Wall clock time and date at job start Fri Apr 10 2020 18:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33317 * 126.81230 * 2 1 4 4 N 1.28512 * 109.44207 * 180.02562 * 3 2 1 5 5 N 1.28714 * 110.63375 * 359.71156 * 4 3 2 6 6 H 0.97005 * 126.03704 * 180.29776 * 5 4 3 7 7 C 1.37003 * 126.81593 * 180.02562 * 2 1 3 8 8 C 1.47233 * 127.18972 * 359.97438 * 7 2 1 9 9 O 1.21623 * 119.99901 * 359.97438 * 8 7 2 10 10 N 1.34777 * 120.00130 * 179.97438 * 8 7 2 11 11 C 1.46498 * 119.99828 * 180.27637 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.09001 * 110.29215 * 307.13900 * 12 11 10 14 14 C 1.54549 * 110.33121 * 184.99781 * 12 11 10 15 15 C 1.54739 * 104.07557 * 217.46802 * 14 12 11 16 16 C 1.53472 * 103.72049 * 0.77272 * 15 14 12 17 17 C 1.52889 * 115.57364 * 252.69047 * 16 15 14 18 18 N 1.47782 * 85.77934 * 219.73030 * 17 16 15 19 19 C 1.36936 * 134.39941 * 203.85034 * 18 17 16 20 20 H 1.08007 * 120.00174 * 180.02562 * 19 18 17 21 21 C 1.38815 * 120.00283 * 0.03129 * 19 18 17 22 22 N 1.31617 * 119.99663 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00165 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47376 * 60.00014 * 23 21 19 25 25 H 1.48498 * 109.47186 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47230 * 300.00355 * 23 21 19 27 27 C 1.47778 * 91.19731 * 23.87462 * 18 17 16 28 28 O 1.43242 * 106.25947 * 22.70090 * 16 15 14 29 29 H 1.08999 * 109.47250 * 269.98048 * 1 2 3 30 30 H 1.08999 * 109.47073 * 29.98277 * 1 2 3 31 31 H 1.08997 * 109.47240 * 149.98004 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 34 34 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 35 35 H 1.09004 * 110.51177 * 336.11929 * 14 12 11 36 36 H 1.09008 * 110.50980 * 98.68537 * 14 12 11 37 37 H 1.08999 * 110.57228 * 119.32484 * 15 14 12 38 38 H 1.08990 * 110.58117 * 242.06069 * 15 14 12 39 39 H 1.09000 * 113.82266 * 333.95024 * 17 16 15 40 40 H 1.09005 * 113.81874 * 105.51709 * 17 16 15 41 41 H 0.97001 * 119.99943 * 179.97438 * 22 21 19 42 42 H 1.09005 * 113.82280 * 221.90609 * 27 18 17 43 43 H 1.09001 * 113.93670 * 90.35204 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6837 -0.0005 5 7 3.6056 -0.6014 0.0052 6 1 4.4212 -1.1265 0.0101 7 6 2.3280 -1.0968 -0.0005 8 6 1.9223 -2.5121 -0.0006 9 8 0.7422 -2.8065 0.0002 10 7 2.8586 -3.4816 -0.0016 11 6 2.4549 -4.8898 -0.0079 12 6 3.7009 -5.7775 -0.0147 13 1 4.3654 -5.4901 -0.8296 14 6 3.3003 -7.2643 -0.1476 15 6 4.3075 -8.0081 0.7616 16 6 5.1735 -6.8823 1.3428 17 6 6.5953 -6.7900 0.7882 18 7 7.0006 -6.4891 2.1772 19 6 8.0641 -5.8402 2.7457 20 1 8.1314 -5.7521 3.8200 21 6 9.0556 -5.2955 1.9412 22 7 8.9732 -5.4023 0.6320 23 14 10.5059 -4.4098 2.7167 24 1 11.2395 -5.3457 3.6061 25 1 11.4170 -3.9235 1.6497 26 1 10.0138 -3.2555 3.5109 27 6 5.8003 -7.1686 2.7075 28 8 4.3897 -5.6866 1.2538 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 3.7998 -3.2468 -0.0027 33 1 1.8626 -5.1019 0.8823 34 1 1.8591 -5.0931 -0.8976 35 1 2.2807 -7.4182 0.2059 36 1 3.3991 -7.5955 -1.1814 37 1 3.7853 -8.5393 1.5574 38 1 4.9148 -8.6983 0.1763 39 1 6.9832 -7.7364 0.4115 40 1 6.7450 -5.9609 0.0965 41 1 9.6659 -5.0214 0.0697 42 1 5.3222 -6.6386 3.5314 43 1 5.9463 -8.2294 2.9111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053635876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:43 Heat of formation + Delta-G solvation = 45.569533 kcal Electronic energy + Delta-G solvation = -27197.935860 eV Core-core repulsion = 23281.288539 eV Total energy + Delta-G solvation = -3916.647321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.53420 -41.44054 -40.58380 -37.99611 -36.04933 -34.94582 -34.11463 -33.57532 -33.01684 -30.88753 -29.18805 -28.39460 -26.80606 -25.89076 -24.94403 -23.56429 -22.82721 -22.28014 -21.64389 -20.60412 -20.04178 -18.72413 -17.92439 -17.73519 -17.53570 -17.04654 -16.93701 -16.21140 -16.05988 -15.89882 -15.42546 -15.13053 -14.86649 -14.74707 -14.28650 -14.20754 -14.02660 -13.71092 -13.60885 -13.16434 -13.02088 -12.95575 -12.83884 -12.64361 -12.55420 -12.34228 -12.32468 -12.20531 -11.72485 -11.67051 -11.33413 -11.30180 -11.23800 -10.92024 -10.56876 -10.44229 -10.21655 -8.92732 -7.91750 -5.23694 -0.29286 1.07264 1.34447 1.43551 1.45427 1.51605 1.80622 1.87747 2.44992 2.74616 3.13760 3.27682 3.38703 3.45274 3.60521 3.69961 3.73193 3.87673 3.91783 4.05186 4.17422 4.44171 4.53925 4.57198 4.59801 4.73479 4.76597 4.80561 4.89655 4.93139 4.99952 5.05536 5.08219 5.11763 5.19326 5.24363 5.30362 5.41681 5.50447 5.52206 5.91692 6.15028 6.16840 6.79757 6.91338 7.08248 7.59080 8.54027 9.24410 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.003762 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.798354 B = 7441.695126 C = 9540.096028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.052 3.948 3 N -0.294 5.294 4 N -0.059 5.059 5 N -0.356 5.356 6 H 0.464 0.536 7 C -0.075 4.075 8 C 0.602 3.398 9 O -0.535 6.535 10 N -0.712 5.712 11 C 0.135 3.865 12 C 0.055 3.945 13 H 0.071 0.929 14 C -0.133 4.133 15 C -0.134 4.134 16 C 0.078 3.922 17 C 0.151 3.849 18 N -0.639 5.639 19 C -0.236 4.236 20 H 0.077 0.923 21 C -0.060 4.060 22 N -0.949 5.949 23 Si 0.973 3.027 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.124 3.876 28 O -0.360 6.360 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.406 0.594 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.029 0.971 40 H 0.043 0.957 41 H 0.248 0.752 42 H 0.049 0.951 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.977 -0.122 -4.884 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 N -0.160 5.160 4 N -0.040 5.040 5 N -0.086 5.086 6 H 0.314 0.686 7 C -0.210 4.210 8 C 0.386 3.614 9 O -0.411 6.411 10 N -0.363 5.363 11 C 0.013 3.987 12 C -0.003 4.003 13 H 0.089 0.911 14 C -0.171 4.171 15 C -0.172 4.172 16 C 0.037 3.963 17 C 0.025 3.975 18 N -0.365 5.365 19 C -0.364 4.364 20 H 0.095 0.905 21 C -0.254 4.254 22 N -0.598 5.598 23 Si 0.801 3.199 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.206 1.206 27 C -0.001 4.001 28 O -0.280 6.280 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.241 0.759 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.864 1.349 -4.707 17.560 hybrid contribution 2.144 -0.731 0.332 2.289 sum -14.719 0.618 -4.375 15.368 Atomic orbital electron populations 1.20391 0.83124 1.04967 1.04557 1.22818 0.99797 0.86635 0.99581 1.74936 0.95551 1.26830 1.18673 1.78177 1.16012 0.93123 1.16696 1.45555 1.09411 1.06576 1.47059 0.68579 1.22109 0.85294 0.96483 1.17100 1.16611 0.85716 0.82213 0.76852 1.90813 1.17044 1.82201 1.51067 1.45875 1.09690 1.06895 1.73858 1.21616 0.95427 0.77440 1.04252 1.23437 0.92821 0.96966 0.87081 0.91085 1.22893 1.00647 0.91641 1.01932 1.22707 0.97231 0.97178 1.00101 1.23298 0.90837 0.85242 0.96916 1.22546 0.89455 0.97208 0.88246 1.46280 1.23723 1.62605 1.03915 1.19329 0.98564 1.26906 0.91594 0.90476 1.25485 1.01258 1.02586 0.96027 1.69969 1.35575 1.51036 1.03254 0.85246 0.79137 0.78517 0.76991 1.20521 1.21806 1.20581 1.22739 0.85530 0.96611 0.95181 1.88964 1.60370 1.41123 1.37493 0.89065 0.88859 0.88915 0.75892 0.90381 0.87414 0.88291 0.88163 0.88864 0.89591 0.95339 0.93881 0.94295 0.93274 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 9.93 71.24 0.71 -0.60 16 2 C 0.05 1.27 7.29 42.04 0.31 1.57 16 3 N -0.29 -8.08 12.35 -47.89 -0.59 -8.67 16 4 N -0.06 -1.56 13.35 37.02 0.49 -1.07 16 5 N -0.36 -7.76 6.97 -48.52 -0.34 -8.09 16 6 H 0.46 7.68 8.32 -219.89 -1.83 5.85 16 7 C -0.08 -1.74 7.17 40.41 0.29 -1.45 16 8 C 0.60 13.98 7.81 86.61 0.68 14.65 16 9 O -0.54 -14.26 14.99 -4.10 -0.06 -14.32 16 10 N -0.71 -14.92 5.55 -466.57 -2.59 -17.51 16 11 C 0.14 2.64 5.27 86.38 0.46 3.09 16 12 C 0.05 1.25 3.33 31.12 0.10 1.35 16 13 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 14 C -0.13 -2.32 6.65 31.71 0.21 -2.11 16 15 C -0.13 -3.05 6.49 31.35 0.20 -2.84 16 16 C 0.08 2.64 1.28 -10.66 -0.01 2.63 16 17 C 0.15 6.74 6.99 86.10 0.60 7.34 16 18 N -0.64 -32.18 3.71 -741.14 -2.75 -34.92 16 19 C -0.24 -13.18 10.70 84.03 0.90 -12.28 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 22 N -0.95 -55.49 11.40 21.65 0.25 -55.24 16 23 Si 0.97 45.24 29.55 68.60 2.03 47.26 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 C 0.12 4.82 8.47 86.09 0.73 5.55 16 28 O -0.36 -11.90 11.13 -148.98 -1.66 -13.56 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.73 6.62 -2.39 -0.02 1.71 16 32 H 0.41 8.17 7.74 -92.71 -0.72 7.45 16 33 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 1.33 7.87 -2.38 -0.02 1.31 16 36 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.09 1.81 8.12 -2.39 -0.02 1.80 16 38 H 0.09 1.87 7.84 -2.39 -0.02 1.85 16 39 H 0.03 1.29 7.96 -2.39 -0.02 1.27 16 40 H 0.04 2.17 7.20 -2.38 -0.02 2.16 16 41 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -73.47 360.13 -1.06 -74.53 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -1.48 Total: 17.62 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.64 Total: 13.97 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.53 Total: -125.51 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.72 Total: -27.88 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.47 -1.06 -74.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053635876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.102 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds