Wall clock time and date at job start Fri Apr 10 2020 18:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48502 * 109.47090 * 270.00001 * 3 2 1 5 5 H 1.48500 * 109.46944 * 29.99887 * 3 2 1 6 6 H 1.48498 * 109.47226 * 150.00090 * 3 2 1 7 7 C 1.38819 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64583 * 0.03301 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.09666 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 N 1.46502 * 111.00105 * 204.88119 * 11 10 9 14 14 C 1.34783 * 119.99989 * 273.54475 * 13 11 10 15 15 O 1.21283 * 119.99981 * 0.02562 * 14 13 11 16 16 C 1.50695 * 120.00227 * 180.02562 * 14 13 11 17 17 H 1.09008 * 110.45388 * 57.39460 * 16 14 13 18 18 C 1.54504 * 110.51270 * 179.97438 * 16 14 13 19 19 C 1.54485 * 104.06174 * 118.64827 * 18 16 14 20 20 O 1.44422 * 104.80231 * 23.97923 * 19 18 16 21 21 C 1.44430 * 105.27550 * 319.48953 * 20 19 18 22 22 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 23 23 H 1.09002 * 110.85092 * 153.69981 * 22 11 10 24 24 N 1.46501 * 110.69436 * 277.04903 * 22 11 10 25 25 C 1.35314 * 125.86617 * 79.53799 * 24 22 11 26 26 C 1.35350 * 106.17245 * 179.90506 * 25 24 22 27 27 N 1.33771 * 106.49727 * 0.35197 * 26 25 24 28 28 N 1.28635 * 108.88450 * 359.77411 * 27 26 25 29 29 C 1.47018 * 125.64899 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00119 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36956 * 322.94042 * 10 9 7 32 32 H 1.09001 * 110.36709 * 85.15235 * 10 9 7 33 33 H 0.96999 * 120.00092 * 93.54637 * 13 11 10 34 34 H 1.08999 * 110.51394 * 237.28965 * 18 16 14 35 35 H 1.08996 * 110.51371 * 0.02562 * 18 16 14 36 36 H 1.08991 * 110.37165 * 142.81040 * 19 18 16 37 37 H 1.09004 * 110.37091 * 265.04065 * 19 18 16 38 38 H 1.09007 * 110.37139 * 281.68171 * 21 20 19 39 39 H 1.08998 * 110.37528 * 159.34853 * 21 20 19 40 40 H 1.08001 * 126.91198 * 0.02562 * 25 24 22 41 41 H 1.08003 * 126.75381 * 180.12968 * 26 25 24 42 42 H 1.09002 * 109.88241 * 298.39024 * 29 9 7 43 43 H 1.09000 * 109.88049 * 59.40154 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 -0.0007 11 6 -0.4021 -3.9323 0.6112 12 1 -0.3535 -3.8979 1.6996 13 7 -1.6889 -4.4701 0.1626 14 6 -2.8182 -4.1607 0.8301 15 8 -2.7692 -3.4365 1.8018 16 6 -4.1418 -4.7143 0.3690 17 1 -4.1120 -5.8038 0.3467 18 6 -5.2834 -4.2231 1.2869 19 6 -6.2058 -3.4210 0.3422 20 8 -5.9392 -3.9535 -0.9735 21 6 -4.5093 -4.1510 -1.0216 22 6 0.7808 -4.7551 0.0292 23 1 1.0280 -5.5933 0.6807 24 7 0.4700 -5.2226 -1.3240 25 6 0.5499 -4.4848 -2.4555 26 6 0.1784 -5.3042 -3.4667 27 7 -0.1142 -6.4852 -2.9108 28 7 0.0687 -6.4040 -1.6401 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5998 -1.7587 0.6143 32 1 -0.5266 -2.4851 -1.0193 33 1 -1.7282 -5.0489 -0.6147 34 1 -5.8195 -5.0696 1.7161 35 1 -4.8906 -3.5794 2.0739 36 1 -7.2508 -3.5766 0.6100 37 1 -5.9587 -2.3601 0.3812 38 1 -4.0008 -3.2022 -1.1932 39 1 -4.2512 -4.8673 -1.8016 40 1 0.8514 -3.4509 -2.5357 41 1 0.1249 -5.0528 -4.5157 42 1 2.5287 -3.8643 -0.9012 43 1 2.5600 -3.8500 0.8828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069900506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:10 Heat of formation + Delta-G solvation = 62.114505 kcal Electronic energy + Delta-G solvation = -28577.945336 eV Core-core repulsion = 24662.015459 eV Total energy + Delta-G solvation = -3915.929877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.12261 -40.34638 -38.77173 -37.64367 -34.30888 -33.58314 -32.30776 -31.77184 -30.73421 -29.62198 -28.66532 -27.57634 -25.04440 -23.61929 -22.84609 -22.43746 -22.17210 -20.54757 -20.25726 -19.77135 -17.92105 -17.56063 -17.05397 -16.54987 -15.96476 -15.52023 -15.46692 -15.15799 -14.73334 -14.65169 -14.42800 -14.09672 -13.70206 -13.49472 -13.13018 -12.97354 -12.75793 -12.48712 -12.19856 -11.96630 -11.56466 -11.49767 -11.44722 -11.34768 -11.06881 -10.89960 -10.86327 -10.76435 -10.53858 -10.23809 -10.03230 -9.91017 -9.88980 -9.66459 -9.14344 -8.89248 -8.79747 -7.18004 -5.88149 -3.34950 1.81834 2.48225 2.72924 2.77014 3.18072 3.28193 3.33761 3.36303 3.88896 4.26345 4.34173 4.50161 4.60059 4.68901 4.79053 4.84355 4.99344 5.01068 5.17113 5.22025 5.27978 5.35185 5.44616 5.51190 5.55880 5.64189 5.68075 5.71088 5.76848 5.87444 5.97099 6.01390 6.08465 6.13414 6.36210 6.48815 6.63689 6.86514 7.07562 7.34891 7.54676 7.62996 8.06925 8.33099 8.70262 8.93442 9.54203 10.11332 11.14786 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.010018 B = 0.005333 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.350522 B = 5249.258312 C = 7006.931096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.001 4.001 3 Si 0.919 3.081 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.598 5.598 10 C 0.144 3.856 11 C 0.111 3.889 12 H 0.114 0.886 13 N -0.716 5.716 14 C 0.524 3.476 15 O -0.524 6.524 16 C -0.145 4.145 17 H 0.107 0.893 18 C -0.145 4.145 19 C 0.044 3.956 20 O -0.373 6.373 21 C 0.058 3.942 22 C 0.117 3.883 23 H 0.122 0.878 24 N -0.277 5.277 25 C -0.017 4.017 26 C -0.068 4.068 27 N -0.276 5.276 28 N -0.103 5.103 29 C 0.129 3.871 30 H 0.257 0.743 31 H 0.123 0.877 32 H 0.022 0.978 33 H 0.396 0.604 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.194 0.806 41 H 0.186 0.814 42 H 0.041 0.959 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 -9.241 -1.116 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.748 3.252 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.325 5.325 10 C 0.019 3.981 11 C 0.003 3.997 12 H 0.131 0.869 13 N -0.367 5.367 14 C 0.309 3.691 15 O -0.399 6.399 16 C -0.167 4.167 17 H 0.125 0.875 18 C -0.183 4.183 19 C -0.033 4.033 20 O -0.291 6.291 21 C -0.020 4.020 22 C 0.014 3.986 23 H 0.139 0.861 24 N -0.071 5.071 25 C -0.168 4.168 26 C -0.225 4.225 27 N -0.142 5.142 28 N -0.083 5.083 29 C 0.002 3.998 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.039 0.961 33 H 0.230 0.770 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.211 0.789 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.021 -9.928 -0.021 11.611 hybrid contribution 1.050 1.666 -0.650 2.074 sum -4.970 -8.262 -0.671 9.665 Atomic orbital electron populations 1.69739 1.04938 1.25436 1.55893 1.24839 0.95733 0.97992 1.01254 0.86027 0.78569 0.82897 0.77670 1.21411 1.21488 1.20510 1.19007 0.90537 0.81633 1.45295 0.89955 1.44393 1.01288 0.99339 1.87508 1.22421 0.84860 0.91803 0.99062 1.23122 0.79660 0.96105 1.00766 0.86872 1.45796 1.06728 1.51625 1.32593 1.20185 0.85078 0.80645 0.83201 1.90718 1.86270 1.36167 1.26793 1.22700 0.93652 1.02634 0.97671 0.87473 1.22959 0.94779 1.01321 0.99252 1.23474 1.00032 0.97832 0.81945 1.89113 1.21939 1.84806 1.33247 1.23350 0.82454 1.01009 0.95170 1.23257 0.98612 0.98759 0.77971 0.86053 1.47454 1.42367 1.08387 1.08876 1.23927 1.06149 1.01503 0.85242 1.23557 1.07293 0.90542 1.01082 1.75048 1.17862 1.22045 0.99277 1.78258 1.17895 1.02258 1.09849 1.21655 0.92099 0.85363 1.00696 0.93261 0.85943 0.96058 0.76959 0.90285 0.87834 0.88906 0.91742 0.91262 0.88465 0.78863 0.79655 0.94097 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.76 10.09 55.49 0.56 -24.20 16 2 C 0.00 -0.03 5.49 -17.43 -0.10 -0.13 16 3 Si 0.92 20.60 29.55 -169.99 -5.02 15.57 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.24 -5.86 10.27 -15.06 -0.15 -6.01 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -13.03 3.39 -170.07 -0.58 -13.61 16 10 C 0.14 3.09 5.06 -2.53 -0.01 3.08 16 11 C 0.11 1.90 3.18 -65.64 -0.21 1.69 16 12 H 0.11 2.05 7.73 -51.93 -0.40 1.65 16 13 N -0.72 -11.13 5.17 -51.59 -0.27 -11.40 16 14 C 0.52 8.40 7.01 -10.98 -0.08 8.32 16 15 O -0.52 -10.29 15.03 5.55 0.08 -10.20 16 16 C -0.14 -1.84 3.51 -90.21 -0.32 -2.16 16 17 H 0.11 1.16 8.14 -51.92 -0.42 0.74 16 18 C -0.15 -1.72 6.67 -25.16 -0.17 -1.89 16 19 C 0.04 0.51 7.63 37.94 0.29 0.80 16 20 O -0.37 -5.08 11.65 -35.23 -0.41 -5.49 16 21 C 0.06 0.74 7.17 37.93 0.27 1.01 16 22 C 0.12 1.76 3.99 -65.96 -0.26 1.50 16 23 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16 24 N -0.28 -4.19 2.27 -52.85 -0.12 -4.31 16 25 C -0.02 -0.25 9.24 -17.05 -0.16 -0.41 16 26 C -0.07 -0.95 12.05 -17.74 -0.21 -1.16 16 27 N -0.28 -4.38 12.41 30.24 0.38 -4.00 16 28 N -0.10 -1.64 12.49 60.35 0.75 -0.89 16 29 C 0.13 2.21 6.32 -3.07 -0.02 2.19 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.12 3.20 5.87 -51.93 -0.30 2.89 16 32 H 0.02 0.49 7.15 -51.93 -0.37 0.12 16 33 H 0.40 5.83 6.94 -40.82 -0.28 5.55 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.41 6.50 -51.93 -0.34 1.07 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.19 3.10 7.56 -52.49 -0.40 2.70 16 41 H 0.19 1.98 8.06 -52.48 -0.42 1.56 16 42 H 0.04 0.70 7.43 -51.93 -0.39 0.31 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -29.42 349.21 -6.31 -35.72 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.82 Total: 10.70 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.13 Total: 6.84 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.72 Total: -58.41 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.33 Total: -15.69 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.42 -6.31 -35.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069900506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.837 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds