Wall clock time and date at job start Fri Apr 10 2020 18:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00373 * 2 1 4 4 H 1.48504 * 109.47165 * 240.00106 * 3 2 1 5 5 H 1.48498 * 109.47017 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47066 * 120.00188 * 3 2 1 7 7 C 1.38819 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99852 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.46927 * 125.37409 * 179.97438 * 9 7 2 11 11 C 1.54184 * 106.26007 * 162.11180 * 10 9 7 12 12 H 1.09001 * 109.29019 * 271.45558 * 11 10 9 13 13 C 1.50709 * 110.50753 * 151.09927 * 11 10 9 14 14 C 1.51326 * 113.54600 * 289.39534 * 13 11 10 15 15 C 1.51632 * 111.98153 * 304.60623 * 14 13 11 16 16 N 1.44513 * 112.65011 * 42.76270 * 15 14 13 17 17 C 1.34774 * 116.63135 * 154.60211 * 16 15 14 18 18 O 1.21281 * 120.00171 * 174.23063 * 17 16 15 19 19 C 1.50698 * 119.99986 * 354.23500 * 17 16 15 20 20 N 1.46500 * 109.47201 * 180.02562 * 19 17 16 21 21 C 1.36608 * 127.11574 * 265.02418 * 20 19 17 22 22 N 1.30338 * 107.27964 * 179.97438 * 21 20 19 23 23 N 1.28540 * 109.98973 * 359.73117 * 22 21 20 24 24 C 1.31027 * 109.86082 * 0.44613 * 23 22 21 25 25 O 1.35537 * 126.44685 * 179.82019 * 24 23 22 26 26 C 1.44102 * 126.73384 * 334.88313 * 16 15 14 27 27 H 1.09000 * 109.10763 * 253.58008 * 26 16 15 28 28 C 1.46820 * 125.37543 * 359.95518 * 9 7 2 29 29 H 0.97002 * 119.99188 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.09480 * 42.91619 * 10 9 7 31 31 H 1.08994 * 110.14841 * 281.33854 * 10 9 7 32 32 H 1.09000 * 108.67416 * 168.34498 * 13 11 10 33 33 H 1.09005 * 108.56604 * 50.36635 * 13 11 10 34 34 H 1.09003 * 108.98006 * 183.96420 * 14 13 11 35 35 H 1.08997 * 108.91877 * 65.20841 * 14 13 11 36 36 H 1.08995 * 108.84951 * 281.94552 * 15 14 13 37 37 H 1.09007 * 108.84696 * 163.57626 * 15 14 13 38 38 H 1.08999 * 109.47353 * 59.99888 * 19 17 16 39 39 H 1.09001 * 109.47387 * 299.99943 * 19 17 16 40 40 H 1.07994 * 126.36188 * 0.02562 * 21 20 19 41 41 H 0.96700 * 114.00605 * 269.69394 * 25 24 23 42 42 H 1.08992 * 109.84102 * 300.43526 * 28 9 7 43 43 H 1.08998 * 109.83915 * 61.34947 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.9376 -3.7238 0.0005 11 6 0.8370 -4.7031 0.4552 12 1 0.8503 -4.7803 1.5424 13 6 1.0632 -6.0671 -0.1446 14 6 0.8049 -6.1226 -1.6346 15 6 -0.5887 -5.6402 -1.9875 16 7 -0.9689 -4.4537 -1.2552 17 6 -1.8949 -3.6604 -1.8292 18 8 -2.3357 -2.7065 -1.2237 19 6 -2.3828 -3.9587 -3.2235 20 7 -3.3782 -2.9583 -3.6170 21 6 -4.7364 -3.0615 -3.5130 22 7 -5.2453 -1.9537 -3.9740 23 7 -4.3056 -1.1630 -4.3534 24 6 -3.1408 -1.7318 -4.1622 25 8 -1.9278 -1.1986 -4.4476 26 6 -0.4563 -4.0283 0.0225 27 1 -1.2152 -4.1987 0.7861 28 6 -0.1363 -2.5255 0.0009 29 1 -0.4849 0.8401 0.0004 30 1 2.7752 -3.7519 0.6976 31 1 2.2769 -3.9813 -1.0027 32 1 0.4037 -6.7798 0.3505 33 1 2.0962 -6.3611 0.0415 34 1 0.9211 -7.1511 -1.9765 35 1 1.5366 -5.4954 -2.1438 36 1 -1.3024 -6.4339 -1.7670 37 1 -0.6261 -5.4222 -3.0549 38 1 -2.8351 -4.9501 -3.2459 39 1 -1.5426 -3.9269 -3.9171 40 1 -5.2863 -3.9042 -3.1208 41 1 -1.6110 -1.3967 -5.3394 42 1 -0.5529 -2.0433 0.8851 43 1 -0.5508 -2.0706 -0.8986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050026637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:02 Heat of formation + Delta-G solvation = 68.755519 kcal Electronic energy + Delta-G solvation = -28982.043511 eV Core-core repulsion = 25066.401610 eV Total energy + Delta-G solvation = -3915.641901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.92984 -40.72982 -38.00532 -37.51138 -35.62657 -34.71348 -33.38097 -32.13566 -29.92424 -29.71961 -28.70839 -26.87982 -25.73180 -24.15990 -22.73905 -22.31621 -22.08990 -20.96479 -19.78255 -18.77153 -18.01947 -17.56544 -16.88438 -16.70250 -16.00818 -15.77379 -15.64091 -15.09704 -14.63481 -14.51793 -14.26233 -14.08583 -13.81248 -13.57491 -13.41580 -12.74611 -12.61543 -12.35413 -12.25943 -11.71157 -11.57327 -11.45547 -11.20179 -11.00637 -10.89420 -10.74676 -10.61372 -10.40261 -10.26480 -10.16638 -10.11880 -9.92472 -9.63620 -9.20384 -9.06735 -8.50480 -8.18478 -6.72736 -5.58083 -2.95631 1.66166 2.09044 2.69188 2.88435 3.19698 3.45647 3.49264 3.53539 3.80139 4.32801 4.34880 4.56512 4.56744 4.64118 4.72511 4.76330 4.94641 5.07421 5.22597 5.29201 5.36356 5.57905 5.60858 5.66631 5.69937 5.79559 5.85932 5.94892 5.97725 6.09501 6.11526 6.34530 6.49676 6.52919 6.63365 6.66255 6.96511 7.38376 7.46449 7.69052 7.75657 8.03014 8.30559 8.43754 8.74057 9.30544 9.91871 10.55212 11.50076 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.006187 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.250158 B = 4524.640746 C = 6699.381944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.606 5.606 10 C 0.143 3.857 11 C -0.102 4.102 12 H 0.081 0.919 13 C -0.102 4.102 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.584 5.584 17 C 0.480 3.520 18 O -0.479 6.479 19 C 0.090 3.910 20 N -0.472 5.472 21 C 0.167 3.833 22 N -0.283 5.283 23 N -0.290 5.290 24 C 0.373 3.627 25 O -0.424 6.424 26 C 0.131 3.869 27 H 0.059 0.941 28 C 0.171 3.829 29 H 0.254 0.746 30 H 0.032 0.968 31 H 0.014 0.986 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.222 0.778 41 H 0.400 0.600 42 H 0.052 0.948 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -18.691 -8.202 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.122 4.122 12 H 0.099 0.901 13 C -0.140 4.140 14 C -0.165 4.165 15 C -0.011 4.011 16 N -0.319 5.319 17 C 0.263 3.737 18 O -0.351 6.351 19 C -0.038 4.038 20 N -0.175 5.175 21 C -0.120 4.120 22 N -0.124 5.124 23 N -0.141 5.141 24 C 0.068 3.932 25 O -0.222 6.222 26 C 0.028 3.972 27 H 0.077 0.923 28 C 0.046 3.954 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.238 0.762 41 H 0.256 0.744 42 H 0.070 0.930 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.783 -16.620 -7.690 18.699 hybrid contribution 1.830 -0.402 0.060 1.874 sum -1.953 -17.022 -7.630 18.755 Atomic orbital electron populations 1.69972 1.04545 1.25221 1.55313 1.24855 0.95673 0.97587 1.01915 0.86277 0.78459 0.83685 0.77727 1.21262 1.21562 1.21234 1.18884 0.90169 0.82350 1.45571 0.90732 1.44354 1.01680 0.99816 1.87463 1.21367 0.93851 0.86057 0.97125 1.21325 0.95708 0.94546 1.00605 0.90066 1.20483 1.01936 0.96592 0.94980 1.21106 0.96270 1.01499 0.97665 1.20852 0.97345 0.87402 0.95512 1.46710 1.40604 1.23386 1.21194 1.20458 0.81473 0.83963 0.87797 1.90927 1.54676 1.26591 1.62894 1.21847 0.92832 0.91979 0.97098 1.46497 1.08214 1.14985 1.47807 1.26239 0.79791 1.01683 1.04267 1.74166 1.23525 0.99869 1.14845 1.74591 0.94546 1.22961 1.21969 1.22137 0.88595 0.82689 0.99777 1.85142 1.27614 1.71838 1.37590 1.21127 0.94632 0.99063 0.82409 0.92291 1.21645 0.83817 0.86397 1.03525 0.93548 0.94974 0.96862 0.92401 0.91371 0.90638 0.91006 0.92408 0.91392 0.85763 0.86197 0.76158 0.74357 0.93009 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.44 10.26 55.49 0.57 -27.87 16 2 C 0.00 -0.07 5.48 -17.43 -0.10 -0.17 16 3 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.93 10.26 -15.06 -0.15 -7.09 16 8 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.61 -15.75 3.39 -171.51 -0.58 -16.33 16 10 C 0.14 2.86 6.65 -3.19 -0.02 2.84 16 11 C -0.10 -1.65 3.05 -91.58 -0.28 -1.93 16 12 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.10 -1.15 5.17 -28.72 -0.15 -1.30 16 14 C -0.13 -1.22 5.83 -28.27 -0.16 -1.39 16 15 C 0.11 1.07 5.70 -5.80 -0.03 1.04 16 16 N -0.58 -8.72 3.09 -170.33 -0.53 -9.25 16 17 C 0.48 7.85 6.84 -10.99 -0.08 7.78 16 18 O -0.48 -10.82 13.75 5.56 0.08 -10.74 16 19 C 0.09 0.95 5.04 -5.19 -0.03 0.93 16 20 N -0.47 -6.48 2.29 -121.04 -0.28 -6.76 16 21 C 0.17 2.18 12.80 -89.06 -1.14 1.04 16 22 N -0.28 -4.81 12.18 29.87 0.36 -4.44 16 23 N -0.29 -5.44 12.22 29.65 0.36 -5.08 16 24 C 0.37 6.27 9.22 -88.77 -0.82 5.45 16 25 O -0.42 -6.77 13.62 -18.31 -0.25 -7.02 16 26 C 0.13 2.44 3.09 -69.30 -0.21 2.23 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 C 0.17 4.33 4.13 -3.53 -0.01 4.31 16 29 H 0.25 7.97 8.31 -40.82 -0.34 7.63 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.01 0.27 6.69 -51.93 -0.35 -0.08 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.80 6.99 -51.93 -0.36 0.44 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.48 6.07 -51.93 -0.32 0.17 16 38 H 0.12 0.72 7.91 -51.93 -0.41 0.30 16 39 H 0.12 1.02 7.38 -51.93 -0.38 0.64 16 40 H 0.22 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.40 3.54 9.06 45.56 0.41 3.95 16 42 H 0.05 1.53 7.36 -51.93 -0.38 1.15 16 43 H 0.08 2.17 4.71 -51.93 -0.24 1.93 16 LS Contribution 342.28 15.07 5.16 5.16 Total: -1.00 -41.40 342.28 -8.27 -49.67 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.96 Total: 0.77 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: -3.19 Total: 13.75 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -0.09 Total: -69.73 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.17 Total: -17.76 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -41.40 -8.27 -49.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050026637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.430 kcal (2) G-P(sol) polarization free energy of solvation -41.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds