Wall clock time and date at job start Fri Apr 10 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48502 * 109.47090 * 270.00001 * 3 2 1 5 5 H 1.48500 * 109.46944 * 29.99887 * 3 2 1 6 6 H 1.48498 * 109.47226 * 150.00090 * 3 2 1 7 7 C 1.38819 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64583 * 0.03301 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.09666 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 N 1.46502 * 111.00105 * 204.88119 * 11 10 9 14 14 C 1.34783 * 119.99989 * 273.54475 * 13 11 10 15 15 O 1.21283 * 119.99981 * 0.02562 * 14 13 11 16 16 C 1.50695 * 120.00227 * 180.02562 * 14 13 11 17 17 H 1.09008 * 110.45388 * 57.39460 * 16 14 13 18 18 C 1.54504 * 110.51270 * 179.97438 * 16 14 13 19 19 C 1.54485 * 104.06174 * 118.64827 * 18 16 14 20 20 O 1.44422 * 104.80231 * 23.97923 * 19 18 16 21 21 C 1.44430 * 105.27550 * 319.48953 * 20 19 18 22 22 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 23 23 H 1.09002 * 110.85092 * 153.69981 * 22 11 10 24 24 N 1.46501 * 110.69436 * 277.04903 * 22 11 10 25 25 C 1.35314 * 125.86617 * 79.53799 * 24 22 11 26 26 C 1.35350 * 106.17245 * 179.90506 * 25 24 22 27 27 N 1.33771 * 106.49727 * 0.35197 * 26 25 24 28 28 N 1.28635 * 108.88450 * 359.77411 * 27 26 25 29 29 C 1.47018 * 125.64899 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00119 * 359.97438 * 1 2 3 31 31 H 1.08999 * 110.36956 * 322.94042 * 10 9 7 32 32 H 1.09001 * 110.36709 * 85.15235 * 10 9 7 33 33 H 0.96999 * 120.00092 * 93.54637 * 13 11 10 34 34 H 1.08999 * 110.51394 * 237.28965 * 18 16 14 35 35 H 1.08996 * 110.51371 * 0.02562 * 18 16 14 36 36 H 1.08991 * 110.37165 * 142.81040 * 19 18 16 37 37 H 1.09004 * 110.37091 * 265.04065 * 19 18 16 38 38 H 1.09007 * 110.37139 * 281.68171 * 21 20 19 39 39 H 1.08998 * 110.37528 * 159.34853 * 21 20 19 40 40 H 1.08001 * 126.91198 * 0.02562 * 25 24 22 41 41 H 1.08003 * 126.75381 * 180.12968 * 26 25 24 42 42 H 1.09002 * 109.88241 * 298.39024 * 29 9 7 43 43 H 1.09000 * 109.88049 * 59.40154 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 -0.0007 11 6 -0.4021 -3.9323 0.6112 12 1 -0.3535 -3.8979 1.6996 13 7 -1.6889 -4.4701 0.1626 14 6 -2.8182 -4.1607 0.8301 15 8 -2.7692 -3.4365 1.8018 16 6 -4.1418 -4.7143 0.3690 17 1 -4.1120 -5.8038 0.3467 18 6 -5.2834 -4.2231 1.2869 19 6 -6.2058 -3.4210 0.3422 20 8 -5.9392 -3.9535 -0.9735 21 6 -4.5093 -4.1510 -1.0216 22 6 0.7808 -4.7551 0.0292 23 1 1.0280 -5.5933 0.6807 24 7 0.4700 -5.2226 -1.3240 25 6 0.5499 -4.4848 -2.4555 26 6 0.1784 -5.3042 -3.4667 27 7 -0.1142 -6.4852 -2.9108 28 7 0.0687 -6.4040 -1.6401 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5998 -1.7587 0.6143 32 1 -0.5266 -2.4851 -1.0193 33 1 -1.7282 -5.0489 -0.6147 34 1 -5.8195 -5.0696 1.7161 35 1 -4.8906 -3.5794 2.0739 36 1 -7.2508 -3.5766 0.6100 37 1 -5.9587 -2.3601 0.3812 38 1 -4.0008 -3.2022 -1.1932 39 1 -4.2512 -4.8673 -1.8016 40 1 0.8514 -3.4509 -2.5357 41 1 0.1249 -5.0528 -4.5157 42 1 2.5287 -3.8643 -0.9012 43 1 2.5600 -3.8500 0.8828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069900506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:09 Heat of formation + Delta-G solvation = 40.990832 kcal Electronic energy + Delta-G solvation = -28578.861327 eV Core-core repulsion = 24662.015459 eV Total energy + Delta-G solvation = -3916.845868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.33012 -41.57010 -40.03544 -39.00704 -35.89104 -34.94189 -33.55671 -33.25759 -31.93125 -30.85486 -30.03734 -29.06272 -26.74890 -24.78605 -24.05970 -23.68303 -23.36114 -22.04503 -21.56814 -21.05584 -19.32890 -18.85317 -18.60023 -17.61932 -17.23171 -16.96360 -16.62870 -16.49943 -16.09687 -15.85892 -15.69393 -15.69065 -14.96777 -14.83241 -14.57856 -14.42196 -13.95705 -13.93854 -13.40701 -13.31582 -13.14595 -12.83575 -12.75882 -12.55589 -12.42278 -12.31873 -12.28812 -12.10695 -11.92373 -11.84555 -11.81543 -11.17573 -11.01135 -10.93758 -10.78621 -10.31745 -10.23688 -9.00857 -7.81710 -5.28751 0.59180 1.24737 1.43650 1.48484 1.49397 1.57656 1.61412 1.90709 2.45968 2.87352 3.16045 3.30058 3.31715 3.35759 3.50494 3.66400 3.70661 3.73521 3.90000 4.01930 4.14790 4.16770 4.22611 4.29439 4.31394 4.37886 4.57810 4.65476 4.69505 4.76068 4.77181 4.78554 4.95440 4.97759 5.11737 5.26598 5.38947 5.47357 5.63102 5.63973 5.71122 6.19122 6.29454 6.99490 7.05430 7.50252 7.68019 8.26016 9.18692 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.010018 B = 0.005333 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.350522 B = 5249.258312 C = 7006.931096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.059 4.059 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.267 1.267 7 C -0.235 4.235 8 H 0.092 0.908 9 N -0.614 5.614 10 C 0.159 3.841 11 C 0.122 3.878 12 H 0.106 0.894 13 N -0.707 5.707 14 C 0.520 3.480 15 O -0.565 6.565 16 C -0.138 4.138 17 H 0.137 0.863 18 C -0.143 4.143 19 C 0.041 3.959 20 O -0.382 6.382 21 C 0.060 3.940 22 C 0.133 3.867 23 H 0.156 0.844 24 N -0.276 5.276 25 C -0.029 4.029 26 C -0.054 4.054 27 N -0.290 5.290 28 N -0.106 5.106 29 C 0.128 3.872 30 H 0.245 0.755 31 H 0.073 0.927 32 H 0.001 0.999 33 H 0.403 0.597 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.117 0.883 40 H 0.182 0.818 41 H 0.217 0.783 42 H 0.050 0.950 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 -11.500 -1.660 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.191 1.191 7 C -0.363 4.363 8 H 0.110 0.890 9 N -0.341 5.341 10 C 0.033 3.967 11 C 0.014 3.986 12 H 0.123 0.877 13 N -0.358 5.358 14 C 0.308 3.692 15 O -0.443 6.443 16 C -0.159 4.159 17 H 0.155 0.845 18 C -0.181 4.181 19 C -0.036 4.036 20 O -0.301 6.301 21 C -0.018 4.018 22 C 0.030 3.970 23 H 0.173 0.827 24 N -0.070 5.070 25 C -0.180 4.180 26 C -0.210 4.210 27 N -0.156 5.156 28 N -0.085 5.085 29 C 0.002 3.998 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.019 0.981 33 H 0.239 0.761 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.140 0.860 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.135 0.865 40 H 0.199 0.801 41 H 0.234 0.766 42 H 0.067 0.933 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.650 -12.239 -0.587 13.493 hybrid contribution 0.962 2.349 -0.515 2.590 sum -4.689 -9.890 -1.102 11.001 Atomic orbital electron populations 1.70029 1.06244 1.24985 1.57977 1.25573 0.96366 1.00932 1.02345 0.85113 0.77704 0.79328 0.77366 1.21355 1.22902 1.19133 1.19381 0.91168 0.82725 1.43035 0.89025 1.44522 1.01626 1.00604 1.87373 1.21948 0.84664 0.93059 0.97061 1.22719 0.81448 0.94367 1.00097 0.87654 1.45714 1.06195 1.51261 1.32660 1.20844 0.86169 0.79765 0.82457 1.90708 1.86930 1.37942 1.28729 1.22761 0.91595 1.04065 0.97513 0.84539 1.22971 0.94603 1.01953 0.98541 1.23610 1.01685 0.97044 0.81223 1.89106 1.21949 1.84837 1.34219 1.23332 0.82232 1.00351 0.95856 1.23147 0.96275 0.99033 0.78511 0.82670 1.47430 1.42478 1.08368 1.08757 1.23887 1.07096 1.01226 0.85785 1.24027 1.05360 0.89425 1.02223 1.75058 1.18410 1.22764 0.99349 1.78249 1.18022 1.02157 1.10088 1.21805 0.92865 0.83407 1.01699 0.94544 0.90866 0.98093 0.76115 0.87445 0.89998 0.86031 0.93130 0.93711 0.86506 0.80126 0.76636 0.93266 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.62 10.09 21.65 0.22 -53.41 16 2 C -0.06 -3.10 5.49 84.86 0.47 -2.63 16 3 Si 0.98 43.14 29.55 68.60 2.03 45.17 16 4 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.23 -11.64 10.27 84.04 0.86 -10.77 16 8 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.61 -26.90 3.39 -691.97 -2.35 -29.25 16 10 C 0.16 7.06 5.06 86.86 0.44 7.50 16 11 C 0.12 4.16 3.18 46.47 0.15 4.31 16 12 H 0.11 3.84 7.73 -2.39 -0.02 3.82 16 13 N -0.71 -21.65 5.17 -435.53 -2.25 -23.90 16 14 C 0.52 16.72 7.01 87.65 0.61 17.34 16 15 O -0.56 -22.93 15.03 -3.04 -0.05 -22.98 16 16 C -0.14 -3.32 3.51 -10.53 -0.04 -3.35 16 17 H 0.14 2.53 8.14 -2.38 -0.02 2.51 16 18 C -0.14 -3.21 6.67 31.61 0.21 -3.00 16 19 C 0.04 0.91 7.63 72.49 0.55 1.46 16 20 O -0.38 -9.91 11.65 -148.98 -1.74 -11.65 16 21 C 0.06 1.49 7.17 72.48 0.52 2.01 16 22 C 0.13 3.75 3.99 46.27 0.18 3.93 16 23 H 0.16 3.43 8.14 -2.39 -0.02 3.41 16 24 N -0.28 -7.81 2.27 -321.12 -0.73 -8.54 16 25 C -0.03 -0.82 9.24 83.49 0.77 -0.05 16 26 C -0.05 -1.37 12.05 83.73 1.01 -0.36 16 27 N -0.29 -8.43 12.41 -58.26 -0.72 -9.16 16 28 N -0.11 -3.10 12.49 37.02 0.46 -2.63 16 29 C 0.13 4.18 6.32 86.73 0.55 4.72 16 30 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.07 4.06 5.87 -2.39 -0.01 4.04 16 32 H 0.00 0.06 7.15 -2.39 -0.02 0.04 16 33 H 0.40 11.30 6.94 -92.71 -0.64 10.66 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.08 2.25 6.50 -2.39 -0.02 2.24 16 36 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.04 1.32 7.86 -2.38 -0.02 1.31 16 39 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.18 5.75 7.56 -2.91 -0.02 5.73 16 41 H 0.22 3.95 8.06 -2.91 -0.02 3.92 16 42 H 0.05 1.57 7.43 -2.39 -0.02 1.55 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -65.98 349.21 1.57 -64.41 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.40 Total: 30.85 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.29 Total: 21.09 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -5.37 Total: -126.89 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.78 Total: -34.63 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -65.98 1.57 -64.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069900506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.401 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds