Wall clock time and date at job start Fri Apr 10 2020 18:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00373 * 2 1 4 4 H 1.48501 * 109.47032 * 270.00291 * 3 2 1 5 5 H 1.48504 * 109.46565 * 29.99806 * 3 2 1 6 6 H 1.48495 * 109.47103 * 149.99729 * 3 2 1 7 7 C 1.38812 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99906 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00426 * 359.97438 * 7 2 1 10 10 C 1.47580 * 125.67569 * 0.02562 * 9 7 2 11 11 C 1.55212 * 105.02496 * 203.83255 * 10 9 7 12 12 C 1.53493 * 101.39237 * 324.66524 * 11 10 9 13 13 C 1.53477 * 111.81961 * 271.72175 * 12 11 10 14 14 C 1.54627 * 102.74403 * 205.63553 * 13 12 11 15 15 N 1.47160 * 107.34315 * 20.65867 * 14 13 12 16 16 C 1.34769 * 125.59681 * 180.91569 * 15 14 13 17 17 O 1.21285 * 119.99855 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.00238 * 0.03052 * 16 15 14 19 19 N 1.46510 * 109.47092 * 179.97438 * 18 16 15 20 20 C 1.36599 * 127.11670 * 264.95780 * 19 18 16 21 21 N 1.30337 * 107.27496 * 180.02562 * 20 19 18 22 22 N 1.28527 * 109.99796 * 0.02562 * 21 20 19 23 23 C 1.31034 * 109.85968 * 359.97438 * 22 21 20 24 24 O 1.35539 * 126.44784 * 179.74211 * 23 22 21 25 25 C 1.47756 * 108.79728 * 1.18262 * 15 14 13 26 26 C 1.47453 * 125.67928 * 179.97438 * 9 7 2 27 27 H 0.96996 * 119.99481 * 0.02562 * 1 2 3 28 28 H 1.09009 * 110.32564 * 322.71526 * 10 9 7 29 29 H 1.09002 * 110.33416 * 84.83460 * 10 9 7 30 30 H 1.09005 * 111.03847 * 206.63783 * 11 10 9 31 31 H 1.08993 * 111.04290 * 82.69660 * 11 10 9 32 32 H 1.09000 * 110.75289 * 87.32346 * 13 12 11 33 33 H 1.08997 * 110.91684 * 324.02434 * 13 12 11 34 34 H 1.09005 * 109.87159 * 261.22380 * 14 13 12 35 35 H 1.08996 * 109.86971 * 140.10114 * 14 13 12 36 36 H 1.09004 * 109.47559 * 60.00200 * 18 16 15 37 37 H 1.08995 * 109.47169 * 299.99320 * 18 16 15 38 38 H 1.07996 * 126.36603 * 0.05135 * 20 19 18 39 39 H 0.96700 * 114.00301 * 90.02665 * 24 23 22 40 40 H 1.09000 * 110.39615 * 96.19052 * 25 15 14 41 41 H 1.09002 * 110.39224 * 218.58539 * 25 15 14 42 42 H 1.09004 * 109.99049 * 58.44537 * 26 9 7 43 43 H 1.08994 * 110.02825 * 297.13093 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1430 -2.5341 -0.0005 11 6 -0.4078 -3.9384 0.6052 12 6 0.7838 -4.7350 0.0560 13 6 0.4763 -5.3475 -1.3172 14 6 1.4280 -6.5651 -1.3685 15 7 1.7997 -6.8900 0.0179 16 6 2.6316 -7.8808 0.3953 17 8 2.8677 -8.0593 1.5715 18 6 3.2687 -8.7667 -0.6440 19 7 4.1231 -9.7572 0.0159 20 6 5.4684 -9.6692 0.2363 21 7 5.8323 -10.7603 0.8493 22 7 4.8144 -11.5244 1.0283 23 6 3.7404 -10.9575 0.5363 24 8 2.4859 -11.4708 0.5389 25 6 1.1058 -5.9557 0.9283 26 6 1.9328 -3.7318 -0.0016 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6003 -1.7622 0.6187 29 1 -0.5290 -2.4800 -1.0185 30 1 -1.3517 -4.3481 0.2454 31 1 -0.3876 -3.9049 1.6944 32 1 0.7080 -4.6422 -2.1153 33 1 -0.5640 -5.6675 -1.3764 34 1 2.3203 -6.3141 -1.9421 35 1 0.9189 -7.4142 -1.8243 36 1 3.8718 -8.1594 -1.3190 37 1 2.4912 -9.2779 -1.2117 38 1 6.1109 -8.8480 -0.0449 39 1 1.9665 -11.2361 1.3200 40 1 0.1894 -6.4065 1.3090 41 1 1.7608 -5.6712 1.7518 42 1 2.5755 -3.8509 0.8707 43 1 2.5114 -3.8792 -0.9135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041219506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:22 Heat of formation + Delta-G solvation = 56.063044 kcal Electronic energy + Delta-G solvation = -27375.753183 eV Core-core repulsion = 23459.560895 eV Total energy + Delta-G solvation = -3916.192288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.30108 -40.61021 -38.79188 -37.92340 -35.94610 -35.12024 -32.94502 -30.81373 -30.11118 -29.69281 -29.20114 -27.99596 -25.73653 -24.01642 -22.93935 -22.77768 -22.53480 -20.53559 -20.06741 -19.21506 -18.72394 -17.92505 -17.16630 -16.80345 -16.48807 -16.30118 -15.60246 -15.27766 -14.95541 -14.76666 -14.53022 -14.38575 -13.96747 -13.37327 -13.20623 -12.93372 -12.72167 -12.71339 -12.41552 -12.04443 -11.93158 -11.67287 -11.55934 -11.37963 -11.15568 -11.00810 -10.87920 -10.54417 -10.38813 -10.22858 -10.10557 -10.04306 -9.89614 -9.63516 -9.45569 -8.94160 -8.73870 -6.94823 -5.75468 -3.17176 1.18299 1.79048 2.10347 2.47125 2.65361 3.33338 3.39080 3.40733 3.46295 3.89656 4.04047 4.28986 4.37237 4.42919 4.46916 4.63447 4.80519 4.93445 5.05894 5.17322 5.27070 5.30850 5.40588 5.54623 5.60265 5.63905 5.71105 5.77219 5.82686 6.02955 6.07046 6.14984 6.19215 6.39676 6.45721 6.58283 6.67058 6.96661 7.14212 7.37900 7.52016 7.66563 7.74620 8.25034 8.37492 9.11792 9.72234 10.36302 11.28658 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.002696 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.461540 B =10382.083073 C =11022.375844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.154 3.846 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.113 4.113 14 C 0.094 3.906 15 N -0.607 5.607 16 C 0.510 3.490 17 O -0.531 6.531 18 C 0.092 3.908 19 N -0.473 5.473 20 C 0.178 3.822 21 N -0.282 5.282 22 N -0.285 5.285 23 C 0.362 3.638 24 O -0.440 6.440 25 C 0.124 3.876 26 C 0.154 3.846 27 H 0.253 0.747 28 H 0.106 0.894 29 H 0.014 0.986 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.226 0.774 39 H 0.410 0.590 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.024 0.976 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 -16.559 -4.744 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.083 4.083 13 C -0.150 4.150 14 C -0.028 4.028 15 N -0.341 5.341 16 C 0.296 3.704 17 O -0.408 6.408 18 C -0.036 4.036 19 N -0.176 5.176 20 C -0.109 4.109 21 N -0.122 5.122 22 N -0.136 5.136 23 C 0.057 3.943 24 O -0.240 6.240 25 C 0.002 3.998 26 C 0.028 3.972 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.242 0.758 39 H 0.268 0.732 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.042 0.958 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.651 -17.812 -3.944 18.318 hybrid contribution -0.731 2.166 -0.419 2.324 sum 0.920 -15.646 -4.363 16.269 Atomic orbital electron populations 1.69787 1.04896 1.24894 1.57481 1.24780 0.95735 0.97737 1.02264 0.86078 0.78595 0.83271 0.77590 1.21596 1.21588 1.20665 1.19060 0.90488 0.82409 1.43312 0.90548 1.44637 1.01852 0.99552 1.86959 1.21977 0.84608 0.92161 0.98288 1.22821 0.94825 0.98912 1.00431 1.21634 0.98789 0.93752 0.94172 1.22467 0.98812 0.95405 0.98353 1.22321 0.99494 0.98689 0.82326 1.48632 1.44835 1.31363 1.09278 1.20150 0.79486 0.81023 0.89733 1.90801 1.61431 1.70387 1.18169 1.21730 0.96339 0.90834 0.94661 1.46448 1.09735 1.15480 1.45942 1.26409 0.81876 1.01241 1.01416 1.74228 1.21020 1.01421 1.15553 1.74617 0.95049 1.24432 1.19473 1.22104 0.88938 0.83941 0.99327 1.84831 1.19385 1.71603 1.48162 1.22262 0.96455 0.88005 0.93068 1.21006 0.92662 0.85544 0.97938 0.93660 0.87651 0.96821 0.91830 0.91726 0.89082 0.90376 0.90900 0.91141 0.85015 0.85461 0.75759 0.73236 0.91029 0.90003 0.95822 0.96058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.71 10.10 55.49 0.56 -25.15 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.22 -5.97 10.28 -15.06 -0.15 -6.12 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.33 3.41 -170.43 -0.58 -14.91 16 10 C 0.15 3.40 5.85 -2.28 -0.01 3.39 16 11 C -0.13 -2.13 6.06 -25.30 -0.15 -2.28 16 12 C -0.08 -1.18 0.61 -153.96 -0.09 -1.27 16 13 C -0.11 -1.24 5.79 -25.63 -0.15 -1.39 16 14 C 0.09 0.76 6.47 -2.83 -0.02 0.75 16 15 N -0.61 -6.36 3.34 -170.86 -0.57 -6.93 16 16 C 0.51 5.48 7.92 -10.99 -0.09 5.40 16 17 O -0.53 -8.01 16.71 5.55 0.09 -7.91 16 18 C 0.09 0.63 5.88 -5.19 -0.03 0.60 16 19 N -0.47 -4.67 2.29 -121.03 -0.28 -4.94 16 20 C 0.18 1.79 12.80 -89.07 -1.14 0.65 16 21 N -0.28 -3.86 12.18 29.87 0.36 -3.50 16 22 N -0.29 -4.15 12.22 29.65 0.36 -3.79 16 23 C 0.36 4.30 9.22 -88.76 -0.82 3.48 16 24 O -0.44 -4.13 13.62 -18.31 -0.25 -4.38 16 25 C 0.12 1.58 5.92 -3.12 -0.02 1.56 16 26 C 0.15 2.88 6.45 -3.70 -0.02 2.86 16 27 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.11 2.69 5.89 -51.92 -0.31 2.39 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.88 7.77 -51.93 -0.40 0.48 16 31 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 32 H 0.09 1.12 7.94 -51.93 -0.41 0.71 16 33 H 0.08 0.76 7.81 -51.93 -0.41 0.35 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.23 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.41 2.35 9.06 45.56 0.41 2.76 16 40 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 41 H 0.08 1.21 7.62 -51.93 -0.40 0.82 16 42 H 0.02 0.47 7.61 -51.93 -0.39 0.07 16 43 H 0.02 0.39 7.78 -51.93 -0.40 -0.01 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -35.54 356.00 -7.98 -43.53 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.23 Total: -0.94 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.80 Total: 7.27 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.14 Total: -59.22 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.16 Total: -12.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.54 -7.98 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041219506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.589 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds