Wall clock time and date at job start Fri Apr 10 2020 18:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36600 * 126.57919 * 2 1 4 4 C 1.47522 * 125.77037 * 0.04481 * 3 2 1 5 5 O 1.21598 * 120.00041 * 359.70906 * 4 3 2 6 6 N 1.34776 * 120.00292 * 179.71514 * 4 3 2 7 7 C 1.46498 * 120.00239 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.76899 * 328.53342 * 7 6 4 9 9 C 1.55056 * 110.86715 * 92.28973 * 7 6 4 10 10 O 1.44608 * 103.66846 * 81.64347 * 9 7 6 11 11 C 1.42834 * 106.73394 * 39.08740 * 10 9 7 12 12 C 1.52650 * 115.96348 * 202.47035 * 11 10 9 13 13 N 1.47224 * 87.78301 * 218.41065 * 12 11 10 14 14 C 1.36935 * 135.96655 * 206.38126 * 13 12 11 15 15 H 1.07995 * 120.00083 * 6.48200 * 14 13 12 16 16 C 1.38817 * 119.99741 * 186.48533 * 14 13 12 17 17 N 1.31620 * 119.99762 * 6.40711 * 16 14 13 18 18 Si 1.86796 * 119.99659 * 186.41024 * 16 14 13 19 19 H 1.48494 * 109.47314 * 84.99017 * 18 16 14 20 20 H 1.48503 * 109.47018 * 204.98577 * 18 16 14 21 21 H 1.48499 * 109.47419 * 324.98234 * 18 16 14 22 22 C 1.47225 * 88.06172 * 26.63735 * 13 12 11 23 23 C 1.53318 * 108.32839 * 334.30342 * 11 10 9 24 24 N 1.34401 * 108.45847 * 179.77419 * 3 2 1 25 25 N 1.28765 * 109.52278 * 0.23321 * 24 3 2 26 26 N 1.34815 * 126.58178 * 180.17158 * 2 1 3 27 27 C 1.46499 * 126.59589 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.47523 * 89.99937 * 1 2 3 29 29 H 1.09006 * 109.47282 * 209.99710 * 1 2 3 30 30 H 1.09000 * 109.47534 * 329.99543 * 1 2 3 31 31 H 0.97002 * 119.99668 * 0.02562 * 6 4 3 32 32 H 1.09007 * 110.58732 * 200.18865 * 9 7 6 33 33 H 1.09003 * 110.58606 * 322.94462 * 9 7 6 34 34 H 1.09000 * 113.49520 * 103.68213 * 12 11 10 35 35 H 1.08995 * 113.56307 * 333.15030 * 12 11 10 36 36 H 0.97006 * 119.99259 * 180.02562 * 17 16 14 37 37 H 1.08999 * 113.49998 * 88.09597 * 22 13 12 38 38 H 1.08998 * 113.49567 * 218.64000 * 22 13 12 39 39 H 1.09001 * 110.56290 * 120.19416 * 23 11 10 40 40 H 1.09001 * 110.56534 * 243.04368 * 23 11 10 41 41 H 1.09002 * 109.47229 * 270.24740 * 27 26 2 42 42 H 1.09006 * 109.46802 * 30.24606 * 27 26 2 43 43 H 1.09001 * 109.47033 * 150.24381 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6858 2.7628 -0.0035 6 7 2.7815 3.4988 0.0066 7 6 2.3373 4.8948 0.0070 8 1 1.3941 5.0005 -0.5290 9 6 2.2186 5.4363 1.4551 10 8 3.5766 5.7958 1.7979 11 6 4.1564 6.3753 0.6282 12 6 5.6808 6.3470 0.5537 13 7 5.6194 7.6899 -0.0466 14 6 6.4070 8.4290 -0.8883 15 1 7.2746 7.9802 -1.3490 16 6 6.0904 9.7551 -1.1493 17 7 5.1101 10.3390 -0.4932 18 14 7.0555 10.7108 -2.4317 19 1 6.4787 10.4567 -3.7762 20 1 6.9806 12.1623 -2.1273 21 1 8.4744 10.2733 -2.4110 22 6 4.3435 7.8926 0.6596 23 6 3.4236 5.8202 -0.5988 24 7 3.5983 0.6789 0.0050 25 7 3.6298 -0.6083 0.0032 26 7 2.3104 -1.0826 -0.0032 27 6 1.8864 -2.4849 -0.0069 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.7291 3.2914 0.0097 32 1 1.5710 6.3126 1.4847 33 1 1.8441 4.6617 2.1244 34 1 6.0688 5.5857 -0.1231 35 1 6.1645 6.3292 1.5303 36 1 4.8886 11.2656 -0.6759 37 1 4.4627 8.2952 1.6654 38 1 3.6032 8.4355 0.0720 39 1 2.9641 6.6281 -1.1683 40 1 4.1069 5.2484 -1.2266 41 1 1.7774 -2.8342 1.0198 42 1 0.9312 -2.5743 -0.5245 43 1 2.6351 -3.0894 -0.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053768514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:53 Heat of formation + Delta-G solvation = 56.218062 kcal Electronic energy + Delta-G solvation = -27070.082987 eV Core-core repulsion = 23153.897421 eV Total energy + Delta-G solvation = -3916.185566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.30278 -41.66351 -40.17761 -37.96608 -36.03102 -35.38384 -34.17502 -33.33056 -31.75078 -29.98491 -28.89467 -28.30968 -27.45908 -26.55916 -24.87885 -23.96004 -22.79150 -21.77970 -21.47592 -20.45212 -19.14633 -18.75219 -17.79150 -17.43139 -17.15533 -16.85995 -16.53834 -16.22175 -16.02939 -15.61960 -15.50118 -15.21578 -15.00000 -14.42803 -14.19831 -14.16446 -14.08591 -13.93484 -13.79300 -13.29624 -13.03696 -12.96063 -12.84414 -12.73953 -12.55149 -12.49797 -12.32127 -12.19952 -12.14510 -11.92789 -11.47585 -11.16260 -11.10820 -10.86658 -10.55132 -10.26007 -9.91539 -8.99216 -7.94497 -5.28260 0.11371 0.57829 1.14297 1.46688 1.49602 1.57498 2.05134 2.18164 2.43744 2.89743 3.16794 3.27191 3.37891 3.43462 3.61421 3.63896 3.65848 3.69294 3.77194 4.00238 4.34761 4.37427 4.42622 4.60634 4.65266 4.67670 4.70131 4.70566 4.74072 4.80838 4.84559 4.88151 4.93679 4.97469 5.09031 5.14161 5.18722 5.40301 5.44571 5.54122 5.84067 6.09448 6.38404 6.86655 6.87598 7.09149 7.55461 8.55609 9.24596 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.025143 B = 0.002617 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.340961 B =10698.472942 C =11129.306177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.134 3.866 3 C -0.135 4.135 4 C 0.609 3.391 5 O -0.554 6.554 6 N -0.697 5.697 7 C 0.123 3.877 8 H 0.120 0.880 9 C 0.037 3.963 10 O -0.372 6.372 11 C 0.072 3.928 12 C 0.124 3.876 13 N -0.626 5.626 14 C -0.230 4.230 15 H 0.090 0.910 16 C -0.065 4.065 17 N -0.954 5.954 18 Si 0.984 3.016 19 H -0.280 1.280 20 H -0.295 1.295 21 H -0.268 1.268 22 C 0.152 3.848 23 C -0.109 4.109 24 N -0.226 5.226 25 N -0.096 5.096 26 N -0.354 5.354 27 C 0.072 3.928 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.412 0.588 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.250 0.750 37 H 0.009 0.991 38 H 0.040 0.960 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 -27.725 0.277 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.005 4.005 3 C -0.275 4.275 4 C 0.395 3.605 5 O -0.432 6.432 6 N -0.347 5.347 7 C 0.018 3.982 8 H 0.138 0.862 9 C -0.040 4.040 10 O -0.290 6.290 11 C 0.031 3.969 12 C -0.001 4.001 13 N -0.354 5.354 14 C -0.357 4.357 15 H 0.108 0.892 16 C -0.259 4.259 17 N -0.602 5.602 18 Si 0.812 3.188 19 H -0.207 1.207 20 H -0.222 1.222 21 H -0.193 1.193 22 C 0.026 3.974 23 C -0.147 4.147 24 N -0.099 5.099 25 N -0.075 5.075 26 N -0.140 5.140 27 C -0.067 4.067 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.248 0.752 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.550 -27.759 0.306 30.466 hybrid contribution 0.304 1.262 -0.338 1.341 sum -12.245 -26.498 -0.031 29.190 Atomic orbital electron populations 1.20848 0.82015 1.06436 1.05798 1.22387 0.97515 0.85660 0.94984 1.21273 0.89577 0.95630 1.21030 1.16832 0.85289 0.82910 0.75491 1.90741 1.16173 1.83973 1.52339 1.45731 1.10547 1.04983 1.73458 1.22495 0.98957 0.79934 0.96793 0.86197 1.24110 0.84193 1.00091 0.95601 1.88749 1.26277 1.80083 1.33922 1.23397 0.94324 0.93594 0.85620 1.22535 0.92935 0.88220 0.96434 1.45689 1.23661 1.14582 1.51494 1.19317 1.06756 0.92541 1.17130 0.89229 1.25732 1.00504 0.97261 1.02377 1.70051 1.33486 1.12178 1.44454 0.85017 0.78385 0.77006 0.78429 1.20678 1.22195 1.19325 1.22335 0.88452 0.92826 0.93786 1.22588 0.97077 0.98830 0.96174 1.74593 1.19965 1.04935 1.10401 1.81913 0.98049 1.03080 1.24479 1.50640 1.05225 1.09449 1.48665 1.22724 1.04185 0.73152 1.06634 0.87560 0.86992 0.88538 0.75242 0.90148 0.88063 0.91559 0.94595 0.94089 0.97290 0.94200 0.89223 0.88991 0.87320 0.85295 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.38 71.23 0.67 -0.19 16 2 C 0.13 2.28 7.02 41.71 0.29 2.57 16 3 C -0.13 -3.27 6.99 40.82 0.29 -2.99 16 4 C 0.61 15.99 7.82 86.69 0.68 16.67 16 5 O -0.55 -15.44 14.36 -4.02 -0.06 -15.50 16 6 N -0.70 -18.43 5.14 -439.10 -2.26 -20.69 16 7 C 0.12 3.37 3.51 46.39 0.16 3.54 16 8 H 0.12 3.08 7.54 -2.39 -0.02 3.06 16 9 C 0.04 1.08 7.42 72.69 0.54 1.62 16 10 O -0.37 -13.62 11.32 -148.98 -1.69 -15.30 16 11 C 0.07 2.81 1.66 -10.83 -0.02 2.79 16 12 C 0.12 5.37 8.20 83.40 0.68 6.06 16 13 N -0.63 -33.21 3.73 -739.17 -2.75 -35.97 16 14 C -0.23 -13.06 10.73 84.04 0.90 -12.16 16 15 H 0.09 4.82 7.84 -2.91 -0.02 4.80 16 16 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 17 N -0.95 -58.60 11.82 21.65 0.26 -58.34 16 18 Si 0.98 45.99 29.56 68.60 2.03 48.01 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.15 7.64 6.73 83.48 0.56 8.20 16 23 C -0.11 -3.53 6.11 31.39 0.19 -3.34 16 24 N -0.23 -6.12 12.04 -49.99 -0.60 -6.72 16 25 N -0.10 -2.27 13.78 37.02 0.51 -1.76 16 26 N -0.35 -5.33 4.03 -355.09 -1.43 -6.76 16 27 C 0.07 0.19 11.17 127.77 1.43 1.62 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.20 7.84 -2.38 -0.02 0.19 16 30 H 0.10 1.34 6.43 -2.39 -0.02 1.32 16 31 H 0.41 11.00 8.31 -92.71 -0.77 10.22 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.18 16 33 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 2.58 7.91 -2.39 -0.02 2.56 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.04 2.14 7.40 -2.39 -0.02 2.12 16 39 H 0.09 3.08 7.82 -2.39 -0.02 3.06 16 40 H 0.09 2.88 7.70 -2.39 -0.02 2.86 16 41 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.13 -0.44 7.78 -2.38 -0.02 -0.46 16 43 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -77.87 361.21 1.12 -76.75 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.28 Total: 15.20 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.84 Total: 21.08 kcal Atomic # 7 Polarization: -123.96 SS G_CDS: -6.28 Total: -130.24 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -1.74 Total: -30.80 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.87 1.12 -76.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053768514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.969 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds