Wall clock time and date at job start Fri Apr 10 2020 18:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36594 * 126.57861 * 2 1 4 4 C 1.47522 * 125.77138 * 0.02655 * 3 2 1 5 5 O 1.21592 * 120.00336 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99779 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00026 * 179.97438 * 6 4 3 8 8 H 1.09006 * 110.73040 * 36.95962 * 7 6 4 9 9 C 1.54475 * 110.82562 * 273.55407 * 7 6 4 10 10 O 1.43523 * 107.57388 * 220.41046 * 9 7 6 11 11 C 1.42557 * 109.63669 * 359.36308 * 10 9 7 12 12 C 1.52952 * 116.15592 * 253.33542 * 11 10 9 13 13 N 1.47776 * 85.80073 * 218.94085 * 12 11 10 14 14 C 1.36928 * 134.40811 * 203.93736 * 13 12 11 15 15 H 1.08004 * 119.99968 * 179.97438 * 14 13 12 16 16 C 1.38815 * 120.00482 * 359.97438 * 14 13 12 17 17 N 1.31619 * 119.99596 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00330 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47402 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47210 * 120.00171 * 18 16 14 21 21 H 1.48504 * 109.46955 * 240.00126 * 18 16 14 22 22 C 1.47771 * 91.18031 * 23.92035 * 13 12 11 23 23 C 1.54002 * 106.48829 * 23.03810 * 11 10 9 24 24 N 1.34409 * 108.45658 * 179.86972 * 3 2 1 25 25 N 1.28762 * 109.51903 * 0.40666 * 24 3 2 26 26 N 1.34809 * 126.57904 * 180.31760 * 2 1 3 27 27 C 1.46506 * 126.59604 * 359.94245 * 26 2 1 28 28 H 1.09002 * 109.47152 * 269.70782 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.70883 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.70863 * 1 2 3 31 31 H 0.96999 * 119.99761 * 0.02562 * 6 4 3 32 32 H 1.08998 * 109.82794 * 339.91725 * 9 7 6 33 33 H 1.08994 * 109.83074 * 100.80881 * 9 7 6 34 34 H 1.08993 * 113.82061 * 333.16432 * 12 11 10 35 35 H 1.09005 * 113.81757 * 104.72247 * 12 11 10 36 36 H 0.97005 * 120.00398 * 179.97438 * 17 16 14 37 37 H 1.08998 * 113.82125 * 221.84960 * 22 13 12 38 38 H 1.09010 * 113.92551 * 90.31114 * 22 13 12 39 39 H 1.08999 * 111.15818 * 206.96209 * 23 11 10 40 40 H 1.08999 * 111.15452 * 82.71593 * 23 11 10 41 41 H 1.08994 * 109.47239 * 89.99866 * 27 26 2 42 42 H 1.09000 * 109.46835 * 209.99920 * 27 26 2 43 43 H 1.09000 * 109.46718 * 329.99977 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0006 5 8 0.6860 2.7628 0.0006 6 7 2.7817 3.4987 0.0010 7 6 2.3376 4.8948 0.0010 8 1 1.4441 5.0154 0.6136 9 6 2.0864 5.3912 -1.4401 10 8 2.5861 6.7336 -1.5293 11 6 3.1166 7.1322 -0.2676 12 6 2.2805 8.1350 0.5290 13 7 3.5712 8.7513 0.9002 14 6 3.9963 9.5304 1.9429 15 1 5.0233 9.8621 1.9856 16 6 3.1074 9.8940 2.9453 17 7 1.8558 9.4902 2.8930 18 14 3.6876 10.9562 4.3681 19 1 5.1278 11.2735 4.1939 20 1 2.9025 12.2165 4.3972 21 1 3.4937 10.2226 5.6446 22 6 4.2199 8.1906 -0.3032 23 6 3.4760 5.8371 0.4842 24 7 3.5984 0.6788 0.0029 25 7 3.6299 -0.6084 -0.0039 26 7 2.3104 -1.0825 -0.0060 27 6 1.8863 -2.4849 -0.0126 28 1 -0.3633 -0.0052 1.0277 29 1 -0.3633 -0.8874 -0.5184 30 1 -0.3633 0.8926 -0.5093 31 1 3.7293 3.2912 0.0006 32 1 2.6139 4.7524 -2.1484 33 1 1.0179 5.3778 -1.6548 34 1 1.6500 8.7728 -0.0904 35 1 1.7458 7.6928 1.3698 36 1 1.2346 9.7439 3.5936 37 1 5.2180 7.7924 -0.1203 38 1 4.1752 8.8440 -1.1747 39 1 3.4335 5.9840 1.5634 40 1 4.4529 5.4628 0.1782 41 1 1.7803 -2.8276 -1.0418 42 1 2.6335 -3.0927 0.4976 43 1 0.9297 -2.5775 0.5016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053768513.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:50 Heat of formation + Delta-G solvation = 53.992456 kcal Electronic energy + Delta-G solvation = -26969.929186 eV Core-core repulsion = 23053.647111 eV Total energy + Delta-G solvation = -3916.282075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.33009 -41.60703 -40.23253 -37.89629 -36.11192 -35.57231 -34.12945 -33.35809 -31.70103 -29.98196 -28.87501 -28.33245 -27.48549 -26.71994 -24.89297 -23.89215 -22.83728 -21.85123 -21.59617 -20.34165 -19.20624 -18.75105 -17.75107 -17.42852 -17.26084 -16.89857 -16.53865 -16.38421 -15.89231 -15.69849 -15.56677 -15.24769 -14.77280 -14.41912 -14.31464 -14.20511 -14.10668 -13.95876 -13.67603 -13.40966 -13.27850 -12.98675 -12.87709 -12.83759 -12.67277 -12.59161 -12.37378 -12.21220 -11.95005 -11.76269 -11.49188 -11.23167 -11.14383 -10.87601 -10.40301 -10.32023 -10.07542 -8.96897 -7.90733 -5.25791 0.08625 0.54582 1.10845 1.47010 1.48232 1.58664 1.94538 2.14197 2.44386 2.84255 3.11866 3.20909 3.34256 3.41090 3.54604 3.61297 3.69719 3.73301 3.78754 4.04937 4.05327 4.34333 4.40379 4.60168 4.64687 4.66229 4.67479 4.70156 4.75565 4.80405 4.83695 4.86187 4.93223 5.02376 5.09694 5.16157 5.22117 5.35521 5.49596 5.51283 5.87344 6.16545 6.33399 6.85058 6.89650 7.05773 7.58532 8.52368 9.26497 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.002623 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.803715 B =10674.134193 C =11016.569011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.134 3.866 3 C -0.133 4.133 4 C 0.607 3.393 5 O -0.555 6.555 6 N -0.695 5.695 7 C 0.127 3.873 8 H 0.090 0.910 9 C 0.046 3.954 10 O -0.377 6.377 11 C 0.078 3.922 12 C 0.153 3.847 13 N -0.630 5.630 14 C -0.231 4.231 15 H 0.090 0.910 16 C -0.068 4.068 17 N -0.953 5.953 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.294 1.294 21 H -0.291 1.291 22 C 0.129 3.871 23 C -0.112 4.112 24 N -0.222 5.222 25 N -0.092 5.092 26 N -0.353 5.353 27 C 0.072 3.928 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.417 0.583 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.011 0.989 35 H 0.049 0.951 36 H 0.249 0.751 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -27.603 -7.702 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.005 4.005 3 C -0.273 4.273 4 C 0.392 3.608 5 O -0.433 6.433 6 N -0.346 5.346 7 C 0.021 3.979 8 H 0.108 0.892 9 C -0.032 4.032 10 O -0.295 6.295 11 C 0.037 3.963 12 C 0.027 3.973 13 N -0.358 5.358 14 C -0.359 4.359 15 H 0.108 0.892 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.810 3.190 19 H -0.187 1.187 20 H -0.222 1.222 21 H -0.218 1.218 22 C 0.004 3.996 23 C -0.150 4.150 24 N -0.095 5.095 25 N -0.071 5.071 26 N -0.139 5.139 27 C -0.067 4.067 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.255 0.745 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.144 -27.591 -7.621 28.647 hybrid contribution -0.547 1.015 0.958 1.499 sum -1.691 -26.575 -6.664 27.450 Atomic orbital electron populations 1.20850 0.82282 1.06453 1.05705 1.22344 0.97445 0.85786 0.94951 1.21150 0.89727 0.95224 1.21206 1.16923 0.85286 0.83111 0.75443 1.90771 1.16613 1.83994 1.51878 1.45582 1.10685 1.04327 1.74053 1.22349 0.98347 0.80377 0.96810 0.89204 1.23599 0.99910 0.83292 0.96385 1.88289 1.79305 1.30185 1.31737 1.23692 0.95248 0.94151 0.83184 1.22441 0.89565 0.91015 0.94307 1.46034 1.08015 1.60219 1.21574 1.19433 0.95460 1.23335 0.97628 0.89244 1.25679 0.95845 1.02709 1.01820 1.70032 1.04266 1.50628 1.35251 0.84965 0.77954 0.77548 0.78570 1.18667 1.22152 1.21789 1.22693 0.95977 0.91755 0.89135 1.22855 0.99005 0.91914 1.01177 1.74561 1.19618 1.04925 1.10412 1.81892 0.97950 1.03038 1.24265 1.50617 1.05195 1.09400 1.48674 1.22732 1.04170 0.73092 1.06711 0.87791 0.86811 0.88698 0.74542 0.89487 0.90776 0.97098 0.93230 0.94227 0.90715 0.93555 0.90241 0.87354 0.87165 0.87060 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.39 71.24 0.67 -0.34 16 2 C 0.13 2.33 7.02 41.72 0.29 2.62 16 3 C -0.13 -3.21 6.99 40.81 0.29 -2.92 16 4 C 0.61 16.60 7.81 86.69 0.68 17.28 16 5 O -0.55 -17.22 14.44 -4.01 -0.06 -17.28 16 6 N -0.69 -18.21 5.14 -439.29 -2.26 -20.46 16 7 C 0.13 3.87 3.29 46.35 0.15 4.02 16 8 H 0.09 3.12 7.71 -2.38 -0.02 3.11 16 9 C 0.05 1.40 7.57 72.48 0.55 1.95 16 10 O -0.38 -14.01 11.17 -148.98 -1.66 -15.68 16 11 C 0.08 3.11 1.47 -10.44 -0.02 3.09 16 12 C 0.15 7.73 6.99 86.12 0.60 8.34 16 13 N -0.63 -33.17 3.69 -739.72 -2.73 -35.90 16 14 C -0.23 -13.04 10.70 84.04 0.90 -12.14 16 15 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 16 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 17 N -0.95 -58.51 11.40 21.65 0.25 -58.26 16 18 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 C 0.13 5.44 8.49 86.11 0.73 6.17 16 23 C -0.11 -3.71 6.02 31.79 0.19 -3.52 16 24 N -0.22 -5.66 12.04 -49.99 -0.60 -6.26 16 25 N -0.09 -2.06 13.78 37.02 0.51 -1.55 16 26 N -0.35 -5.18 4.03 -355.09 -1.43 -6.61 16 27 C 0.07 0.18 11.18 127.77 1.43 1.61 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.11 0.32 7.82 -2.39 -0.02 0.30 16 30 H 0.09 1.49 6.41 -2.38 -0.02 1.48 16 31 H 0.42 9.67 8.19 -92.71 -0.76 8.91 16 32 H 0.09 2.31 8.02 -2.39 -0.02 2.29 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 2.75 7.16 -2.38 -0.02 2.73 16 36 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 37 H 0.07 2.78 8.11 -2.39 -0.02 2.76 16 38 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.08 3.03 8.05 -2.39 -0.02 3.01 16 40 H 0.11 2.97 7.98 -2.39 -0.02 2.96 16 41 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 42 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.13 -0.39 7.76 -2.39 -0.02 -0.41 16 Total: -1.00 -77.71 361.19 1.26 -76.45 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.29 Total: 14.64 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 6.93 Total: 22.72 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -6.26 Total: -129.05 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.72 Total: -32.95 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -77.71 1.26 -76.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053768513.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.439 kcal (2) G-P(sol) polarization free energy of solvation -77.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds