Wall clock time and date at job start Fri Apr 10 2020 18:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36600 * 126.57919 * 2 1 4 4 C 1.47522 * 125.77037 * 0.04481 * 3 2 1 5 5 O 1.21598 * 120.00041 * 359.70906 * 4 3 2 6 6 N 1.34776 * 120.00292 * 179.71514 * 4 3 2 7 7 C 1.46498 * 120.00239 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.76899 * 328.53342 * 7 6 4 9 9 C 1.55056 * 110.86715 * 92.28973 * 7 6 4 10 10 O 1.44608 * 103.66846 * 81.64347 * 9 7 6 11 11 C 1.42834 * 106.73394 * 39.08740 * 10 9 7 12 12 C 1.52650 * 115.96348 * 202.47035 * 11 10 9 13 13 N 1.47224 * 87.78301 * 218.41065 * 12 11 10 14 14 C 1.36935 * 135.96655 * 206.38126 * 13 12 11 15 15 H 1.07995 * 120.00083 * 6.48200 * 14 13 12 16 16 C 1.38817 * 119.99741 * 186.48533 * 14 13 12 17 17 N 1.31620 * 119.99762 * 6.40711 * 16 14 13 18 18 Si 1.86796 * 119.99659 * 186.41024 * 16 14 13 19 19 H 1.48494 * 109.47314 * 84.99017 * 18 16 14 20 20 H 1.48503 * 109.47018 * 204.98577 * 18 16 14 21 21 H 1.48499 * 109.47419 * 324.98234 * 18 16 14 22 22 C 1.47225 * 88.06172 * 26.63735 * 13 12 11 23 23 C 1.53318 * 108.32839 * 334.30342 * 11 10 9 24 24 N 1.34401 * 108.45847 * 179.77419 * 3 2 1 25 25 N 1.28765 * 109.52278 * 0.23321 * 24 3 2 26 26 N 1.34815 * 126.58178 * 180.17158 * 2 1 3 27 27 C 1.46499 * 126.59589 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47523 * 89.99937 * 1 2 3 29 29 H 1.09006 * 109.47282 * 209.99710 * 1 2 3 30 30 H 1.09000 * 109.47534 * 329.99543 * 1 2 3 31 31 H 0.97002 * 119.99668 * 0.02562 * 6 4 3 32 32 H 1.09007 * 110.58732 * 200.18865 * 9 7 6 33 33 H 1.09003 * 110.58606 * 322.94462 * 9 7 6 34 34 H 1.09000 * 113.49520 * 103.68213 * 12 11 10 35 35 H 1.08995 * 113.56307 * 333.15030 * 12 11 10 36 36 H 0.97006 * 119.99259 * 180.02562 * 17 16 14 37 37 H 1.08999 * 113.49998 * 88.09597 * 22 13 12 38 38 H 1.08998 * 113.49567 * 218.64000 * 22 13 12 39 39 H 1.09001 * 110.56290 * 120.19416 * 23 11 10 40 40 H 1.09001 * 110.56534 * 243.04368 * 23 11 10 41 41 H 1.09002 * 109.47229 * 270.24740 * 27 26 2 42 42 H 1.09006 * 109.46802 * 30.24606 * 27 26 2 43 43 H 1.09001 * 109.47033 * 150.24381 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6858 2.7628 -0.0035 6 7 2.7815 3.4988 0.0066 7 6 2.3373 4.8948 0.0070 8 1 1.3941 5.0005 -0.5290 9 6 2.2186 5.4363 1.4551 10 8 3.5766 5.7958 1.7979 11 6 4.1564 6.3753 0.6282 12 6 5.6808 6.3470 0.5537 13 7 5.6194 7.6899 -0.0466 14 6 6.4070 8.4290 -0.8883 15 1 7.2746 7.9802 -1.3490 16 6 6.0904 9.7551 -1.1493 17 7 5.1101 10.3390 -0.4932 18 14 7.0555 10.7108 -2.4317 19 1 6.4787 10.4567 -3.7762 20 1 6.9806 12.1623 -2.1273 21 1 8.4744 10.2733 -2.4110 22 6 4.3435 7.8926 0.6596 23 6 3.4236 5.8202 -0.5988 24 7 3.5983 0.6789 0.0050 25 7 3.6298 -0.6083 0.0032 26 7 2.3104 -1.0826 -0.0032 27 6 1.8864 -2.4849 -0.0069 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.7291 3.2914 0.0097 32 1 1.5710 6.3126 1.4847 33 1 1.8441 4.6617 2.1244 34 1 6.0688 5.5857 -0.1231 35 1 6.1645 6.3292 1.5303 36 1 4.8886 11.2656 -0.6759 37 1 4.4627 8.2952 1.6654 38 1 3.6032 8.4355 0.0720 39 1 2.9641 6.6281 -1.1683 40 1 4.1069 5.2484 -1.2266 41 1 1.7774 -2.8342 1.0198 42 1 0.9312 -2.5743 -0.5245 43 1 2.6351 -3.0894 -0.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053768514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:53 Heat of formation + Delta-G solvation = 83.439818 kcal Electronic energy + Delta-G solvation = -27068.902563 eV Core-core repulsion = 23153.897421 eV Total energy + Delta-G solvation = -3915.005142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52045 -40.23640 -38.94622 -36.34011 -35.30490 -34.22717 -32.62691 -32.09166 -30.53850 -28.46460 -27.91002 -27.79472 -25.77447 -24.72047 -23.91464 -22.13304 -21.79552 -20.92679 -20.45064 -18.77075 -18.24911 -16.84699 -16.72665 -16.45785 -16.19176 -15.27931 -15.07295 -14.97940 -14.73791 -14.52054 -14.13145 -13.97095 -13.70686 -13.65370 -13.54357 -13.40716 -12.94743 -12.79193 -12.39240 -12.19840 -12.05847 -11.45895 -11.38958 -11.30858 -11.02154 -10.89648 -10.77312 -10.67569 -10.58751 -10.52376 -10.08799 -10.04276 -9.51593 -9.43752 -9.08365 -8.77748 -8.56859 -6.89880 -5.78702 -3.10154 0.82966 1.51511 1.70506 3.07523 3.16832 3.40110 3.44529 3.46683 3.90705 3.98778 4.24973 4.27116 4.47139 4.48995 4.52657 4.74941 4.78531 4.95765 5.07705 5.09586 5.23677 5.29410 5.30770 5.38381 5.43548 5.55905 5.61507 5.64785 5.88549 5.94037 6.06929 6.19970 6.31620 6.45785 6.55538 6.63875 6.67995 7.00594 7.18456 7.41804 7.49187 7.66427 7.74683 7.95298 8.12241 9.02679 9.68846 10.62872 11.40030 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.002617 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.340961 B =10698.472942 C =11129.306177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.123 3.877 3 C -0.105 4.105 4 C 0.607 3.393 5 O -0.542 6.542 6 N -0.696 5.696 7 C 0.108 3.892 8 H 0.108 0.892 9 C 0.041 3.959 10 O -0.361 6.361 11 C 0.042 3.958 12 C 0.127 3.873 13 N -0.602 5.602 14 C -0.217 4.217 15 H 0.083 0.917 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.914 3.086 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.155 3.845 23 C -0.115 4.115 24 N -0.198 5.198 25 N -0.067 5.067 26 N -0.367 5.367 27 C 0.087 3.913 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.412 0.588 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.255 0.745 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 -25.018 1.075 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.015 4.015 3 C -0.244 4.244 4 C 0.391 3.609 5 O -0.419 6.419 6 N -0.346 5.346 7 C 0.003 3.997 8 H 0.126 0.874 9 C -0.037 4.037 10 O -0.278 6.278 11 C 0.002 3.998 12 C 0.000 4.000 13 N -0.330 5.330 14 C -0.344 4.344 15 H 0.101 0.899 16 C -0.204 4.204 17 N -0.564 5.564 18 Si 0.744 3.256 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.029 3.971 23 C -0.154 4.154 24 N -0.072 5.072 25 N -0.047 5.047 26 N -0.153 5.153 27 C -0.054 4.054 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.248 0.752 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.443 -24.978 1.095 27.496 hybrid contribution 0.026 0.572 -0.666 0.878 sum -11.418 -24.406 0.429 26.948 Atomic orbital electron populations 1.20723 0.84585 1.05464 1.04669 1.21927 0.96245 0.86324 0.97020 1.21219 0.89046 0.95449 1.18716 1.16701 0.85574 0.82476 0.76126 1.90753 1.15838 1.83625 1.51704 1.45759 1.10428 1.05264 1.73156 1.22692 0.99493 0.79907 0.97627 0.87392 1.23889 0.85856 0.99207 0.94759 1.88764 1.24382 1.80478 1.34205 1.23883 0.95053 0.97059 0.83849 1.22428 0.91239 0.89741 0.96575 1.45396 1.23148 1.13051 1.51363 1.18887 1.06521 0.91998 1.16998 0.89931 1.24843 0.99231 0.96197 1.00121 1.69862 1.31681 1.12217 1.42684 0.86113 0.79274 0.79135 0.81080 1.21422 1.21650 1.20647 1.22394 0.89203 0.89602 0.95870 1.22687 0.96568 0.98578 0.97519 1.74636 1.19023 1.04120 1.09393 1.82026 0.95865 1.03445 1.23363 1.50298 1.06535 1.07770 1.50690 1.22164 1.02453 0.76077 1.04703 0.88999 0.90701 0.86820 0.75237 0.91090 0.89450 0.93695 0.94180 0.93551 0.94583 0.91950 0.88540 0.89720 0.89266 0.88530 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 9.38 36.00 0.34 -0.26 16 2 C 0.12 1.18 7.02 -81.88 -0.57 0.60 16 3 C -0.10 -1.32 6.99 -83.55 -0.58 -1.91 16 4 C 0.61 8.29 7.82 -12.48 -0.10 8.19 16 5 O -0.54 -7.94 14.36 5.28 0.08 -7.86 16 6 N -0.70 -9.54 5.14 -52.76 -0.27 -9.81 16 7 C 0.11 1.54 3.51 -65.78 -0.23 1.30 16 8 H 0.11 1.48 7.54 -51.93 -0.39 1.09 16 9 C 0.04 0.62 7.42 38.24 0.28 0.90 16 10 O -0.36 -6.66 11.32 -35.23 -0.40 -7.05 16 11 C 0.04 0.82 1.66 -90.69 -0.15 0.67 16 12 C 0.13 2.73 8.20 -8.04 -0.07 2.66 16 13 N -0.60 -15.64 3.73 -184.63 -0.69 -16.33 16 14 C -0.22 -6.10 10.73 -15.06 -0.16 -6.26 16 15 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -27.42 11.82 55.49 0.66 -26.77 16 18 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.16 3.76 6.73 -7.91 -0.05 3.70 16 23 C -0.12 -1.91 6.11 -25.50 -0.16 -2.07 16 24 N -0.20 -2.72 12.04 32.85 0.40 -2.32 16 25 N -0.07 -0.83 13.78 60.35 0.83 0.00 16 26 N -0.37 -3.19 4.03 -63.59 -0.26 -3.45 16 27 C 0.09 0.27 11.17 59.85 0.67 0.94 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.24 7.84 -51.93 -0.41 -0.16 16 30 H 0.11 0.92 6.43 -51.93 -0.33 0.58 16 31 H 0.41 5.63 8.31 -40.82 -0.34 5.29 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.60 7.40 -51.93 -0.38 1.22 16 39 H 0.10 1.66 7.82 -51.93 -0.41 1.26 16 40 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 41 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.10 0.06 7.78 -51.93 -0.40 -0.34 16 43 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -34.98 361.21 -6.10 -41.08 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.98 Total: 1.76 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -0.88 Total: 8.19 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: 0.67 Total: -58.69 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.32 Total: -14.92 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.98 -6.10 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053768514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.517 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds