Wall clock time and date at job start Fri Apr 10 2020 18:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00181 * 2 1 4 4 H 1.48500 * 109.47015 * 239.99802 * 3 2 1 5 5 H 1.48498 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46901 * 119.99590 * 3 2 1 7 7 C 1.38816 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99734 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05427 * 359.95137 * 9 7 2 11 11 C 1.53502 * 87.98344 * 152.91338 * 10 9 7 12 12 C 1.47065 * 136.06235 * 179.97438 * 9 7 2 13 13 H 1.08998 * 113.47038 * 92.24643 * 12 9 7 14 14 C 1.53006 * 113.46330 * 321.86970 * 12 9 7 15 15 N 1.46505 * 109.47137 * 74.50244 * 14 12 9 16 16 C 1.34775 * 119.99894 * 179.97438 * 15 14 12 17 17 O 1.21594 * 119.99730 * 359.97438 * 16 15 14 18 18 C 1.47522 * 119.99873 * 179.97438 * 16 15 14 19 19 C 1.36597 * 125.76688 * 179.71599 * 18 16 15 20 20 N 1.34817 * 106.83551 * 179.89740 * 19 18 16 21 21 C 1.46500 * 126.59372 * 180.13137 * 20 19 18 22 22 H 1.08999 * 110.43788 * 206.00151 * 21 20 19 23 23 C 1.54809 * 110.48948 * 83.44966 * 21 20 19 24 24 C 1.55223 * 101.98838 * 220.52049 * 23 21 20 25 25 O 1.44378 * 103.56920 * 36.88268 * 24 23 21 26 26 C 1.43745 * 106.97032 * 320.01092 * 25 24 23 27 27 N 1.40208 * 106.80983 * 0.36062 * 20 19 18 28 28 N 1.28756 * 108.36810 * 359.77131 * 27 20 19 29 29 H 0.97002 * 119.99782 * 0.02562 * 1 2 3 30 30 H 1.09005 * 113.47053 * 267.69043 * 10 9 7 31 31 H 1.09001 * 113.47193 * 38.07794 * 10 9 7 32 32 H 1.08997 * 114.20276 * 272.47743 * 11 10 9 33 33 H 1.09000 * 114.20698 * 139.65973 * 11 10 9 34 34 H 1.08997 * 109.46669 * 194.49955 * 14 12 9 35 35 H 1.08999 * 109.46940 * 314.50178 * 14 12 9 36 36 H 0.97000 * 119.99567 * 0.02562 * 15 14 12 37 37 H 1.07999 * 126.58203 * 0.04429 * 19 18 16 38 38 H 1.09002 * 110.90389 * 338.64266 * 23 21 20 39 39 H 1.09000 * 110.90210 * 102.24231 * 23 21 20 40 40 H 1.08998 * 110.51886 * 278.38373 * 24 23 21 41 41 H 1.09003 * 110.77814 * 155.50257 * 24 23 21 42 42 H 1.09002 * 109.88022 * 267.08739 * 26 25 24 43 43 H 1.09004 * 109.87800 * 145.93756 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.0877 -2.7948 0.0009 11 6 0.3416 -4.0923 -0.6980 12 6 1.6798 -3.8154 0.0005 13 1 1.7463 -4.2462 0.9996 14 6 2.8981 -4.1408 -0.8661 15 7 4.1152 -3.6902 -0.1864 16 6 5.3180 -3.8736 -0.7662 17 8 5.3929 -4.4134 -1.8532 18 6 6.5435 -3.4194 -0.0821 19 6 7.8178 -3.5497 -0.5567 20 7 8.6359 -3.0066 0.3671 21 6 10.0960 -2.9129 0.2935 22 1 10.5256 -2.8695 1.2943 23 6 10.5186 -1.6733 -0.5319 24 6 11.7104 -2.2269 -1.3580 25 8 11.3096 -3.5791 -1.6665 26 6 10.6743 -4.1072 -0.4902 27 7 7.8210 -2.5535 1.4142 28 7 6.5956 -2.8129 1.1161 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4935 -2.9538 1.0001 31 1 -0.7228 -2.1584 -0.6153 32 1 0.3822 -4.0220 -1.7849 33 1 -0.1733 -4.9840 -0.3405 34 1 2.9505 -5.2171 -1.0296 35 1 2.8079 -3.6314 -1.8255 36 1 4.0554 -3.2606 0.6812 37 1 8.1130 -3.9990 -1.4933 38 1 9.7100 -1.3477 -1.1864 39 1 10.8390 -0.8618 0.1215 40 1 12.6228 -2.2235 -0.7617 41 1 11.8487 -1.6495 -2.2721 42 1 11.4068 -4.6328 0.1224 43 1 9.8713 -4.7867 -0.7760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038893276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:15 Heat of formation + Delta-G solvation = 57.948027 kcal Electronic energy + Delta-G solvation = -26862.694335 eV Core-core repulsion = 22946.583786 eV Total energy + Delta-G solvation = -3916.110549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.43867 -40.76938 -40.36743 -39.59790 -35.85796 -35.43437 -34.23649 -32.43742 -31.92937 -30.05261 -29.90708 -29.10468 -25.43502 -25.37211 -24.63395 -23.67877 -23.22958 -22.00881 -21.55920 -20.96055 -19.53017 -18.48976 -17.74909 -17.36743 -17.25344 -17.11858 -16.99002 -16.63288 -16.09265 -15.90506 -15.70758 -15.64753 -15.32041 -14.80432 -14.57116 -14.15226 -13.83200 -13.63370 -13.49847 -13.31124 -13.05512 -12.96271 -12.70548 -12.61354 -12.58632 -12.35179 -12.30150 -12.24375 -11.86203 -11.63530 -11.50437 -11.40059 -10.94374 -10.82186 -10.77650 -10.49801 -9.98898 -8.87832 -7.87423 -5.18212 -0.00215 0.54090 0.87303 1.41035 1.43225 1.49116 2.09438 2.22561 2.46678 2.68892 3.05145 3.17905 3.32137 3.34869 3.45384 3.60269 3.67817 3.82721 3.86461 3.95462 4.09244 4.14346 4.20368 4.37255 4.42071 4.52405 4.62386 4.67264 4.71991 4.74593 4.76610 4.85587 4.91336 5.08392 5.11603 5.33111 5.34366 5.40538 5.60587 5.67252 5.76637 5.98862 6.40855 6.80957 6.95553 7.09774 7.64703 8.64611 9.29975 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003209 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.833948 B = 8722.889518 C = 9953.756169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.206 4.206 8 H 0.080 0.920 9 N -0.630 5.630 10 C 0.142 3.858 11 C -0.130 4.130 12 C 0.130 3.870 13 H 0.066 0.934 14 C 0.130 3.870 15 N -0.700 5.700 16 C 0.599 3.401 17 O -0.571 6.571 18 C -0.117 4.117 19 C 0.109 3.891 20 N -0.342 5.342 21 C 0.108 3.892 22 H 0.153 0.847 23 C -0.165 4.165 24 C 0.050 3.950 25 O -0.389 6.389 26 C 0.038 3.962 27 N -0.078 5.078 28 N -0.225 5.225 29 H 0.246 0.754 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.409 0.591 37 H 0.228 0.772 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.399 -10.035 -0.132 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.793 3.207 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.334 4.334 8 H 0.098 0.902 9 N -0.356 5.356 10 C 0.016 3.984 11 C -0.169 4.169 12 C 0.024 3.976 13 H 0.083 0.917 14 C 0.005 3.995 15 N -0.348 5.348 16 C 0.384 3.616 17 O -0.450 6.450 18 C -0.257 4.257 19 C -0.049 4.049 20 N -0.127 5.127 21 C 0.007 3.993 22 H 0.171 0.829 23 C -0.203 4.203 24 C -0.026 4.026 25 O -0.308 6.308 26 C -0.039 4.039 27 N -0.058 5.058 28 N -0.099 5.099 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.244 0.756 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.518 -9.475 0.290 26.287 hybrid contribution -0.081 1.279 -0.120 1.288 sum 24.437 -8.196 0.170 25.775 Atomic orbital electron populations 1.69986 1.06087 1.25247 1.58849 1.25454 0.96404 1.00247 1.03933 0.85369 0.77306 0.80136 0.77894 1.21061 1.21812 1.20684 1.19112 0.90325 0.82712 1.41252 0.90217 1.46015 1.03794 0.99992 1.85784 1.22067 0.87643 0.92265 0.96375 1.23462 0.95301 0.97990 1.00097 1.22590 0.93246 0.84785 0.96989 0.91661 1.21735 0.82533 0.99513 0.95677 1.45825 1.05648 1.59795 1.23535 1.16974 0.82335 0.78265 0.84028 1.90749 1.87145 1.45961 1.21187 1.21459 0.95265 1.12939 0.96008 1.23540 0.88742 0.95685 0.96898 1.50787 1.09255 1.39083 1.13603 1.23567 0.72004 0.98484 1.05254 0.82928 1.23709 0.99931 0.97306 0.99404 1.23819 0.96136 0.81605 1.01069 1.88970 1.77786 1.29123 1.34928 1.23712 0.98825 0.93965 0.87443 1.81920 0.94028 1.20698 1.09132 1.74677 1.13117 1.09548 1.12522 0.94509 0.96095 0.94427 0.89887 0.88000 0.89317 0.93256 0.75617 0.75599 0.91185 0.86576 0.88678 0.87215 0.86965 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.64 11.51 21.65 0.25 -58.39 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.96 47.85 29.55 68.60 2.03 49.87 16 4 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.21 -11.56 10.55 84.03 0.89 -10.67 16 8 H 0.08 4.39 7.50 -2.91 -0.02 4.36 16 9 N -0.63 -31.63 3.65 -713.99 -2.61 -34.24 16 10 C 0.14 6.64 7.40 83.18 0.62 7.26 16 11 C -0.13 -4.51 8.03 30.92 0.25 -4.26 16 12 C 0.13 4.96 4.10 41.78 0.17 5.14 16 13 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 14 C 0.13 4.67 5.52 86.38 0.48 5.15 16 15 N -0.70 -25.64 5.33 -466.26 -2.49 -28.12 16 16 C 0.60 21.41 7.82 86.69 0.68 22.09 16 17 O -0.57 -22.13 16.86 -4.01 -0.07 -22.20 16 18 C -0.12 -3.64 6.99 40.82 0.29 -3.36 16 19 C 0.11 2.49 9.99 83.85 0.84 3.33 16 20 N -0.34 -6.85 3.59 -321.85 -1.16 -8.01 16 21 C 0.11 1.14 4.19 45.98 0.19 1.34 16 22 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 23 C -0.16 -1.54 6.90 31.97 0.22 -1.32 16 24 C 0.05 0.34 7.72 72.74 0.56 0.91 16 25 O -0.39 -4.78 11.52 -148.98 -1.72 -6.50 16 26 C 0.04 0.34 7.21 72.36 0.52 0.86 16 27 N -0.08 -2.19 13.78 37.02 0.51 -1.68 16 28 N -0.23 -7.46 12.04 -50.00 -0.60 -8.06 16 29 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.04 2.00 7.12 -2.39 -0.02 1.98 16 32 H 0.08 2.86 8.12 -2.39 -0.02 2.84 16 33 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.41 15.50 8.06 -92.71 -0.75 14.75 16 37 H 0.23 3.95 7.42 -2.91 -0.02 3.93 16 38 H 0.07 0.99 8.06 -2.39 -0.02 0.97 16 39 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.09 0.93 6.33 -2.39 -0.02 0.92 16 Total: -1.00 -77.26 363.42 0.61 -76.65 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.29 Total: 17.71 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 6.16 Total: 22.96 kcal Atomic # 7 Polarization: -132.41 SS G_CDS: -6.09 Total: -138.50 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -1.78 Total: -28.69 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.87 kcal Total: -77.26 0.61 -76.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038893276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.595 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds