Wall clock time and date at job start Fri Apr 10 2020 18:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36594 * 126.57861 * 2 1 4 4 C 1.47522 * 125.77138 * 0.02655 * 3 2 1 5 5 O 1.21592 * 120.00336 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99779 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00026 * 179.97438 * 6 4 3 8 8 H 1.09006 * 110.73040 * 36.95962 * 7 6 4 9 9 C 1.54475 * 110.82562 * 273.55407 * 7 6 4 10 10 O 1.43523 * 107.57388 * 220.41046 * 9 7 6 11 11 C 1.42557 * 109.63669 * 359.36308 * 10 9 7 12 12 C 1.52952 * 116.15592 * 253.33542 * 11 10 9 13 13 N 1.47776 * 85.80073 * 218.94085 * 12 11 10 14 14 C 1.36928 * 134.40811 * 203.93736 * 13 12 11 15 15 H 1.08004 * 119.99968 * 179.97438 * 14 13 12 16 16 C 1.38815 * 120.00482 * 359.97438 * 14 13 12 17 17 N 1.31619 * 119.99596 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00330 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47402 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47210 * 120.00171 * 18 16 14 21 21 H 1.48504 * 109.46955 * 240.00126 * 18 16 14 22 22 C 1.47771 * 91.18031 * 23.92035 * 13 12 11 23 23 C 1.54002 * 106.48829 * 23.03810 * 11 10 9 24 24 N 1.34409 * 108.45658 * 179.86972 * 3 2 1 25 25 N 1.28762 * 109.51903 * 0.40666 * 24 3 2 26 26 N 1.34809 * 126.57904 * 180.31760 * 2 1 3 27 27 C 1.46506 * 126.59604 * 359.94245 * 26 2 1 28 28 H 1.09002 * 109.47152 * 269.70782 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.70883 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.70863 * 1 2 3 31 31 H 0.96999 * 119.99761 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.82794 * 339.91725 * 9 7 6 33 33 H 1.08994 * 109.83074 * 100.80881 * 9 7 6 34 34 H 1.08993 * 113.82061 * 333.16432 * 12 11 10 35 35 H 1.09005 * 113.81757 * 104.72247 * 12 11 10 36 36 H 0.97005 * 120.00398 * 179.97438 * 17 16 14 37 37 H 1.08998 * 113.82125 * 221.84960 * 22 13 12 38 38 H 1.09010 * 113.92551 * 90.31114 * 22 13 12 39 39 H 1.08999 * 111.15818 * 206.96209 * 23 11 10 40 40 H 1.08999 * 111.15452 * 82.71593 * 23 11 10 41 41 H 1.08994 * 109.47239 * 89.99866 * 27 26 2 42 42 H 1.09000 * 109.46835 * 209.99920 * 27 26 2 43 43 H 1.09000 * 109.46718 * 329.99977 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0006 5 8 0.6860 2.7628 0.0006 6 7 2.7817 3.4987 0.0010 7 6 2.3376 4.8948 0.0010 8 1 1.4441 5.0154 0.6136 9 6 2.0864 5.3912 -1.4401 10 8 2.5861 6.7336 -1.5293 11 6 3.1166 7.1322 -0.2676 12 6 2.2805 8.1350 0.5290 13 7 3.5712 8.7513 0.9002 14 6 3.9963 9.5304 1.9429 15 1 5.0233 9.8621 1.9856 16 6 3.1074 9.8940 2.9453 17 7 1.8558 9.4902 2.8930 18 14 3.6876 10.9562 4.3681 19 1 5.1278 11.2735 4.1939 20 1 2.9025 12.2165 4.3972 21 1 3.4937 10.2226 5.6446 22 6 4.2199 8.1906 -0.3032 23 6 3.4760 5.8371 0.4842 24 7 3.5984 0.6788 0.0029 25 7 3.6299 -0.6084 -0.0039 26 7 2.3104 -1.0825 -0.0060 27 6 1.8863 -2.4849 -0.0126 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5184 30 1 -0.3633 0.8926 -0.5093 31 1 3.7293 3.2912 0.0006 32 1 2.6139 4.7524 -2.1484 33 1 1.0179 5.3778 -1.6548 34 1 1.6500 8.7728 -0.0904 35 1 1.7458 7.6928 1.3698 36 1 1.2346 9.7439 3.5936 37 1 5.2180 7.7924 -0.1203 38 1 4.1752 8.8440 -1.1747 39 1 3.4335 5.9840 1.5634 40 1 4.4529 5.4628 0.1782 41 1 1.7803 -2.8276 -1.0418 42 1 2.6335 -3.0927 0.4976 43 1 0.9297 -2.5775 0.5016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053768513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:50 Heat of formation + Delta-G solvation = 80.998704 kcal Electronic energy + Delta-G solvation = -26968.758107 eV Core-core repulsion = 23053.647111 eV Total energy + Delta-G solvation = -3915.110997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54919 -40.16171 -38.96850 -36.22945 -35.33745 -34.42812 -32.63836 -32.05410 -30.44932 -28.48893 -27.88808 -27.77507 -25.75710 -24.88755 -23.92464 -22.03292 -21.84465 -20.95175 -20.51524 -18.69898 -18.27656 -16.78365 -16.74674 -16.41467 -16.25407 -15.39055 -15.11116 -14.78023 -14.65192 -14.58654 -14.44848 -13.83612 -13.71763 -13.68431 -13.42425 -13.29316 -12.94891 -12.81238 -12.56388 -12.22605 -11.93289 -11.61830 -11.47377 -11.35045 -11.06554 -10.88752 -10.80220 -10.70282 -10.55172 -10.26210 -10.11712 -9.95167 -9.53313 -9.45970 -9.01367 -8.78899 -8.69515 -6.88523 -5.75726 -3.08582 0.80944 1.48276 1.67873 3.01997 3.15156 3.40461 3.45638 3.48428 3.88613 3.96649 4.23525 4.27347 4.43792 4.47605 4.53264 4.70824 4.75412 4.94387 5.09252 5.18612 5.26358 5.29036 5.30567 5.38478 5.43160 5.46486 5.57693 5.64209 5.97708 6.02173 6.05689 6.19541 6.37013 6.42203 6.50857 6.62946 6.74328 7.06960 7.25083 7.37135 7.53885 7.70087 7.75002 7.97963 8.10474 9.05215 9.71027 10.59137 11.41448 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.002623 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.803715 B =10674.134193 C =11016.569011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.125 3.875 3 C -0.105 4.105 4 C 0.606 3.394 5 O -0.533 6.533 6 N -0.701 5.701 7 C 0.113 3.887 8 H 0.109 0.891 9 C 0.046 3.954 10 O -0.369 6.369 11 C 0.056 3.944 12 C 0.157 3.843 13 N -0.605 5.605 14 C -0.220 4.220 15 H 0.082 0.918 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.913 3.087 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.129 3.871 23 C -0.122 4.122 24 N -0.201 5.201 25 N -0.068 5.068 26 N -0.367 5.367 27 C 0.087 3.913 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.409 0.591 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -25.207 -7.254 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.013 4.013 3 C -0.245 4.245 4 C 0.390 3.610 5 O -0.410 6.410 6 N -0.352 5.352 7 C 0.008 3.992 8 H 0.127 0.873 9 C -0.032 4.032 10 O -0.286 6.286 11 C 0.016 3.984 12 C 0.032 3.968 13 N -0.334 5.334 14 C -0.347 4.347 15 H 0.100 0.900 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.003 3.997 23 C -0.160 4.160 24 N -0.074 5.074 25 N -0.048 5.048 26 N -0.152 5.152 27 C -0.054 4.054 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.245 0.755 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.850 -25.144 -7.142 26.204 hybrid contribution -0.274 0.400 0.894 1.017 sum -2.123 -24.744 -6.248 25.609 Atomic orbital electron populations 1.20751 0.84497 1.05557 1.04794 1.21948 0.96308 0.86282 0.96757 1.21210 0.89040 0.95424 1.18781 1.16713 0.85640 0.82436 0.76175 1.90783 1.15792 1.83504 1.50871 1.45723 1.10208 1.05314 1.73973 1.22701 0.99659 0.79363 0.97431 0.87298 1.23452 0.99460 0.84541 0.95775 1.88308 1.79243 1.28347 1.32721 1.24180 0.97538 0.93796 0.82909 1.22556 0.89695 0.89845 0.94742 1.45731 1.06897 1.60246 1.20498 1.19015 0.95030 1.23682 0.97020 0.90020 1.24801 0.95642 1.00980 0.99032 1.69834 1.03120 1.49149 1.34492 0.86037 0.77736 0.79805 0.82123 1.20439 1.21732 1.21715 1.22555 0.94606 0.91711 0.90830 1.22973 0.97023 0.93093 1.02865 1.74604 1.19061 1.04187 1.09599 1.81999 0.95959 1.03413 1.23420 1.50282 1.06484 1.07800 1.50681 1.22171 1.02504 0.76014 1.04715 0.88871 0.90655 0.86727 0.75493 0.91756 0.91003 0.94668 0.90565 0.93627 0.93242 0.93861 0.88149 0.90315 0.89241 0.87993 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 9.39 36.01 0.34 -0.30 16 2 C 0.12 1.20 7.02 -81.88 -0.57 0.63 16 3 C -0.11 -1.31 6.99 -83.55 -0.58 -1.89 16 4 C 0.61 8.40 7.81 -12.47 -0.10 8.30 16 5 O -0.53 -8.28 14.44 5.28 0.08 -8.20 16 6 N -0.70 -9.40 5.14 -52.82 -0.27 -9.67 16 7 C 0.11 1.74 3.29 -65.84 -0.22 1.52 16 8 H 0.11 1.83 7.71 -51.93 -0.40 1.43 16 9 C 0.05 0.72 7.57 37.93 0.29 1.01 16 10 O -0.37 -6.98 11.17 -35.23 -0.39 -7.37 16 11 C 0.06 1.12 1.47 -90.31 -0.13 0.99 16 12 C 0.16 3.83 6.99 -3.37 -0.02 3.81 16 13 N -0.61 -15.71 3.69 -183.22 -0.68 -16.38 16 14 C -0.22 -6.17 10.70 -15.06 -0.16 -6.34 16 15 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.92 -27.30 11.40 55.49 0.63 -26.67 16 18 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.13 2.76 8.49 -3.38 -0.03 2.73 16 23 C -0.12 -2.05 6.02 -24.89 -0.15 -2.20 16 24 N -0.20 -2.63 12.04 32.85 0.40 -2.23 16 25 N -0.07 -0.81 13.78 60.35 0.83 0.02 16 26 N -0.37 -3.12 4.03 -63.59 -0.26 -3.38 16 27 C 0.09 0.26 11.18 59.85 0.67 0.93 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.26 7.82 -51.93 -0.41 -0.14 16 30 H 0.11 0.98 6.41 -51.93 -0.33 0.64 16 31 H 0.41 4.95 8.19 -40.82 -0.33 4.62 16 32 H 0.06 0.92 8.02 -51.93 -0.42 0.51 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.99 7.16 -51.93 -0.37 1.62 16 36 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 38 H 0.04 0.93 8.14 -51.92 -0.42 0.50 16 39 H 0.10 1.89 8.05 -51.93 -0.42 1.47 16 40 H 0.08 1.17 7.98 -51.93 -0.41 0.75 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 0.07 7.76 -51.93 -0.40 -0.33 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -34.78 361.19 -6.01 -40.79 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.00 Total: 1.60 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.77 Total: 8.86 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.66 Total: -58.30 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.32 Total: -15.57 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.78 -6.01 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053768513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.792 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds