Wall clock time and date at job start Fri Apr 10 2020 18:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99971 * 2 1 4 4 H 1.48502 * 109.47048 * 270.00322 * 3 2 1 5 5 H 1.48494 * 109.47073 * 30.00536 * 3 2 1 6 6 H 1.48501 * 109.46804 * 150.00148 * 3 2 1 7 7 C 1.38814 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99769 * 197.00149 * 7 2 1 9 9 N 1.36933 * 120.00516 * 16.99366 * 7 2 1 10 10 C 1.47080 * 120.88558 * 206.58283 * 9 7 2 11 11 C 1.53237 * 108.52210 * 231.20948 * 10 9 7 12 12 N 1.46901 * 109.33678 * 306.16814 * 11 10 9 13 13 C 1.46903 * 111.00104 * 187.25628 * 12 11 10 14 14 H 1.08998 * 110.88267 * 297.57411 * 13 12 11 15 15 C 1.55152 * 111.00939 * 173.64829 * 13 12 11 16 16 C 1.54319 * 102.94293 * 206.42334 * 15 13 12 17 17 N 1.47019 * 107.27539 * 22.19209 * 16 15 13 18 18 C 1.34769 * 125.65106 * 181.32454 * 17 16 15 19 19 O 1.21499 * 120.00303 * 179.69067 * 18 17 16 20 20 C 1.48280 * 119.99992 * 359.68956 * 18 17 16 21 21 C 1.47483 * 128.71097 * 179.70045 * 20 18 17 22 22 N 1.30651 * 102.71545 * 179.90895 * 21 20 18 23 23 O 1.20837 * 109.61892 * 0.36598 * 22 21 20 24 24 N 1.20907 * 115.90530 * 359.73913 * 23 22 21 25 25 C 1.47432 * 108.69904 * 1.06018 * 17 16 15 26 26 C 1.46896 * 111.27288 * 63.10707 * 12 11 10 27 27 C 1.47082 * 120.87951 * 26.60573 * 9 7 2 28 28 H 0.96998 * 119.99862 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.62756 * 111.49510 * 10 9 7 30 30 H 1.09007 * 109.62366 * 350.91450 * 10 9 7 31 31 H 1.08994 * 109.49276 * 186.20825 * 11 10 9 32 32 H 1.08999 * 109.51577 * 66.13653 * 11 10 9 33 33 H 1.08999 * 110.71853 * 324.78703 * 15 13 12 34 34 H 1.08997 * 110.72034 * 87.87719 * 15 13 12 35 35 H 1.08998 * 109.88033 * 262.77001 * 16 15 13 36 36 H 1.09003 * 109.88239 * 141.61062 * 16 15 13 37 37 H 1.08001 * 128.64507 * 0.03557 * 21 20 18 38 38 H 1.08999 * 110.36610 * 94.71107 * 25 17 16 39 39 H 1.08998 * 110.36250 * 216.92286 * 25 17 16 40 40 H 1.08992 * 109.49463 * 56.85316 * 26 12 11 41 41 H 1.08992 * 109.49584 * 176.93645 * 26 12 11 42 42 H 1.09000 * 109.62945 * 248.50596 * 27 9 7 43 43 H 1.08999 * 109.62582 * 9.08273 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0549 -1.2228 0.2730 9 7 1.3705 -2.3621 -0.3476 10 6 1.8310 -3.6611 0.1659 11 6 2.0031 -4.6191 -1.0177 12 7 0.7557 -4.6642 -1.7923 13 6 0.8198 -5.6984 -2.8337 14 1 1.6112 -5.4795 -3.5504 15 6 -0.5493 -5.8556 -3.5465 16 6 -0.5153 -7.3167 -4.0419 17 7 0.4588 -8.0374 -3.2094 18 6 0.7973 -9.3351 -3.3418 19 8 1.6225 -9.8268 -2.5978 20 6 0.1627 -10.1631 -4.3956 21 6 0.3905 -11.5852 -4.7133 22 7 -0.4234 -11.7900 -5.7146 23 8 -1.0110 -10.7670 -5.9757 24 7 -0.7408 -9.8117 -5.2855 25 6 1.0088 -7.1036 -2.2098 26 6 0.4408 -3.3519 -2.3723 27 6 0.2048 -2.3419 -1.2443 28 1 -0.4850 0.8400 0.0004 29 1 1.0920 -4.0638 0.8586 30 1 2.7857 -3.5352 0.6768 31 1 2.2373 -5.6169 -0.6469 32 1 2.8146 -4.2682 -1.6552 33 1 -1.3692 -5.7055 -2.8441 34 1 -0.6296 -5.1631 -4.3844 35 1 -0.2047 -7.3468 -5.0862 36 1 -1.5016 -7.7680 -3.9332 37 1 1.0613 -12.2839 -4.2357 38 1 0.4554 -7.1807 -1.2738 39 1 2.0664 -7.3070 -2.0422 40 1 1.2739 -3.0182 -2.9908 41 1 -0.4580 -3.4307 -2.9839 42 1 -0.6905 -2.6178 -0.6872 43 1 0.0842 -1.3439 -1.6656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052099063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:18 Heat of formation + Delta-G solvation = 113.018986 kcal Electronic energy + Delta-G solvation = -27179.090668 eV Core-core repulsion = 23265.368175 eV Total energy + Delta-G solvation = -3913.722493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.99288 -41.42619 -39.90616 -38.24983 -36.07793 -35.68791 -35.51156 -33.42365 -31.85078 -31.69603 -29.91079 -28.17699 -26.81139 -25.40528 -24.79294 -24.48386 -23.46008 -21.73242 -21.10314 -20.80776 -20.11878 -19.18476 -18.85300 -18.62982 -17.69440 -17.03173 -16.83351 -16.19046 -15.86828 -15.65234 -15.53414 -15.28522 -15.22569 -14.95761 -14.66006 -14.14233 -14.01350 -13.85605 -13.70454 -13.35048 -13.05816 -12.98505 -12.68025 -12.54955 -12.54032 -12.44274 -12.17636 -12.01870 -11.94916 -11.86385 -11.83566 -11.70633 -11.44998 -11.35127 -10.58152 -9.96851 -9.33593 -8.67925 -7.87426 -5.31640 -0.40235 0.28963 1.27039 1.47102 1.48089 1.57015 1.68922 2.22825 2.44091 2.50947 2.75377 2.92731 3.27725 3.29123 3.56021 3.63921 3.69869 3.71217 4.02050 4.15782 4.22243 4.32622 4.36213 4.42134 4.51584 4.58068 4.62036 4.68910 4.72860 4.83415 4.88124 4.89295 4.99148 5.07159 5.17801 5.21109 5.38796 5.61999 5.71355 6.04756 6.14804 6.21938 6.38153 6.59638 7.14377 7.32513 7.84891 8.38279 9.19239 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.039252 B = 0.002399 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.166120 B =11668.526667 C =12133.650771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.144 3.856 11 C 0.053 3.947 12 N -0.526 5.526 13 C 0.071 3.929 14 H 0.056 0.944 15 C -0.117 4.117 16 C 0.108 3.892 17 N -0.599 5.599 18 C 0.618 3.382 19 O -0.545 6.545 20 C -0.051 4.051 21 C 0.054 3.946 22 N -0.361 5.361 23 O 0.345 5.655 24 N -0.316 5.316 25 C 0.122 3.878 26 C 0.055 3.945 27 C 0.184 3.816 28 H 0.250 0.750 29 H 0.017 0.983 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.255 0.745 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.020 0.980 41 H 0.090 0.910 42 H 0.000 1.000 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -20.950 -12.565 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.076 4.076 12 N -0.251 5.251 13 C -0.038 4.038 14 H 0.074 0.926 15 C -0.155 4.155 16 C -0.014 4.014 17 N -0.331 5.331 18 C 0.403 3.597 19 O -0.421 6.421 20 C -0.216 4.216 21 C -0.132 4.132 22 N -0.086 5.086 23 O 0.118 5.882 24 N -0.035 5.035 25 C 0.000 4.000 26 C -0.074 4.074 27 C 0.058 3.942 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.271 0.729 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.038 0.962 41 H 0.108 0.892 42 H 0.019 0.981 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.097 -21.123 -12.683 24.727 hybrid contribution 1.523 1.341 0.512 2.093 sum -0.574 -19.782 -12.171 23.234 Atomic orbital electron populations 1.70179 1.06530 1.25842 1.55495 1.25765 0.96092 1.01371 1.01386 0.85272 0.78039 0.79614 0.77549 1.21154 1.22170 1.19523 1.19515 0.92831 0.86018 1.40900 0.91642 1.44423 1.34311 1.02068 1.53121 1.21112 0.97454 0.85532 0.94023 1.22495 0.89664 0.99865 0.95595 1.61925 1.34136 1.05271 1.23758 1.22737 0.98229 0.90342 0.92483 0.92598 1.22716 0.96828 0.94782 1.01179 1.22278 0.92525 0.91703 0.94908 1.48280 1.41970 1.08369 1.34522 1.16165 0.81292 0.80248 0.81949 1.90844 1.34330 1.71932 1.45023 1.25950 0.99908 0.95709 1.00018 1.28197 0.98538 0.93609 0.92809 1.75117 1.08686 1.08357 1.16411 1.85106 1.48871 1.09859 1.44363 1.75469 1.12437 1.12223 1.03343 1.22239 0.99780 0.86552 0.91447 1.22572 0.99779 0.88473 0.96620 1.20651 0.87781 0.96464 0.89259 0.94049 0.96453 0.92327 0.89048 0.95681 0.89372 0.88211 0.89701 0.89614 0.72893 0.89913 0.90284 0.96193 0.89201 0.98146 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 11.15 21.65 0.24 -54.55 16 2 C -0.05 -2.82 4.94 84.86 0.42 -2.40 16 3 Si 0.97 44.56 29.59 68.60 2.03 46.58 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.26 -14.39 9.63 84.03 0.81 -13.58 16 8 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 9 N -0.62 -30.77 3.04 -698.11 -2.12 -32.89 16 10 C 0.14 5.93 6.69 86.35 0.58 6.51 16 11 C 0.05 1.72 5.48 86.38 0.47 2.19 16 12 N -0.53 -16.15 4.53 -861.95 -3.90 -20.05 16 13 C 0.07 1.65 2.71 46.30 0.13 1.78 16 14 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 15 C -0.12 -2.15 5.35 31.78 0.17 -1.98 16 16 C 0.11 1.79 5.60 86.73 0.49 2.27 16 17 N -0.60 -12.38 3.33 -814.72 -2.71 -15.09 16 18 C 0.62 13.56 7.87 86.92 0.68 14.25 16 19 O -0.54 -14.85 17.30 -3.71 -0.06 -14.91 16 20 C -0.05 -0.88 7.35 44.29 0.33 -0.56 16 21 C 0.05 0.69 12.63 87.31 1.10 1.79 16 22 N -0.36 -5.21 12.22 -61.41 -0.75 -5.96 16 23 O 0.34 5.16 11.65 140.85 1.64 6.80 16 24 N -0.32 -5.12 10.17 -52.06 -0.53 -5.64 16 25 C 0.12 2.74 5.32 86.85 0.46 3.20 16 26 C 0.05 1.92 5.48 86.38 0.47 2.39 16 27 C 0.18 8.71 5.42 86.35 0.47 9.18 16 28 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.06 2.33 7.95 -2.38 -0.02 2.31 16 31 H 0.09 2.47 6.79 -2.39 -0.02 2.45 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 1.57 7.93 -2.39 -0.02 1.55 16 35 H 0.08 1.27 7.75 -2.39 -0.02 1.25 16 36 H 0.09 1.31 7.86 -2.39 -0.02 1.30 16 37 H 0.26 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.84 7.73 -2.39 -0.02 1.82 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.09 2.68 6.87 -2.39 -0.02 2.66 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.06 3.06 6.12 -2.39 -0.01 3.05 16 Total: -1.00 -66.40 349.00 1.44 -64.96 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.03 Total: 5.70 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 6.58 Total: 25.05 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -9.77 Total: -134.19 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 1.58 Total: -8.11 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.40 1.44 -64.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052099063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.978 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds