Wall clock time and date at job start Fri Apr 10 2020 18:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99971 * 2 1 4 4 H 1.48502 * 109.47048 * 270.00322 * 3 2 1 5 5 H 1.48494 * 109.47073 * 30.00536 * 3 2 1 6 6 H 1.48501 * 109.46804 * 150.00148 * 3 2 1 7 7 C 1.38814 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99769 * 197.00149 * 7 2 1 9 9 N 1.36933 * 120.00516 * 16.99366 * 7 2 1 10 10 C 1.47080 * 120.88558 * 206.58283 * 9 7 2 11 11 C 1.53237 * 108.52210 * 231.20948 * 10 9 7 12 12 N 1.46901 * 109.33678 * 306.16814 * 11 10 9 13 13 C 1.46903 * 111.00104 * 187.25628 * 12 11 10 14 14 H 1.08998 * 110.88267 * 297.57411 * 13 12 11 15 15 C 1.55152 * 111.00939 * 173.64829 * 13 12 11 16 16 C 1.54319 * 102.94293 * 206.42334 * 15 13 12 17 17 N 1.47019 * 107.27539 * 22.19209 * 16 15 13 18 18 C 1.34769 * 125.65106 * 181.32454 * 17 16 15 19 19 O 1.21499 * 120.00303 * 179.69067 * 18 17 16 20 20 C 1.48280 * 119.99992 * 359.68956 * 18 17 16 21 21 C 1.47483 * 128.71097 * 179.70045 * 20 18 17 22 22 N 1.30651 * 102.71545 * 179.90895 * 21 20 18 23 23 O 1.20837 * 109.61892 * 0.36598 * 22 21 20 24 24 N 1.20907 * 115.90530 * 359.73913 * 23 22 21 25 25 C 1.47432 * 108.69904 * 1.06018 * 17 16 15 26 26 C 1.46896 * 111.27288 * 63.10707 * 12 11 10 27 27 C 1.47082 * 120.87951 * 26.60573 * 9 7 2 28 28 H 0.96998 * 119.99862 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.62756 * 111.49510 * 10 9 7 30 30 H 1.09007 * 109.62366 * 350.91450 * 10 9 7 31 31 H 1.08994 * 109.49276 * 186.20825 * 11 10 9 32 32 H 1.08999 * 109.51577 * 66.13653 * 11 10 9 33 33 H 1.08999 * 110.71853 * 324.78703 * 15 13 12 34 34 H 1.08997 * 110.72034 * 87.87719 * 15 13 12 35 35 H 1.08998 * 109.88033 * 262.77001 * 16 15 13 36 36 H 1.09003 * 109.88239 * 141.61062 * 16 15 13 37 37 H 1.08001 * 128.64507 * 0.03557 * 21 20 18 38 38 H 1.08999 * 110.36610 * 94.71107 * 25 17 16 39 39 H 1.08998 * 110.36250 * 216.92286 * 25 17 16 40 40 H 1.08992 * 109.49463 * 56.85316 * 26 12 11 41 41 H 1.08992 * 109.49584 * 176.93645 * 26 12 11 42 42 H 1.09000 * 109.62945 * 248.50596 * 27 9 7 43 43 H 1.08999 * 109.62582 * 9.08273 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0549 -1.2228 0.2730 9 7 1.3705 -2.3621 -0.3476 10 6 1.8310 -3.6611 0.1659 11 6 2.0031 -4.6191 -1.0177 12 7 0.7557 -4.6642 -1.7923 13 6 0.8198 -5.6984 -2.8337 14 1 1.6112 -5.4795 -3.5504 15 6 -0.5493 -5.8556 -3.5465 16 6 -0.5153 -7.3167 -4.0419 17 7 0.4588 -8.0374 -3.2094 18 6 0.7973 -9.3351 -3.3418 19 8 1.6225 -9.8268 -2.5978 20 6 0.1627 -10.1631 -4.3956 21 6 0.3905 -11.5852 -4.7133 22 7 -0.4234 -11.7900 -5.7146 23 8 -1.0110 -10.7670 -5.9757 24 7 -0.7408 -9.8117 -5.2855 25 6 1.0088 -7.1036 -2.2098 26 6 0.4408 -3.3519 -2.3723 27 6 0.2048 -2.3419 -1.2443 28 1 -0.4850 0.8400 0.0004 29 1 1.0920 -4.0638 0.8586 30 1 2.7857 -3.5352 0.6768 31 1 2.2373 -5.6169 -0.6469 32 1 2.8146 -4.2682 -1.6552 33 1 -1.3692 -5.7055 -2.8441 34 1 -0.6296 -5.1631 -4.3844 35 1 -0.2047 -7.3468 -5.0862 36 1 -1.5016 -7.7680 -3.9332 37 1 1.0613 -12.2839 -4.2357 38 1 0.4554 -7.1807 -1.2738 39 1 2.0664 -7.3070 -2.0422 40 1 1.2739 -3.0182 -2.9908 41 1 -0.4580 -3.4307 -2.9839 42 1 -0.6905 -2.6178 -0.6872 43 1 0.0842 -1.3439 -1.6656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052099063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:18 Heat of formation + Delta-G solvation = 133.587528 kcal Electronic energy + Delta-G solvation = -27178.198749 eV Core-core repulsion = 23265.368175 eV Total energy + Delta-G solvation = -3912.830574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.33095 -40.47454 -38.66998 -36.97810 -35.20550 -34.90319 -34.19478 -31.80398 -30.48843 -30.24635 -28.78049 -26.84392 -25.60122 -24.60288 -23.59727 -22.90097 -22.20938 -20.63979 -20.20138 -19.45702 -19.20227 -18.48992 -17.82316 -17.18667 -16.40145 -16.11102 -15.26726 -15.09205 -14.82483 -14.38292 -14.15215 -14.06825 -13.54514 -13.42600 -13.30766 -13.25987 -12.98841 -12.79238 -12.55715 -12.27480 -11.86572 -11.77820 -11.36632 -11.30675 -11.20821 -11.09295 -10.97070 -10.79949 -10.72259 -10.47259 -10.33919 -10.08642 -9.77540 -9.64760 -9.06055 -8.54322 -7.97919 -6.70857 -5.81393 -3.22595 0.33716 0.90102 2.11096 2.54253 2.96434 3.07185 3.35679 3.42858 3.43930 3.44484 4.09393 4.16297 4.35184 4.47226 4.48795 4.52007 4.89848 4.90850 5.10429 5.19284 5.35841 5.39192 5.39956 5.58304 5.71040 5.72936 5.79527 5.84969 5.87389 6.07161 6.09580 6.18260 6.27185 6.47697 6.62938 6.87796 6.94854 7.18163 7.46639 7.49572 7.56861 7.63884 7.77872 7.98490 8.40155 9.18114 9.81217 10.39309 11.27496 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.039252 B = 0.002399 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.166120 B =11668.526667 C =12133.650771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.041 3.959 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.053 0.947 15 C -0.123 4.123 16 C 0.102 3.898 17 N -0.597 5.597 18 C 0.617 3.383 19 O -0.515 6.515 20 C -0.036 4.036 21 C 0.038 3.962 22 N -0.354 5.354 23 O 0.340 5.660 24 N -0.317 5.317 25 C 0.117 3.883 26 C 0.036 3.964 27 C 0.178 3.822 28 H 0.254 0.746 29 H 0.027 0.973 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.228 0.772 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.026 0.974 41 H 0.064 0.936 42 H 0.027 0.973 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -19.444 -11.149 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.089 4.089 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.071 0.929 15 C -0.161 4.161 16 C -0.021 4.021 17 N -0.330 5.330 18 C 0.401 3.599 19 O -0.390 6.390 20 C -0.201 4.201 21 C -0.148 4.148 22 N -0.077 5.077 23 O 0.115 5.885 24 N -0.038 5.038 25 C -0.005 4.005 26 C -0.093 4.093 27 C 0.052 3.948 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.244 0.756 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.518 -19.606 -11.254 22.746 hybrid contribution 1.676 0.952 0.044 1.928 sum -0.842 -18.654 -11.210 21.779 Atomic orbital electron populations 1.70025 1.05184 1.25500 1.54096 1.25026 0.95326 0.98367 1.01021 0.86280 0.79108 0.83680 0.77651 1.21509 1.21733 1.20469 1.19204 0.92596 0.84771 1.41561 0.91612 1.44128 1.34133 1.01271 1.52355 1.20973 0.97895 0.86408 0.92485 1.22693 0.89478 0.99659 0.97043 1.62032 1.34471 1.05568 1.22487 1.22751 0.96625 0.91421 0.93335 0.92937 1.22725 0.98573 0.93790 1.01030 1.22239 0.92463 0.92611 0.94761 1.48235 1.41854 1.08365 1.34586 1.15990 0.81720 0.80226 0.81952 1.90862 1.32981 1.71349 1.43783 1.26172 0.99101 0.94939 0.99896 1.27746 0.99131 0.94218 0.93696 1.75088 1.08224 1.08495 1.15911 1.85103 1.48950 1.09893 1.44602 1.75496 1.12788 1.11915 1.03556 1.22393 0.99952 0.86696 0.91426 1.22926 0.98797 0.88743 0.98805 1.20874 0.89019 0.96544 0.88363 0.93599 0.95553 0.92527 0.91829 0.95212 0.88877 0.89716 0.90788 0.90487 0.75575 0.89296 0.89991 0.95575 0.91810 0.95481 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.15 55.49 0.62 -25.15 16 2 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.40 29.59 -169.99 -5.03 16.38 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.80 9.63 -15.06 -0.15 -6.95 16 8 H 0.07 1.75 7.88 -52.48 -0.41 1.34 16 9 N -0.60 -14.65 3.04 -172.01 -0.52 -15.17 16 10 C 0.15 3.06 6.69 -3.60 -0.02 3.03 16 11 C 0.04 0.68 5.48 -3.70 -0.02 0.66 16 12 N -0.52 -8.35 4.53 -223.79 -1.01 -9.36 16 13 C 0.07 0.87 2.71 -65.56 -0.18 0.69 16 14 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 15 C -0.12 -1.29 5.35 -24.90 -0.13 -1.42 16 16 C 0.10 0.98 5.60 -3.07 -0.02 0.96 16 17 N -0.60 -6.77 3.33 -171.47 -0.57 -7.34 16 18 C 0.62 7.30 7.87 -12.13 -0.10 7.21 16 19 O -0.52 -7.36 17.30 5.37 0.09 -7.27 16 20 C -0.04 -0.34 7.35 -80.07 -0.59 -0.93 16 21 C 0.04 0.29 12.63 -14.29 -0.18 0.11 16 22 N -0.35 -2.95 12.22 30.72 0.38 -2.58 16 23 O 0.34 2.90 11.65 27.26 0.32 3.22 16 24 N -0.32 -2.92 10.17 33.49 0.34 -2.58 16 25 C 0.12 1.42 5.32 -2.52 -0.01 1.41 16 26 C 0.04 0.65 5.48 -3.70 -0.02 0.63 16 27 C 0.18 4.11 5.42 -3.60 -0.02 4.09 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 31 H 0.06 0.92 6.79 -51.93 -0.35 0.57 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.81 7.93 -51.93 -0.41 0.39 16 35 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 36 H 0.08 0.69 7.86 -51.93 -0.41 0.29 16 37 H 0.23 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.03 7.73 -51.93 -0.40 0.62 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 1.00 6.87 -51.93 -0.36 0.65 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 2.30 6.12 -51.93 -0.32 1.98 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -30.36 349.00 -7.65 -38.01 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.99 Total: -2.85 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -1.52 Total: 9.43 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.77 Total: -62.18 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: 0.41 Total: -4.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.36 -7.65 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052099063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.597 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds