Wall clock time and date at job start Fri Apr 10 2020 18:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00373 * 2 1 4 4 H 1.48504 * 109.47165 * 240.00106 * 3 2 1 5 5 H 1.48498 * 109.47017 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47066 * 120.00188 * 3 2 1 7 7 C 1.38819 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99852 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.46927 * 125.37409 * 179.97438 * 9 7 2 11 11 C 1.54184 * 106.26007 * 162.11180 * 10 9 7 12 12 H 1.09001 * 109.29019 * 271.45558 * 11 10 9 13 13 C 1.50709 * 110.50753 * 151.09927 * 11 10 9 14 14 C 1.51326 * 113.54600 * 289.39534 * 13 11 10 15 15 C 1.51632 * 111.98153 * 304.60623 * 14 13 11 16 16 N 1.44513 * 112.65011 * 42.76270 * 15 14 13 17 17 C 1.34774 * 116.63135 * 154.60211 * 16 15 14 18 18 O 1.21281 * 120.00171 * 174.23063 * 17 16 15 19 19 C 1.50698 * 119.99986 * 354.23500 * 17 16 15 20 20 N 1.46500 * 109.47201 * 180.02562 * 19 17 16 21 21 C 1.36608 * 127.11574 * 265.02418 * 20 19 17 22 22 N 1.30338 * 107.27964 * 179.97438 * 21 20 19 23 23 N 1.28540 * 109.98973 * 359.73117 * 22 21 20 24 24 C 1.31027 * 109.86082 * 0.44613 * 23 22 21 25 25 O 1.35537 * 126.44685 * 179.82019 * 24 23 22 26 26 C 1.44102 * 126.73384 * 334.88313 * 16 15 14 27 27 H 1.09000 * 109.10763 * 253.58008 * 26 16 15 28 28 C 1.46820 * 125.37543 * 359.95518 * 9 7 2 29 29 H 0.97002 * 119.99188 * 359.97438 * 1 2 3 30 30 H 1.09002 * 110.09480 * 42.91619 * 10 9 7 31 31 H 1.08994 * 110.14841 * 281.33854 * 10 9 7 32 32 H 1.09000 * 108.67416 * 168.34498 * 13 11 10 33 33 H 1.09005 * 108.56604 * 50.36635 * 13 11 10 34 34 H 1.09003 * 108.98006 * 183.96420 * 14 13 11 35 35 H 1.08997 * 108.91877 * 65.20841 * 14 13 11 36 36 H 1.08995 * 108.84951 * 281.94552 * 15 14 13 37 37 H 1.09007 * 108.84696 * 163.57626 * 15 14 13 38 38 H 1.08999 * 109.47353 * 59.99888 * 19 17 16 39 39 H 1.09001 * 109.47387 * 299.99943 * 19 17 16 40 40 H 1.07994 * 126.36188 * 0.02562 * 21 20 19 41 41 H 0.96700 * 114.00605 * 269.69394 * 25 24 23 42 42 H 1.08992 * 109.84102 * 300.43526 * 28 9 7 43 43 H 1.08998 * 109.83915 * 61.34947 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.9376 -3.7238 0.0005 11 6 0.8370 -4.7031 0.4552 12 1 0.8503 -4.7803 1.5424 13 6 1.0632 -6.0671 -0.1446 14 6 0.8049 -6.1226 -1.6346 15 6 -0.5887 -5.6402 -1.9875 16 7 -0.9689 -4.4537 -1.2552 17 6 -1.8949 -3.6604 -1.8292 18 8 -2.3357 -2.7065 -1.2237 19 6 -2.3828 -3.9587 -3.2235 20 7 -3.3782 -2.9583 -3.6170 21 6 -4.7364 -3.0615 -3.5130 22 7 -5.2453 -1.9537 -3.9740 23 7 -4.3056 -1.1630 -4.3534 24 6 -3.1408 -1.7318 -4.1622 25 8 -1.9278 -1.1986 -4.4476 26 6 -0.4563 -4.0283 0.0225 27 1 -1.2152 -4.1987 0.7861 28 6 -0.1363 -2.5255 0.0009 29 1 -0.4849 0.8401 0.0004 30 1 2.7752 -3.7519 0.6976 31 1 2.2769 -3.9813 -1.0027 32 1 0.4037 -6.7798 0.3505 33 1 2.0962 -6.3611 0.0415 34 1 0.9211 -7.1511 -1.9765 35 1 1.5366 -5.4954 -2.1438 36 1 -1.3024 -6.4339 -1.7670 37 1 -0.6261 -5.4222 -3.0549 38 1 -2.8351 -4.9501 -3.2459 39 1 -1.5426 -3.9269 -3.9171 40 1 -5.2863 -3.9042 -3.1208 41 1 -1.6110 -1.3967 -5.3394 42 1 -0.5529 -2.0433 0.8851 43 1 -0.5508 -2.0706 -0.8986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050026637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:01 Heat of formation + Delta-G solvation = 34.000512 kcal Electronic energy + Delta-G solvation = -28983.550601 eV Core-core repulsion = 25066.401610 eV Total energy + Delta-G solvation = -3917.148991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.04914 -41.99326 -39.36285 -38.70858 -37.09108 -35.85191 -34.76248 -33.78520 -31.63826 -30.90333 -29.87448 -28.34293 -27.33665 -25.61200 -23.88651 -23.45603 -23.32594 -22.56727 -21.16674 -19.90715 -19.32536 -18.91563 -18.34780 -17.96134 -17.25797 -17.03277 -16.94400 -16.51983 -15.97067 -15.84105 -15.64228 -15.41453 -15.10965 -14.77841 -14.42911 -14.14414 -14.03845 -13.71430 -13.41827 -13.32065 -13.03206 -12.94037 -12.77189 -12.64642 -12.44527 -12.20713 -12.05417 -11.81059 -11.73582 -11.59093 -11.43705 -11.32786 -11.29441 -10.77583 -10.44126 -10.24572 -9.46246 -8.87586 -7.82989 -5.22378 0.57004 1.10789 1.36767 1.41238 1.48751 1.53258 1.75272 2.09243 2.45437 2.77386 3.30453 3.34466 3.57068 3.63704 3.73728 3.77240 3.86165 3.96868 4.03308 4.07215 4.13160 4.24600 4.52695 4.62729 4.64673 4.70472 4.72282 4.85361 4.89773 4.93907 4.99095 5.15176 5.22952 5.38984 5.41609 5.48708 5.51665 5.62075 5.77855 5.98934 6.20191 6.38376 6.49436 7.05391 7.21788 7.59121 7.79483 8.40337 9.21851 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.006187 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.250158 B = 4524.640746 C = 6699.381944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.084 0.916 9 N -0.630 5.630 10 C 0.136 3.864 11 C -0.088 4.088 12 H 0.078 0.922 13 C -0.099 4.099 14 C -0.127 4.127 15 C 0.095 3.905 16 N -0.580 5.580 17 C 0.468 3.532 18 O -0.558 6.558 19 C 0.098 3.902 20 N -0.470 5.470 21 C 0.190 3.810 22 N -0.328 5.328 23 N -0.337 5.337 24 C 0.360 3.640 25 O -0.449 6.449 26 C 0.147 3.853 27 H 0.048 0.952 28 C 0.187 3.813 29 H 0.237 0.763 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.191 0.809 39 H 0.148 0.852 40 H 0.275 0.725 41 H 0.425 0.575 42 H -0.015 1.015 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -23.520 -9.662 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.198 1.198 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.102 0.898 9 N -0.357 5.357 10 C 0.011 3.989 11 C -0.107 4.107 12 H 0.096 0.904 13 C -0.137 4.137 14 C -0.164 4.164 15 C -0.026 4.026 16 N -0.314 5.314 17 C 0.254 3.746 18 O -0.435 6.435 19 C -0.028 4.028 20 N -0.173 5.173 21 C -0.097 4.097 22 N -0.168 5.168 23 N -0.188 5.188 24 C 0.053 3.947 25 O -0.251 6.251 26 C 0.042 3.958 27 H 0.066 0.934 28 C 0.061 3.939 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.208 0.792 39 H 0.166 0.834 40 H 0.291 0.709 41 H 0.286 0.714 42 H 0.004 0.996 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.470 -21.550 -9.198 23.560 hybrid contribution 1.524 1.015 0.567 1.918 sum -0.946 -20.534 -8.630 22.294 Atomic orbital electron populations 1.70323 1.06326 1.24567 1.57526 1.25750 0.96419 1.01299 1.02758 0.85219 0.77055 0.78930 0.78568 1.19813 1.22956 1.19722 1.19356 0.90869 0.83746 1.43533 0.89791 1.44711 1.02432 1.01433 1.87135 1.21637 0.95124 0.84252 0.97880 1.21310 0.92153 0.96386 1.00886 0.90364 1.20518 1.03600 0.93055 0.96477 1.21184 0.95573 1.03822 0.95856 1.21449 0.98526 0.85928 0.96647 1.46769 1.39699 1.24904 1.19980 1.21549 0.80727 0.82668 0.89632 1.90917 1.57518 1.29862 1.65243 1.22236 0.93718 0.93681 0.93118 1.46635 1.09024 1.14512 1.47098 1.27296 0.79688 1.01586 1.01153 1.74050 1.24008 1.01514 1.17182 1.74449 0.95784 1.24605 1.23935 1.22225 0.88276 0.83884 1.00285 1.85067 1.27530 1.72582 1.39901 1.20560 0.95702 0.94774 0.84782 0.93444 1.21164 0.83139 0.90796 0.98788 0.95343 0.94737 0.95464 0.89840 0.89884 0.86074 0.92938 0.88199 0.88057 0.79169 0.83438 0.70927 0.71426 0.99631 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.44 10.26 21.65 0.22 -63.22 16 2 C -0.07 -4.25 5.48 84.86 0.47 -3.78 16 3 Si 0.97 49.52 29.55 68.60 2.03 51.55 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 6 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.25 -14.56 10.26 84.04 0.86 -13.70 16 8 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 9 N -0.63 -33.87 3.39 -696.53 -2.36 -36.23 16 10 C 0.14 5.36 6.65 86.70 0.58 5.93 16 11 C -0.09 -2.67 3.05 -11.42 -0.03 -2.71 16 12 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.10 -1.74 5.17 29.30 0.15 -1.59 16 14 C -0.13 -1.66 5.83 29.60 0.17 -1.48 16 15 C 0.10 1.23 5.70 86.30 0.49 1.72 16 16 N -0.58 -15.89 3.09 -811.19 -2.51 -18.40 16 17 C 0.47 14.72 6.84 87.66 0.60 15.32 16 18 O -0.56 -26.43 13.75 -3.03 -0.04 -26.47 16 19 C 0.10 1.68 5.04 85.63 0.43 2.11 16 20 N -0.47 -12.07 2.29 -647.66 -1.48 -13.56 16 21 C 0.19 4.57 12.80 179.80 2.30 6.87 16 22 N -0.33 -11.21 12.18 -59.40 -0.72 -11.94 16 23 N -0.34 -13.15 12.22 -173.68 -2.12 -15.27 16 24 C 0.36 12.31 9.22 179.70 1.66 13.97 16 25 O -0.45 -14.83 13.62 -88.42 -1.20 -16.03 16 26 C 0.15 5.50 3.09 45.38 0.14 5.64 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 C 0.19 10.05 4.13 86.54 0.36 10.41 16 29 H 0.24 16.12 8.31 -92.71 -0.77 15.35 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.03 1.03 6.69 -2.39 -0.02 1.01 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.29 8.10 -2.38 -0.02 1.27 16 34 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.91 6.99 -2.39 -0.02 0.90 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.70 6.07 -2.38 -0.01 0.68 16 38 H 0.19 0.75 7.91 -2.39 -0.02 0.73 16 39 H 0.15 1.78 7.38 -2.39 -0.02 1.76 16 40 H 0.28 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.42 7.65 9.06 -74.06 -0.67 6.98 16 42 H -0.01 -0.95 7.36 -2.39 -0.02 -0.97 16 43 H 0.04 2.36 4.71 -2.39 -0.01 2.35 16 Total: -1.00 -105.59 342.28 0.36 -105.22 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.38 Total: 5.64 kcal Atomic # 6 Polarization: 30.53 SS G_CDS: 8.17 Total: 38.70 kcal Atomic # 7 Polarization: -149.64 SS G_CDS: -8.98 Total: -158.62 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.25 Total: -42.50 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.03 Total: 51.55 kcal Total: -105.59 0.36 -105.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050026637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.224 kcal (2) G-P(sol) polarization free energy of solvation -105.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds