Wall clock time and date at job start Fri Apr 10 2020 18:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33317 * 126.81230 * 2 1 4 4 N 1.28512 * 109.44207 * 180.02562 * 3 2 1 5 5 N 1.28714 * 110.63375 * 359.71156 * 4 3 2 6 6 H 0.97005 * 126.03704 * 180.29776 * 5 4 3 7 7 C 1.37003 * 126.81593 * 180.02562 * 2 1 3 8 8 C 1.47233 * 127.18972 * 359.97438 * 7 2 1 9 9 O 1.21623 * 119.99901 * 359.97438 * 8 7 2 10 10 N 1.34777 * 120.00130 * 179.97438 * 8 7 2 11 11 C 1.46498 * 119.99828 * 180.27637 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.09001 * 110.29215 * 307.13900 * 12 11 10 14 14 C 1.54549 * 110.33121 * 184.99781 * 12 11 10 15 15 C 1.54739 * 104.07557 * 217.46802 * 14 12 11 16 16 C 1.53472 * 103.72049 * 0.77272 * 15 14 12 17 17 C 1.52889 * 115.57364 * 252.69047 * 16 15 14 18 18 N 1.47782 * 85.77934 * 219.73030 * 17 16 15 19 19 C 1.36936 * 134.39941 * 203.85034 * 18 17 16 20 20 H 1.08007 * 120.00174 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00283 * 0.03129 * 19 18 17 22 22 N 1.31617 * 119.99663 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00165 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47376 * 60.00014 * 23 21 19 25 25 H 1.48498 * 109.47186 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47230 * 300.00355 * 23 21 19 27 27 C 1.47778 * 91.19731 * 23.87462 * 18 17 16 28 28 O 1.43242 * 106.25947 * 22.70090 * 16 15 14 29 29 H 1.08999 * 109.47250 * 269.98048 * 1 2 3 30 30 H 1.08999 * 109.47073 * 29.98277 * 1 2 3 31 31 H 1.08997 * 109.47240 * 149.98004 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 34 34 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 35 35 H 1.09004 * 110.51177 * 336.11929 * 14 12 11 36 36 H 1.09008 * 110.50980 * 98.68537 * 14 12 11 37 37 H 1.08999 * 110.57228 * 119.32484 * 15 14 12 38 38 H 1.08990 * 110.58117 * 242.06069 * 15 14 12 39 39 H 1.09000 * 113.82266 * 333.95024 * 17 16 15 40 40 H 1.09005 * 113.81874 * 105.51709 * 17 16 15 41 41 H 0.97001 * 119.99943 * 179.97438 * 22 21 19 42 42 H 1.09005 * 113.82280 * 221.90609 * 27 18 17 43 43 H 1.09001 * 113.93670 * 90.35204 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6837 -0.0005 5 7 3.6056 -0.6014 0.0052 6 1 4.4212 -1.1265 0.0101 7 6 2.3280 -1.0968 -0.0005 8 6 1.9223 -2.5121 -0.0006 9 8 0.7422 -2.8065 0.0002 10 7 2.8586 -3.4816 -0.0016 11 6 2.4549 -4.8898 -0.0079 12 6 3.7009 -5.7775 -0.0147 13 1 4.3654 -5.4901 -0.8296 14 6 3.3003 -7.2643 -0.1476 15 6 4.3075 -8.0081 0.7616 16 6 5.1735 -6.8823 1.3428 17 6 6.5953 -6.7900 0.7882 18 7 7.0006 -6.4891 2.1772 19 6 8.0641 -5.8402 2.7457 20 1 8.1314 -5.7521 3.8200 21 6 9.0556 -5.2955 1.9412 22 7 8.9732 -5.4023 0.6320 23 14 10.5059 -4.4098 2.7167 24 1 11.2395 -5.3457 3.6061 25 1 11.4170 -3.9235 1.6497 26 1 10.0138 -3.2555 3.5109 27 6 5.8003 -7.1686 2.7075 28 8 4.3897 -5.6866 1.2538 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 3.7998 -3.2468 -0.0027 33 1 1.8626 -5.1019 0.8823 34 1 1.8591 -5.0931 -0.8976 35 1 2.2807 -7.4182 0.2059 36 1 3.3991 -7.5955 -1.1814 37 1 3.7853 -8.5393 1.5574 38 1 4.9148 -8.6983 0.1763 39 1 6.9832 -7.7364 0.4115 40 1 6.7450 -5.9609 0.0965 41 1 9.6659 -5.0214 0.0697 42 1 5.3222 -6.6386 3.5314 43 1 5.9463 -8.2294 2.9111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053635876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:44 Heat of formation + Delta-G solvation = 71.601863 kcal Electronic energy + Delta-G solvation = -27196.807013 eV Core-core repulsion = 23281.288539 eV Total energy + Delta-G solvation = -3915.518474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.56748 -40.21139 -39.49914 -36.58324 -34.97844 -33.95685 -32.64803 -32.18989 -31.90558 -29.65646 -28.06227 -26.94557 -25.19228 -24.70585 -23.79992 -22.27581 -21.64615 -21.26440 -20.66120 -19.15261 -19.08078 -16.98698 -16.76847 -16.76070 -16.52877 -15.95163 -15.27583 -14.98121 -14.88969 -14.38434 -14.14064 -13.97227 -13.86655 -13.28547 -13.21347 -13.06998 -12.88855 -12.64356 -12.46978 -12.07580 -11.70280 -11.56806 -11.38289 -11.35982 -11.17092 -11.05140 -10.87435 -10.76294 -10.53258 -10.34701 -10.20228 -9.83834 -9.61796 -9.57877 -9.29422 -9.04137 -8.89005 -6.96425 -5.83807 -3.15438 0.66690 2.06350 2.23785 2.72838 2.83472 3.34754 3.39497 3.39943 3.89873 4.05142 4.35023 4.38347 4.55367 4.63067 4.74297 4.84523 4.99210 5.10774 5.13937 5.23577 5.42159 5.44270 5.46241 5.49423 5.50344 5.58864 5.68223 5.81590 5.90084 6.00452 6.07296 6.13951 6.16902 6.29653 6.37675 6.41483 6.52473 6.86730 7.08039 7.09153 7.38541 7.53897 7.75096 7.90164 8.06485 8.97338 9.63651 10.50481 11.33340 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.003762 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.798354 B = 7441.695126 C = 9540.096028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.059 3.941 3 N -0.273 5.273 4 N -0.041 5.041 5 N -0.370 5.370 6 H 0.455 0.545 7 C -0.072 4.072 8 C 0.597 3.403 9 O -0.518 6.518 10 N -0.716 5.716 11 C 0.130 3.870 12 C 0.058 3.942 13 H 0.076 0.924 14 C -0.142 4.142 15 C -0.140 4.140 16 C 0.057 3.943 17 C 0.153 3.847 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.924 5.924 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.129 3.871 28 O -0.334 6.334 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.404 0.596 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.253 0.747 42 H 0.051 0.949 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 0.825 -4.812 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 N -0.139 5.139 4 N -0.023 5.023 5 N -0.098 5.098 6 H 0.302 0.698 7 C -0.206 4.206 8 C 0.381 3.619 9 O -0.392 6.392 10 N -0.367 5.367 11 C 0.007 3.993 12 C 0.000 4.000 13 H 0.094 0.906 14 C -0.181 4.181 15 C -0.179 4.179 16 C 0.016 3.984 17 C 0.028 3.972 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.571 5.571 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.003 3.997 28 O -0.253 6.253 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.238 0.762 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.318 2.318 -4.647 16.174 hybrid contribution 1.683 -0.997 0.286 1.977 sum -13.635 1.320 -4.360 14.376 Atomic orbital electron populations 1.20310 0.84827 1.04337 1.03830 1.22334 0.98615 0.86950 1.00199 1.74957 0.95233 1.25987 1.17772 1.78225 1.15872 0.92301 1.15856 1.45564 1.09051 1.07031 1.48157 0.69753 1.22072 0.85120 0.96478 1.16967 1.16676 0.85927 0.82179 0.77129 1.90823 1.16407 1.81984 1.50018 1.45854 1.09663 1.06709 1.74487 1.21571 0.96169 0.78134 1.03376 1.23237 0.92715 0.94935 0.89145 0.90582 1.22868 1.00213 0.94020 1.00974 1.22732 0.97385 0.98641 0.99120 1.23748 0.92108 0.83091 0.99422 1.22584 0.85904 0.98947 0.89783 1.45879 1.23233 1.61976 1.02054 1.18974 0.97594 1.26870 0.91327 0.90298 1.24735 0.98749 1.01326 0.95497 1.69795 1.35094 1.49939 1.02279 0.86217 0.82188 0.79564 0.77909 1.21153 1.21525 1.21089 1.22512 0.87290 0.96079 0.93836 1.88991 1.60260 1.40894 1.35173 0.89938 0.90316 0.88782 0.76184 0.90014 0.89684 0.90647 0.90390 0.90827 0.90295 0.94751 0.90635 0.93670 0.93046 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 9.93 36.00 0.36 -0.36 16 2 C 0.06 0.74 7.29 -82.40 -0.60 0.14 16 3 N -0.27 -3.80 12.35 33.51 0.41 -3.38 16 4 N -0.04 -0.55 13.35 60.35 0.81 0.26 16 5 N -0.37 -4.09 6.97 33.31 0.23 -3.86 16 6 H 0.45 3.80 8.32 -190.33 -1.58 2.22 16 7 C -0.07 -0.86 7.17 -82.34 -0.59 -1.45 16 8 C 0.60 7.31 7.81 -12.61 -0.10 7.21 16 9 O -0.52 -7.30 14.99 5.26 0.08 -7.23 16 10 N -0.72 -7.98 5.55 -61.45 -0.34 -8.32 16 11 C 0.13 1.43 5.27 -4.04 -0.02 1.41 16 12 C 0.06 0.72 3.33 -25.92 -0.09 0.64 16 13 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.14 -1.52 6.65 -25.00 -0.17 -1.68 16 15 C -0.14 -1.82 6.49 -25.57 -0.17 -1.98 16 16 C 0.06 1.00 1.28 -90.66 -0.12 0.89 16 17 C 0.15 3.38 6.99 -3.40 -0.02 3.36 16 18 N -0.61 -15.07 3.71 -183.62 -0.68 -15.75 16 19 C -0.22 -6.06 10.70 -15.06 -0.16 -6.23 16 20 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -26.34 11.40 55.49 0.63 -25.71 16 23 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.13 2.55 8.47 -3.41 -0.03 2.52 16 28 O -0.33 -5.71 11.13 -35.23 -0.39 -6.10 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.93 6.62 -51.93 -0.34 0.59 16 32 H 0.40 4.20 7.74 -40.82 -0.32 3.89 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 39 H 0.03 0.77 7.96 -51.93 -0.41 0.35 16 40 H 0.08 1.84 7.20 -51.93 -0.37 1.47 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -33.61 360.13 -7.84 -41.45 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.19 Total: 2.36 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.80 Total: 4.16 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 1.06 Total: -56.77 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.31 Total: -13.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.61 -7.84 -41.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053635876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.053 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds