Wall clock time and date at job start Fri Apr 10 2020 18:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47015 * 239.99802 * 3 2 1 5 5 H 1.48498 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46901 * 119.99590 * 3 2 1 7 7 C 1.38816 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99734 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05427 * 359.95137 * 9 7 2 11 11 C 1.53502 * 87.98344 * 152.91338 * 10 9 7 12 12 C 1.47065 * 136.06235 * 179.97438 * 9 7 2 13 13 H 1.08998 * 113.47038 * 92.24643 * 12 9 7 14 14 C 1.53006 * 113.46330 * 321.86970 * 12 9 7 15 15 N 1.46505 * 109.47137 * 74.50244 * 14 12 9 16 16 C 1.34775 * 119.99894 * 179.97438 * 15 14 12 17 17 O 1.21594 * 119.99730 * 359.97438 * 16 15 14 18 18 C 1.47522 * 119.99873 * 179.97438 * 16 15 14 19 19 C 1.36597 * 125.76688 * 179.71599 * 18 16 15 20 20 N 1.34817 * 106.83551 * 179.89740 * 19 18 16 21 21 C 1.46500 * 126.59372 * 180.13137 * 20 19 18 22 22 H 1.08999 * 110.43788 * 206.00151 * 21 20 19 23 23 C 1.54809 * 110.48948 * 83.44966 * 21 20 19 24 24 C 1.55223 * 101.98838 * 220.52049 * 23 21 20 25 25 O 1.44378 * 103.56920 * 36.88268 * 24 23 21 26 26 C 1.43745 * 106.97032 * 320.01092 * 25 24 23 27 27 N 1.40208 * 106.80983 * 0.36062 * 20 19 18 28 28 N 1.28756 * 108.36810 * 359.77131 * 27 20 19 29 29 H 0.97002 * 119.99782 * 0.02562 * 1 2 3 30 30 H 1.09005 * 113.47053 * 267.69043 * 10 9 7 31 31 H 1.09001 * 113.47193 * 38.07794 * 10 9 7 32 32 H 1.08997 * 114.20276 * 272.47743 * 11 10 9 33 33 H 1.09000 * 114.20698 * 139.65973 * 11 10 9 34 34 H 1.08997 * 109.46669 * 194.49955 * 14 12 9 35 35 H 1.08999 * 109.46940 * 314.50178 * 14 12 9 36 36 H 0.97000 * 119.99567 * 0.02562 * 15 14 12 37 37 H 1.07999 * 126.58203 * 0.04429 * 19 18 16 38 38 H 1.09002 * 110.90389 * 338.64266 * 23 21 20 39 39 H 1.09000 * 110.90210 * 102.24231 * 23 21 20 40 40 H 1.08998 * 110.51886 * 278.38373 * 24 23 21 41 41 H 1.09003 * 110.77814 * 155.50257 * 24 23 21 42 42 H 1.09002 * 109.88022 * 267.08739 * 26 25 24 43 43 H 1.09004 * 109.87800 * 145.93756 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.0877 -2.7948 0.0009 11 6 0.3416 -4.0923 -0.6980 12 6 1.6798 -3.8154 0.0005 13 1 1.7463 -4.2462 0.9996 14 6 2.8981 -4.1408 -0.8661 15 7 4.1152 -3.6902 -0.1864 16 6 5.3180 -3.8736 -0.7662 17 8 5.3929 -4.4134 -1.8532 18 6 6.5435 -3.4194 -0.0821 19 6 7.8178 -3.5497 -0.5567 20 7 8.6359 -3.0066 0.3671 21 6 10.0960 -2.9129 0.2935 22 1 10.5256 -2.8695 1.2943 23 6 10.5186 -1.6733 -0.5319 24 6 11.7104 -2.2269 -1.3580 25 8 11.3096 -3.5791 -1.6665 26 6 10.6743 -4.1072 -0.4902 27 7 7.8210 -2.5535 1.4142 28 7 6.5956 -2.8129 1.1161 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4935 -2.9538 1.0001 31 1 -0.7228 -2.1584 -0.6153 32 1 0.3822 -4.0220 -1.7849 33 1 -0.1733 -4.9840 -0.3405 34 1 2.9505 -5.2171 -1.0296 35 1 2.8079 -3.6314 -1.8255 36 1 4.0554 -3.2606 0.6812 37 1 8.1130 -3.9990 -1.4933 38 1 9.7100 -1.3477 -1.1864 39 1 10.8390 -0.8618 0.1215 40 1 12.6228 -2.2235 -0.7617 41 1 11.8487 -1.6495 -2.2721 42 1 11.4068 -4.6328 0.1224 43 1 9.8713 -4.7867 -0.7760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038893276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:15 Heat of formation + Delta-G solvation = 84.801625 kcal Electronic energy + Delta-G solvation = -26861.529876 eV Core-core repulsion = 22946.583786 eV Total energy + Delta-G solvation = -3914.946090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.41407 -39.98581 -39.12154 -37.95929 -34.98077 -34.00589 -32.16374 -31.66200 -30.92960 -29.43883 -28.03390 -27.57691 -24.50140 -23.46622 -23.41074 -23.15352 -21.76073 -21.16692 -20.30894 -19.26236 -18.36356 -17.14335 -16.85952 -16.51661 -16.09181 -15.96093 -15.71991 -15.26494 -15.08349 -14.72917 -14.34791 -14.15618 -13.73861 -13.64789 -13.27649 -13.15281 -12.88423 -12.63631 -12.29389 -12.09474 -11.87386 -11.75776 -11.48322 -11.31923 -11.05971 -10.93371 -10.72421 -10.71585 -10.54527 -10.25776 -10.05930 -9.79576 -9.76678 -9.37368 -9.19742 -8.75687 -8.52142 -6.85001 -5.71672 -3.03843 0.98770 1.70146 1.77280 3.11275 3.42128 3.44528 3.47481 3.48881 3.54823 3.67347 3.87550 4.10716 4.15811 4.31419 4.47388 4.48720 4.65149 4.80426 4.91495 4.94891 5.05328 5.09133 5.22694 5.25598 5.31025 5.44641 5.59580 5.70318 5.82287 5.96722 6.06918 6.13130 6.16267 6.35522 6.44204 6.63833 6.75289 6.89847 7.27901 7.43659 7.62969 7.75276 8.02077 8.03120 8.51026 9.08995 9.75776 10.67739 11.45573 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003209 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.833948 B = 8722.889518 C = 9953.756169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.212 4.212 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.127 3.873 13 H 0.049 0.951 14 C 0.121 3.879 15 N -0.695 5.695 16 C 0.598 3.402 17 O -0.550 6.550 18 C -0.089 4.089 19 C 0.089 3.911 20 N -0.361 5.361 21 C 0.118 3.882 22 H 0.130 0.870 23 C -0.167 4.167 24 C 0.048 3.952 25 O -0.366 6.366 26 C 0.036 3.964 27 N -0.063 5.063 28 N -0.195 5.195 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.204 0.796 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.762 -8.761 -0.214 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.339 4.339 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.019 3.981 13 H 0.067 0.933 14 C -0.003 4.003 15 N -0.343 5.343 16 C 0.381 3.619 17 O -0.428 6.428 18 C -0.228 4.228 19 C -0.067 4.067 20 N -0.147 5.147 21 C 0.015 3.985 22 H 0.147 0.853 23 C -0.206 4.206 24 C -0.029 4.029 25 O -0.284 6.284 26 C -0.042 4.042 27 N -0.043 5.043 28 N -0.069 5.069 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.247 0.753 37 H 0.220 0.780 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.836 -8.177 0.190 23.318 hybrid contribution 0.601 0.952 -0.084 1.129 sum 22.437 -7.225 0.106 23.572 Atomic orbital electron populations 1.69816 1.04938 1.25308 1.56637 1.24743 0.95602 0.97340 1.02613 0.86274 0.78541 0.83476 0.77976 1.21244 1.21572 1.21107 1.18844 0.90066 0.81343 1.43646 0.90155 1.45691 1.02605 0.98563 1.85791 1.22033 0.88717 0.90183 0.96506 1.23655 0.96833 0.99055 1.00381 1.22424 0.91923 0.87868 0.95916 0.93334 1.21894 0.82784 0.98346 0.97284 1.45795 1.05336 1.59560 1.23656 1.16738 0.81903 0.78923 0.84314 1.90775 1.86748 1.44918 1.20358 1.21614 0.94937 1.10906 0.95389 1.23262 0.89810 0.97149 0.96505 1.50503 1.07906 1.41148 1.15114 1.23029 0.74681 0.97351 1.03462 0.85262 1.23702 1.00125 0.97227 0.99513 1.23673 0.95916 0.82739 1.00556 1.88991 1.77528 1.27972 1.33954 1.23626 0.98353 0.94615 0.87636 1.82029 0.94210 1.20149 1.07916 1.74706 1.11903 1.08494 1.11790 0.93703 0.95761 0.90963 0.90164 0.92311 0.91954 0.90789 0.75255 0.77961 0.89013 0.88111 0.91093 0.87728 0.89566 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 11.51 55.49 0.64 -26.88 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.21 -5.87 10.55 -15.06 -0.16 -6.03 16 8 H 0.08 2.18 7.50 -52.49 -0.39 1.79 16 9 N -0.60 -15.01 3.65 -177.03 -0.65 -15.66 16 10 C 0.15 3.52 7.40 -8.51 -0.06 3.45 16 11 C -0.16 -2.95 8.03 -26.23 -0.21 -3.16 16 12 C 0.13 2.50 4.10 -72.42 -0.30 2.20 16 13 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 14 C 0.12 2.25 5.52 -4.04 -0.02 2.23 16 15 N -0.69 -12.84 5.33 -61.35 -0.33 -13.17 16 16 C 0.60 10.78 7.82 -12.48 -0.10 10.68 16 17 O -0.55 -10.82 16.86 5.28 0.09 -10.73 16 18 C -0.09 -1.41 6.99 -83.55 -0.58 -2.00 16 19 C 0.09 1.07 9.99 -16.83 -0.17 0.91 16 20 N -0.36 -3.93 3.59 -53.08 -0.19 -4.12 16 21 C 0.12 0.78 4.19 -66.40 -0.28 0.51 16 22 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 23 C -0.17 -0.98 6.90 -24.60 -0.17 -1.15 16 24 C 0.05 0.23 7.72 38.33 0.30 0.53 16 25 O -0.37 -2.72 11.52 -35.23 -0.41 -3.12 16 26 C 0.04 0.21 7.21 37.73 0.27 0.48 16 27 N -0.06 -0.92 13.78 60.35 0.83 -0.09 16 28 N -0.20 -3.25 12.04 32.84 0.40 -2.85 16 29 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 32 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.41 7.79 8.06 -40.82 -0.33 7.46 16 37 H 0.20 1.96 7.42 -52.49 -0.39 1.57 16 38 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.62 6.33 -51.93 -0.33 0.29 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -34.78 363.42 -6.75 -41.53 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.01 Total: 3.47 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -1.58 Total: 8.38 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.70 Total: -62.77 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.32 Total: -13.86 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.78 -6.75 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038893276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.334 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds