Wall clock time and date at job start Fri Apr 10 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99724 * 2 1 4 4 H 1.48498 * 109.47263 * 274.98802 * 3 2 1 5 5 H 1.48505 * 109.47226 * 34.99101 * 3 2 1 6 6 H 1.48502 * 109.46872 * 154.98890 * 3 2 1 7 7 C 1.38811 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99780 * 185.77651 * 7 2 1 9 9 N 1.36934 * 119.99840 * 5.77240 * 7 2 1 10 10 C 1.48157 * 126.40143 * 353.06490 * 9 7 2 11 11 C 1.56169 * 107.34990 * 185.61661 * 10 9 7 12 12 C 1.53704 * 101.41589 * 21.45627 * 11 10 9 13 13 H 1.09001 * 111.10679 * 79.81533 * 12 11 10 14 14 C 1.51975 * 115.00411 * 206.99474 * 12 11 10 15 15 C 1.53893 * 107.29086 * 176.25954 * 14 12 11 16 16 N 1.46588 * 110.70487 * 308.18102 * 15 14 12 17 17 C 1.34782 * 119.75123 * 227.75122 * 16 15 14 18 18 O 1.21282 * 119.99820 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99892 * 0.02562 * 17 16 15 20 20 N 1.46504 * 109.46843 * 180.02562 * 19 17 16 21 21 C 1.36604 * 127.11653 * 264.68272 * 20 19 17 22 22 N 1.30331 * 107.28146 * 179.89810 * 21 20 19 23 23 N 1.28535 * 109.99338 * 0.37487 * 22 21 20 24 24 C 1.31031 * 109.86148 * 359.76320 * 23 22 21 25 25 O 1.35529 * 126.45223 * 179.97438 * 24 23 22 26 26 C 1.47796 * 120.49590 * 48.02253 * 16 15 14 27 27 C 1.45505 * 126.39356 * 173.07162 * 9 7 2 28 28 H 1.09002 * 109.56689 * 266.61358 * 27 9 7 29 29 H 0.97004 * 120.00580 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.91558 * 304.35929 * 10 9 7 31 31 H 1.09003 * 109.91652 * 65.45458 * 10 9 7 32 32 H 1.08997 * 110.74855 * 263.63243 * 11 10 9 33 33 H 1.08999 * 111.54596 * 139.62270 * 11 10 9 34 34 H 1.09000 * 109.89572 * 56.81372 * 14 12 11 35 35 H 1.09011 * 109.95058 * 295.73907 * 14 12 11 36 36 H 1.09005 * 109.22529 * 187.86424 * 15 14 12 37 37 H 1.08999 * 109.22803 * 68.49611 * 15 14 12 38 38 H 1.08991 * 109.47433 * 60.00215 * 19 17 16 39 39 H 1.08993 * 109.46862 * 299.99544 * 19 17 16 40 40 H 1.08000 * 126.36222 * 0.03614 * 21 20 19 41 41 H 0.96702 * 114.00103 * 269.99505 * 25 24 23 42 42 H 1.09004 * 110.06044 * 67.68770 * 26 16 15 43 43 H 1.08998 * 110.06813 * 189.24789 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5042 2.6200 0.8029 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0861 -1.2045 0.0936 9 7 1.3308 -2.3849 -0.1203 10 6 -0.1406 -2.5583 -0.1133 11 6 -0.4288 -4.0930 -0.1326 12 6 0.8967 -4.6582 0.4023 13 1 0.9466 -4.5810 1.4884 14 6 1.2269 -6.0679 -0.0596 15 6 2.6189 -6.4171 0.4960 16 7 3.5894 -5.3721 0.1568 17 6 4.7859 -5.7133 -0.3616 18 8 5.5920 -4.8524 -0.6443 19 6 5.1214 -7.1645 -0.5910 20 7 6.4686 -7.2706 -1.1568 21 6 6.8025 -7.3687 -2.4778 22 7 8.1022 -7.4397 -2.5444 23 7 8.6056 -7.4011 -1.3623 24 6 7.6480 -7.2978 -0.4738 25 8 7.8013 -7.2310 0.8711 26 6 3.2681 -3.9476 0.3846 27 6 1.9191 -3.7064 -0.2782 28 1 1.9930 -3.9487 -1.3384 29 1 -0.4851 0.8400 0.0004 30 1 -0.5612 -2.1247 0.7941 31 1 -0.5753 -2.0782 -0.9900 32 1 -0.6176 -4.4377 -1.1492 33 1 -1.2575 -4.3530 0.5260 34 1 1.2419 -6.1074 -1.1488 35 1 0.4868 -6.7689 0.3266 36 1 2.9481 -7.3649 0.0700 37 1 2.5589 -6.5131 1.5801 38 1 4.4008 -7.5990 -1.2837 39 1 5.0828 -7.7006 0.3572 40 1 6.1170 -7.3824 -3.3122 41 1 7.7964 -8.0923 1.3108 42 1 3.2043 -3.7450 1.4537 43 1 4.0290 -3.3149 -0.0723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042005073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:34 Heat of formation + Delta-G solvation = 26.521975 kcal Electronic energy + Delta-G solvation = -27828.017628 eV Core-core repulsion = 23910.544343 eV Total energy + Delta-G solvation = -3917.473285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.06876 -41.51955 -39.77885 -38.68286 -36.93405 -35.89582 -34.70827 -32.90439 -31.51223 -30.90469 -30.26918 -28.96095 -26.57453 -25.32133 -23.60003 -23.53125 -23.37527 -21.85039 -21.45560 -20.51333 -19.79093 -18.84021 -18.35432 -18.03978 -17.09048 -16.88102 -16.71376 -16.54930 -16.13872 -15.87485 -15.67439 -15.38067 -15.09531 -14.79293 -14.36334 -14.11371 -13.82189 -13.59079 -13.48120 -13.40747 -13.16603 -13.08626 -12.79736 -12.74994 -12.53999 -12.12919 -12.04005 -11.92599 -11.77370 -11.55318 -11.33060 -11.30848 -11.03713 -10.79273 -10.76073 -10.27575 -9.77081 -8.92540 -7.92881 -5.26262 0.54899 1.04803 1.39124 1.40077 1.41288 1.49224 1.73523 1.87325 2.44337 2.75276 3.26101 3.26727 3.50386 3.58617 3.72737 3.82401 3.94411 3.98384 4.03707 4.22134 4.26041 4.29265 4.29736 4.58115 4.60738 4.64420 4.73198 4.82558 4.87947 4.92421 4.94143 5.13616 5.19164 5.22817 5.35306 5.49081 5.58178 5.60597 5.68016 5.75287 6.15730 6.29054 6.48142 6.99020 7.04416 7.57760 7.73164 8.39581 9.18518 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.003489 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.224987 B = 8022.449009 C = 9202.792350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.179 3.821 11 C -0.121 4.121 12 C -0.097 4.097 13 H 0.073 0.927 14 C -0.112 4.112 15 C 0.097 3.903 16 N -0.595 5.595 17 C 0.486 3.514 18 O -0.589 6.589 19 C 0.097 3.903 20 N -0.472 5.472 21 C 0.188 3.812 22 N -0.328 5.328 23 N -0.337 5.337 24 C 0.362 3.638 25 O -0.443 6.443 26 C 0.128 3.872 27 C 0.148 3.852 28 H 0.011 0.989 29 H 0.248 0.752 30 H 0.012 0.988 31 H 0.003 0.997 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.185 0.815 39 H 0.168 0.832 40 H 0.267 0.733 41 H 0.430 0.570 42 H 0.063 0.937 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 -26.003 1.935 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.340 5.340 10 C 0.054 3.946 11 C -0.159 4.159 12 C -0.117 4.117 13 H 0.092 0.908 14 C -0.150 4.150 15 C -0.023 4.023 16 N -0.328 5.328 17 C 0.274 3.726 18 O -0.469 6.469 19 C -0.028 4.028 20 N -0.175 5.175 21 C -0.100 4.100 22 N -0.167 5.167 23 N -0.187 5.187 24 C 0.056 3.944 25 O -0.246 6.246 26 C 0.004 3.996 27 C 0.041 3.959 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.021 0.979 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.107 0.893 38 H 0.202 0.798 39 H 0.185 0.815 40 H 0.283 0.717 41 H 0.291 0.709 42 H 0.081 0.919 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.186 -24.852 1.334 25.091 hybrid contribution -0.911 1.954 0.728 2.276 sum 2.275 -22.898 2.062 23.103 Atomic orbital electron populations 1.70138 1.05986 1.25295 1.57865 1.25515 0.96505 1.00533 1.02553 0.85249 0.77859 0.80095 0.77330 1.21601 1.21474 1.19972 1.19254 0.90903 0.84058 1.42590 0.91072 1.44427 1.02654 1.01481 1.85468 1.21511 0.82796 0.92766 0.97504 1.22728 0.97637 0.94122 1.01432 1.22229 0.94200 0.95660 0.99593 0.90814 1.21847 0.96885 0.94568 1.01730 1.22286 0.87911 0.89823 1.02330 1.48315 1.15536 1.07153 1.61827 1.21554 0.81540 0.92535 0.76989 1.90812 1.49867 1.53273 1.52972 1.22235 0.81438 0.92721 1.06358 1.46641 1.07972 1.54676 1.08186 1.27245 0.95371 1.01023 0.86326 1.74097 1.07764 1.20331 1.14547 1.74465 1.25433 1.22625 0.96222 1.22165 0.82583 1.02714 0.86931 1.84949 1.93008 1.36991 1.09660 1.21366 0.96964 0.81626 0.99625 1.21246 0.92875 0.86107 0.95715 0.97126 0.94276 0.96947 0.97864 0.90931 0.89463 0.90879 0.86462 0.84798 0.89324 0.79783 0.81489 0.71712 0.70873 0.91875 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 10.48 21.65 0.23 -56.72 16 2 C -0.06 -3.32 5.49 84.86 0.47 -2.86 16 3 Si 0.97 47.38 29.56 68.60 2.03 49.41 16 4 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.24 -13.63 9.89 84.03 0.83 -12.80 16 8 H 0.07 4.06 7.37 -2.91 -0.02 4.03 16 9 N -0.62 -31.01 3.35 -666.73 -2.23 -33.24 16 10 C 0.18 8.47 5.46 87.16 0.48 8.95 16 11 C -0.12 -3.77 6.63 31.93 0.21 -3.56 16 12 C -0.10 -2.62 2.57 -10.07 -0.03 -2.64 16 13 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 14 C -0.11 -1.54 5.72 30.56 0.17 -1.36 16 15 C 0.10 0.97 6.22 86.66 0.54 1.51 16 16 N -0.60 -13.32 3.00 -817.97 -2.46 -15.78 16 17 C 0.49 11.36 7.74 87.66 0.68 12.04 16 18 O -0.59 -22.27 15.80 -3.03 -0.05 -22.32 16 19 C 0.10 0.88 5.02 85.63 0.43 1.31 16 20 N -0.47 -8.29 2.29 -647.67 -1.48 -9.77 16 21 C 0.19 3.50 12.80 179.81 2.30 5.80 16 22 N -0.33 -9.20 12.18 -59.40 -0.72 -9.92 16 23 N -0.34 -10.24 12.22 -173.68 -2.12 -12.36 16 24 C 0.36 8.55 9.22 179.70 1.66 10.20 16 25 O -0.44 -8.16 13.62 -88.33 -1.20 -9.36 16 26 C 0.13 4.54 5.68 85.88 0.49 5.02 16 27 C 0.15 5.63 2.79 45.74 0.13 5.76 16 28 H 0.01 0.46 7.93 -2.39 -0.02 0.44 16 29 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 30 H 0.01 0.65 7.45 -2.39 -0.02 0.64 16 31 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 32 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 1.03 7.98 -2.39 -0.02 1.01 16 35 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.13 -0.12 5.84 -2.38 -0.01 -0.14 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.19 -0.23 7.55 -2.39 -0.02 -0.25 16 39 H 0.17 0.12 7.99 -2.39 -0.02 0.10 16 40 H 0.27 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.43 1.90 9.06 -74.06 -0.67 1.22 16 42 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.05 2.12 6.77 -2.39 -0.02 2.10 16 Total: -1.00 -97.12 349.76 0.72 -96.40 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: 0.38 Total: -3.72 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 8.35 Total: 27.38 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -8.79 Total: -137.79 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.25 Total: -31.68 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -97.12 0.72 -96.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042005073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.922 kcal (2) G-P(sol) polarization free energy of solvation -97.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds