0.108 3.892 22 H 0.140 0.860 23 C -0.161 4.161 24 C 0.047 3.953 25 O -0.379 6.379 26 C 0.042 3.958 27 N -0.080 5.080 28 N -0.225 5.225 29 H 0.246 0.754 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.408 0.592 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.118 -12.674 -0.444 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.793 3.207 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.333 4.333 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.016 3.984 11 C -0.168 4.168 12 C 0.024 3.976 13 H 0.083 0.917 14 C 0.006 3.994 15 N -0.349 5.349 16 C 0.384 3.616 17 O -0.449 6.449 18 C -0.257 4.257 19 C -0.048 4.048 20 N -0.125 5.125 21 C 0.007 3.993 22 H 0.158 0.842 23 C -0.199 4.199 24 C -0.030 4.030 25 O -0.297 6.297 26 C -0.036 4.036 27 N -0.060 5.060 28 N -0.099 5.099 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.244 0.756 37 H 0.252 0.748 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 23.406 -11.931 0.060 26.271 hybrid contribution -0.154 1.071 -0.058 1.083 sum 23.251 -10.860 0.002 25.663 Atomic orbital electron populations 1.69989 1.06119 1.25252 1.58894 1.25459 0.96402 1.00286 1.03954 0.85364 0.77294 0.80080 0.77947 1.20924 1.21917 1.20704 1.19118 0.90349 0.82682 1.41190 0.90132 1.46023 1.03789 1.00015 1.85782 1.22067 0.87669 0.92302 0.96361 1.23464 0.95316 0.97952 1.00113 1.22588 0.93295 0.84758 0.96980 0.91720 1.21727 0.82497 0.99527 0.95682 1.45836 1.05704 1.59804 1.23531 1.16968 0.82291 0.78259 0.84038 1.90749 1.87139 1.45976 1.21066 1.21486 0.95388 1.12885 0.95898 1.23653 0.88612 0.95511 0.97032 1.50555 1.08963 1.39375 1.13608 1.23593 0.71712 1.02821 1.01194 0.84223 1.23403 0.98477 0.95534 1.02501 1.23360 0.99499 0.90322 0.89804 1.88990 1.26560 1.49649 1.64506 1.24013 0.84380 1.02913 0.92325 1.81973 0.94010 1.20948 1.09031 1.74689 1.12985 1.09517 1.12673 0.94520 0.96140 0.94436 0.89846 0.88033 0.93181 0.89295 0.75644 0.74804 0.89694 0.87404 0.90387 0.87222 0.86236 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.55 11.51 21.65 0.25 -58.30 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.96 47.64 29.55 68.60 2.03 49.67 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.20 -11.44 10.55 84.03 0.89 -10.55 16 8 H 0.08 4.39 7.50 -2.91 -0.02 4.36 16 9 N -0.63 -31.40 3.65 -713.89 -2.61 -34.01 16 10 C 0.14 6.58 7.40 83.18 0.62 7.19 16 11 C -0.13 -4.46 8.03 30.92 0.25 -4.21 16 12 C 0.13 4.89 4.10 41.79 0.17 5.07 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.13 4.58 5.52 86.38 0.48 5.05 16 15 N -0.70 -25.02 5.33 -466.27 -2.49 -27.50 16 16 C 0.60 20.59 7.82 86.69 0.68 21.27 16 17 O -0.57 -21.09 16.86 -4.02 -0.07 -21.16 16 18 C -0.12 -3.47 6.99 40.82 0.29 -3.18 16 19 C 0.11 2.26 10.38 83.85 0.87 3.13 16 20 N -0.34 -6.49 3.62 -320.38 -1.16 -7.65 16 21 C 0.11 1.21 4.30 46.30 0.20 1.41 16 22 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 23 C -0.16 -1.24 6.76 31.59 0.21 -1.02 16 24 C 0.05 0.31 7.70 72.35 0.56 0.86 16 25 O -0.38 -4.38 11.52 -148.98 -1.72 -6.10 16 26 C 0.04 0.39 7.07 72.67 0.51 0.90 16 27 N -0.08 -2.22 13.79 37.02 0.51 -1.71 16 28 N -0.23 -7.28 12.04 -50.00 -0.60 -7.89 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 1.99 7.12 -2.39 -0.02 1.97 16 32 H 0.08 2.84 8.12 -2.39 -0.02 2.82 16 33 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.41 15.19 8.06 -92.71 -0.75 14.44 16 37 H 0.24 3.12 6.87 -2.91 -0.02 3.10 16 38 H 0.08 0.76 8.06 -2.39 -0.02 0.75 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 0.65 6.33 -2.39 -0.02 0.64 16 Total: -1.00 -76.07 363.10 0.63 -75.44 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.30 Total: 16.78 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 6.18 Total: 22.42 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -6.10 Total: -137.06 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.78 Total: -27.25 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -76.07 0.63 -75.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038893275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.502 kcal (2) G-P(sol) polarization free energy of solvation -76.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds