Wall clock time and date at job start Fri Apr 10 2020 18:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00244 * 2 1 4 4 H 1.48494 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46884 * 300.00155 * 3 2 1 6 6 H 1.48499 * 109.46942 * 59.99605 * 3 2 1 7 7 C 1.38818 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.46888 * 125.58436 * 0.02562 * 9 7 2 11 11 C 1.54057 * 107.70827 * 177.01693 * 10 9 7 12 12 C 1.54059 * 103.74839 * 342.87822 * 11 10 9 13 13 H 1.09000 * 109.16453 * 274.18858 * 12 11 10 14 14 C 1.47659 * 125.58122 * 179.97438 * 9 7 2 15 15 H 1.08999 * 110.56303 * 321.64876 * 14 9 7 16 16 C 1.52926 * 107.99493 * 83.59745 * 14 9 7 17 17 C 1.52887 * 109.77576 * 171.85823 * 16 14 9 18 18 C 1.53058 * 108.50737 * 293.97274 * 17 16 14 19 19 N 1.44188 * 111.76883 * 153.24819 * 12 11 10 20 20 C 1.34772 * 117.75956 * 93.50735 * 19 12 11 21 21 O 1.21276 * 120.00368 * 359.97438 * 20 19 12 22 22 C 1.50701 * 120.00119 * 179.97438 * 20 19 12 23 23 N 1.46496 * 109.47327 * 180.02562 * 22 20 19 24 24 C 1.36605 * 127.11865 * 265.02442 * 23 22 20 25 25 N 1.30332 * 107.27975 * 180.02562 * 24 23 22 26 26 N 1.28537 * 109.99725 * 0.02562 * 25 24 23 27 27 C 1.31045 * 109.85607 * 359.71994 * 26 25 24 28 28 O 1.35525 * 126.44693 * 180.30025 * 27 26 25 29 29 H 0.96992 * 120.00197 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.80870 * 57.47384 * 10 9 7 31 31 H 1.08993 * 109.81131 * 296.57518 * 10 9 7 32 32 H 1.09002 * 110.56753 * 224.30788 * 11 10 9 33 33 H 1.09001 * 110.56499 * 101.44704 * 11 10 9 34 34 H 1.09009 * 109.41360 * 291.93974 * 16 14 9 35 35 H 1.08997 * 109.42154 * 51.80160 * 16 14 9 36 36 H 1.09002 * 109.60896 * 174.28414 * 17 16 14 37 37 H 1.08997 * 109.64121 * 53.68692 * 17 16 14 38 38 H 1.09002 * 109.45958 * 293.80439 * 18 17 16 39 39 H 1.09000 * 109.45527 * 173.84194 * 18 17 16 40 40 H 1.09004 * 109.47253 * 300.00665 * 22 20 19 41 41 H 1.09008 * 109.47045 * 59.99987 * 22 20 19 42 42 H 1.07999 * 126.35754 * 0.03526 * 24 23 22 43 43 H 0.96703 * 113.99935 * 270.16535 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1363 -2.5310 -0.0005 11 6 -0.4600 -4.0352 -0.0765 12 6 0.8593 -4.6699 -0.5559 13 1 0.8980 -4.6356 -1.6447 14 6 1.9360 -3.7326 0.0005 15 1 2.8230 -3.7503 -0.6327 16 6 2.2790 -4.0957 1.4459 17 6 2.7259 -5.5559 1.5203 18 6 1.5335 -6.4476 1.1660 19 7 0.9840 -6.0385 -0.1194 20 6 0.5646 -7.0058 -0.9588 21 8 0.1007 -6.7114 -2.0400 22 6 0.6719 -8.4535 -0.5540 23 7 0.1541 -9.3013 -1.6306 24 6 -1.1098 -9.8063 -1.7468 25 7 -1.1481 -10.5050 -2.8463 26 7 -0.0014 -10.4748 -3.4264 27 6 0.8326 -9.7459 -2.7262 28 8 2.1268 -9.4852 -3.0323 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5569 -2.0185 -0.8658 31 1 -0.5493 -2.1099 0.9160 32 1 -1.2575 -4.2194 -0.7963 33 1 -0.7342 -4.4180 0.9066 34 1 3.0842 -3.4518 1.8000 35 1 1.3993 -3.9541 2.0737 36 1 3.0658 -5.7834 2.5307 37 1 3.5354 -5.7279 0.8109 38 1 0.7672 -6.3518 1.9353 39 1 1.8611 -7.4855 1.1073 40 1 1.7167 -8.7019 -0.3668 41 1 0.0906 -8.6213 0.3527 42 1 -1.9259 -9.6546 -1.0558 43 1 2.7531 -10.1292 -2.6743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049430070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:55 Heat of formation + Delta-G solvation = 56.668362 kcal Electronic energy + Delta-G solvation = -28061.587903 eV Core-core repulsion = 24145.421864 eV Total energy + Delta-G solvation = -3916.166039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.24619 -40.71539 -38.26366 -37.90422 -35.64367 -35.05916 -32.81144 -32.41778 -30.07282 -29.66610 -28.80000 -28.03222 -24.74123 -24.52466 -22.87182 -22.60486 -22.13852 -20.87420 -20.13351 -19.11612 -18.41071 -17.78038 -17.22211 -17.01771 -16.19829 -15.95961 -15.60117 -15.38049 -14.86313 -14.56804 -14.33870 -14.15529 -13.89469 -13.61446 -13.34961 -12.95454 -12.67091 -12.57570 -12.19561 -12.10537 -11.85901 -11.54318 -11.22548 -11.11310 -11.01882 -10.87427 -10.77346 -10.65336 -10.48595 -10.22972 -10.12035 -9.77112 -9.71427 -9.66426 -9.39669 -8.68509 -8.57091 -6.95452 -5.78706 -3.14040 1.34178 1.74693 2.30467 2.58132 2.86790 3.35069 3.40600 3.43203 3.43868 4.01250 4.08527 4.32663 4.39338 4.41531 4.64987 4.87238 4.99070 5.06630 5.23832 5.30139 5.35883 5.38069 5.49668 5.52450 5.61658 5.74161 5.80764 5.91637 6.07196 6.15450 6.18814 6.23743 6.40836 6.44316 6.58923 6.79615 6.93032 7.04338 7.22913 7.48699 7.54421 7.75566 7.96029 8.17157 8.43098 9.13038 9.72765 10.36619 11.32174 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.024735 B = 0.003099 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.726793 B = 9034.455769 C = 9323.539066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.135 3.865 13 H 0.092 0.908 14 C 0.162 3.838 15 H 0.055 0.945 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.104 3.896 19 N -0.579 5.579 20 C 0.487 3.513 21 O -0.517 6.517 22 C 0.090 3.910 23 N -0.473 5.473 24 C 0.175 3.825 25 N -0.281 5.281 26 N -0.287 5.287 27 C 0.363 3.637 28 O -0.432 6.432 29 H 0.253 0.747 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.225 0.775 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -19.961 6.529 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.031 3.969 13 H 0.110 0.890 14 C 0.053 3.947 15 H 0.073 0.927 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.019 4.019 19 N -0.312 5.312 20 C 0.271 3.729 21 O -0.391 6.391 22 C -0.037 4.037 23 N -0.176 5.176 24 C -0.112 4.112 25 N -0.122 5.122 26 N -0.138 5.138 27 C 0.058 3.942 28 O -0.231 6.231 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.241 0.759 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 2.709 -19.855 4.509 20.540 hybrid contribution 1.251 1.582 1.540 2.537 sum 3.960 -18.273 6.048 19.651 Atomic orbital electron populations 1.69969 1.04907 1.25081 1.56637 1.24816 0.95717 0.97721 1.01941 0.86039 0.78699 0.83678 0.77281 1.20481 1.21677 1.21735 1.19050 0.90447 0.82057 1.44241 0.90312 1.44513 1.01480 0.99227 1.86757 1.21070 0.84301 0.87845 1.01397 1.22983 0.96354 0.99550 0.99960 1.21187 0.97026 0.78510 1.00197 0.88993 1.20901 0.93922 0.86193 0.93700 0.92703 1.22115 1.01678 0.93304 1.00013 1.21835 0.96732 0.96882 1.01597 1.21597 0.96889 0.98252 0.85130 1.47061 1.60835 1.06420 1.16837 1.20572 0.79757 0.87225 0.85356 1.90816 1.43790 1.82794 1.21744 1.21849 1.03229 0.89030 0.89641 1.46522 1.12362 1.39103 1.19588 1.26371 0.87105 0.97614 1.00135 1.74210 1.13967 1.19089 1.04930 1.74614 0.97635 1.18208 1.23317 1.22103 0.88214 0.97566 0.86276 1.85009 1.10013 1.53090 1.74973 0.93688 0.92897 0.94023 0.91922 0.92530 0.91621 0.91824 0.90825 0.91542 0.91244 0.90742 0.85844 0.85165 0.75868 0.74016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.29 55.49 0.57 -25.80 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.12 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.33 2.94 -163.75 -0.48 -14.82 16 10 C 0.18 4.22 5.39 -3.28 -0.02 4.20 16 11 C -0.15 -2.77 6.45 -25.63 -0.17 -2.94 16 12 C 0.13 2.34 2.72 -68.50 -0.19 2.16 16 13 H 0.09 1.87 7.10 -51.93 -0.37 1.50 16 14 C 0.16 3.05 3.29 -67.22 -0.22 2.83 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.13 -2.03 5.31 -26.83 -0.14 -2.17 16 17 C -0.13 -1.35 6.10 -26.76 -0.16 -1.51 16 18 C 0.10 0.89 6.06 -4.47 -0.03 0.87 16 19 N -0.58 -7.35 2.80 -167.65 -0.47 -7.82 16 20 C 0.49 6.22 7.65 -10.99 -0.08 6.14 16 21 O -0.52 -9.41 15.71 5.56 0.09 -9.33 16 22 C 0.09 0.65 5.02 -5.20 -0.03 0.62 16 23 N -0.47 -4.83 2.29 -121.04 -0.28 -5.10 16 24 C 0.17 1.80 12.80 -89.07 -1.14 0.66 16 25 N -0.28 -3.94 12.18 29.87 0.36 -3.58 16 26 N -0.29 -4.31 12.22 29.65 0.36 -3.95 16 27 C 0.36 4.51 9.22 -88.75 -0.82 3.70 16 28 O -0.43 -4.39 13.62 -18.27 -0.25 -4.64 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 1.42 7.25 -51.93 -0.38 1.04 16 31 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 35 H 0.06 1.06 8.02 -51.93 -0.42 0.65 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.34 5.81 -51.93 -0.30 0.04 16 40 H 0.12 0.53 7.31 -51.93 -0.38 0.15 16 41 H 0.13 0.45 8.03 -51.92 -0.42 0.03 16 42 H 0.23 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.40 1.46 9.06 45.56 0.41 1.88 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -37.67 350.04 -8.25 -45.92 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.17 Total: -0.78 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -3.24 Total: 8.03 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.07 Total: -61.07 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.16 Total: -13.97 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.67 -8.25 -45.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049430070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.591 kcal (2) G-P(sol) polarization free energy of solvation -37.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds