Wall clock time and date at job start Fri Apr 10 2020 18:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48495 * 109.47242 * 274.81960 * 3 2 1 5 5 H 1.48502 * 109.47051 * 34.82089 * 3 2 1 6 6 H 1.48500 * 109.47152 * 154.81939 * 3 2 1 7 7 C 1.38812 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00115 * 163.47438 * 7 2 1 9 9 N 1.36933 * 119.99827 * 343.47458 * 7 2 1 10 10 C 1.47172 * 121.22610 * 333.54040 * 9 7 2 11 11 C 1.53228 * 108.70469 * 230.92204 * 10 9 7 12 12 O 1.43082 * 109.43869 * 308.41321 * 11 10 9 13 13 C 1.42688 * 113.87035 * 61.65501 * 12 11 10 14 14 H 1.08995 * 108.93095 * 55.58713 * 13 12 11 15 15 C 1.52510 * 110.62235 * 174.64204 * 13 12 11 16 16 C 1.53598 * 109.73067 * 61.17232 * 15 13 12 17 17 N 1.46985 * 108.20840 * 54.73850 * 16 15 13 18 18 C 1.34777 * 120.71423 * 125.44358 * 17 16 15 19 19 O 1.21285 * 119.99376 * 179.71990 * 18 17 16 20 20 C 1.50696 * 120.00393 * 359.72319 * 18 17 16 21 21 N 1.46494 * 109.47085 * 179.97438 * 20 18 17 22 22 N 1.28598 * 124.62010 * 90.00053 * 21 20 18 23 23 C 1.31377 * 108.72524 * 179.97438 * 22 21 20 24 24 C 1.39680 * 105.89666 * 0.22821 * 23 22 21 25 25 N 1.28599 * 124.62159 * 269.99560 * 21 20 18 26 26 C 1.46785 * 118.56073 * 305.16974 * 17 16 15 27 27 C 1.47598 * 121.22477 * 153.52155 * 9 7 2 28 28 H 1.08999 * 111.16357 * 7.22678 * 27 9 7 29 29 H 0.97004 * 119.99449 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.59936 * 111.15302 * 10 9 7 31 31 H 1.09000 * 109.59563 * 350.68283 * 10 9 7 32 32 H 1.08992 * 109.47781 * 188.42541 * 11 10 9 33 33 H 1.09000 * 109.48315 * 68.40545 * 11 10 9 34 34 H 1.09002 * 109.41916 * 181.39671 * 15 13 12 35 35 H 1.08998 * 109.41530 * 301.26169 * 15 13 12 36 36 H 1.09005 * 109.78558 * 295.11185 * 16 15 13 37 37 H 1.08998 * 109.72521 * 174.33556 * 16 15 13 38 38 H 1.09004 * 109.47168 * 59.99363 * 20 18 17 39 39 H 1.09000 * 109.46792 * 299.99729 * 20 18 17 40 40 H 1.07997 * 127.05788 * 179.97438 * 23 22 21 41 41 H 1.08003 * 127.05556 * 179.73990 * 24 23 22 42 42 H 1.09003 * 109.52287 * 174.44331 * 26 17 16 43 43 H 1.08999 * 109.52461 * 294.57118 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3959 2.1052 -1.3951 5 1 1.5024 2.6211 0.7995 6 1 3.5951 1.4128 0.5957 7 6 2.0103 -1.2021 0.0005 8 1 3.0567 -1.2216 -0.2655 9 7 1.3680 -2.3634 0.3384 10 6 0.1927 -2.3553 1.2241 11 6 0.4156 -3.3753 2.3457 12 8 0.7814 -4.6362 1.7768 13 6 1.9971 -4.6021 1.0305 14 1 2.7927 -4.2167 1.6681 15 6 2.3847 -6.0037 0.5710 16 6 1.2884 -6.5716 -0.3427 17 7 1.0637 -5.6177 -1.4381 18 6 1.1448 -6.0142 -2.7237 19 8 0.9519 -5.2171 -3.6173 20 6 1.4750 -7.4477 -3.0507 21 7 1.5026 -7.6228 -4.5049 22 7 2.5471 -7.4707 -5.2394 23 6 2.2206 -7.7037 -6.4905 24 6 0.8590 -8.0151 -6.4789 25 7 0.4856 -7.9498 -5.2209 26 6 0.7430 -4.2254 -1.1015 27 6 1.8287 -3.6691 -0.1727 28 1 2.7719 -3.5709 -0.7100 29 1 -0.4849 0.8401 0.0004 30 1 -0.6962 -2.6265 0.6546 31 1 0.0655 -1.3616 1.6537 32 1 -0.5029 -3.4891 2.9213 33 1 1.2142 -3.0268 3.0006 34 1 3.3271 -5.9584 0.0252 35 1 2.5002 -6.6510 1.4403 36 1 0.3666 -6.7021 0.2243 37 1 1.6097 -7.5296 -0.7512 38 1 0.7171 -8.1024 -2.6205 39 1 2.4508 -7.6995 -2.6355 40 1 2.8706 -7.6593 -7.3518 41 1 0.2403 -8.2606 -7.3293 42 1 0.7040 -3.6298 -2.0137 43 1 -0.2232 -4.1854 -0.5987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074255983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:46 Heat of formation + Delta-G solvation = 78.107431 kcal Electronic energy + Delta-G solvation = -28232.166782 eV Core-core repulsion = 24316.930410 eV Total energy + Delta-G solvation = -3915.236372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.55225 -40.25041 -38.68970 -35.90984 -34.71774 -33.83240 -32.41980 -31.91304 -31.57074 -29.78025 -28.59241 -27.24347 -24.92135 -23.95505 -22.92204 -22.90659 -21.99126 -21.48742 -19.71537 -18.45285 -17.80794 -17.35646 -16.96734 -16.00673 -15.86367 -15.51394 -15.32544 -15.18462 -14.97839 -14.57932 -14.33024 -14.30889 -13.80109 -13.60800 -13.21087 -12.89269 -12.66403 -12.41186 -12.30788 -12.06891 -11.66335 -11.46169 -11.12373 -11.04022 -10.84050 -10.81179 -10.67450 -10.32789 -10.31301 -10.28151 -10.15247 -9.99149 -9.69902 -9.24883 -9.06763 -8.67457 -8.38361 -6.81973 -5.91066 -3.35323 1.71671 2.12762 2.48263 2.56463 3.11654 3.31901 3.39210 3.40871 4.10147 4.20312 4.29385 4.37404 4.65593 4.75548 4.81912 4.98678 5.02831 5.22782 5.24534 5.29599 5.32918 5.52235 5.64567 5.67691 5.89660 5.94556 5.96570 5.99464 6.08331 6.14137 6.20883 6.27504 6.35758 6.49361 6.59401 6.65963 6.82943 7.02225 7.42230 7.49680 7.66525 7.81278 8.16257 8.25896 8.30687 9.03575 9.64966 10.21819 11.16528 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.003733 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.038593 B = 7498.178552 C = 8669.685375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.583 5.583 10 C 0.137 3.863 11 C 0.040 3.960 12 O -0.387 6.387 13 C 0.080 3.920 14 H 0.053 0.947 15 C -0.124 4.124 16 C 0.108 3.892 17 N -0.599 5.599 18 C 0.498 3.502 19 O -0.523 6.523 20 C 0.123 3.877 21 N -0.142 5.142 22 N -0.280 5.280 23 C -0.027 4.027 24 C -0.027 4.027 25 N -0.282 5.282 26 C 0.106 3.894 27 C 0.135 3.865 28 H 0.075 0.925 29 H 0.256 0.744 30 H 0.029 0.971 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.197 0.803 41 H 0.197 0.803 42 H 0.089 0.911 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 -17.987 -2.002 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.305 5.305 10 C 0.012 3.988 11 C -0.038 4.038 12 O -0.307 6.307 13 C 0.020 3.980 14 H 0.071 0.929 15 C -0.162 4.162 16 C -0.015 4.015 17 N -0.334 5.334 18 C 0.282 3.718 19 O -0.398 6.398 20 C -0.001 4.001 21 N -0.042 5.042 22 N -0.121 5.121 23 C -0.210 4.210 24 C -0.210 4.210 25 N -0.122 5.122 26 C -0.017 4.017 27 C 0.026 3.974 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.214 0.786 41 H 0.214 0.786 42 H 0.108 0.892 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.744 -17.343 -1.053 17.590 hybrid contribution 0.452 1.140 -1.013 1.591 sum 3.196 -16.203 -2.067 16.644 Atomic orbital electron populations 1.70020 1.05289 1.25827 1.53155 1.25070 0.95349 0.98551 1.00278 0.86230 0.79164 0.83328 0.77773 1.21276 1.21421 1.20314 1.19172 0.92484 0.84124 1.42918 0.91306 1.44299 1.33593 1.00730 1.51898 1.21478 0.88944 0.98617 0.89763 1.23336 0.98951 0.84882 0.96647 1.87709 1.41258 1.32254 1.69460 1.22213 0.87299 0.94526 0.93914 0.92855 1.21898 0.98343 0.96458 0.99527 1.21853 1.00110 0.90995 0.88544 1.48280 1.68899 1.12005 1.04196 1.20344 0.78718 0.89282 0.83490 1.90799 1.49127 1.54068 1.45794 1.21806 1.07115 0.97794 0.73412 1.47369 1.02136 1.46496 1.08201 1.74040 1.15718 1.18179 1.04153 1.24766 0.96283 1.05319 0.94677 1.24764 0.95569 1.06312 0.94401 1.74036 1.16376 1.17058 1.04749 1.22436 1.00104 0.78324 1.00825 1.21589 0.96525 0.87213 0.92043 0.90687 0.93390 0.95307 0.88562 0.90051 0.94021 0.90236 0.90123 0.89856 0.90603 0.84766 0.84717 0.78616 0.78626 0.89241 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 11.14 55.49 0.62 -24.81 16 2 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 3 Si 0.91 21.38 29.58 -169.99 -5.03 16.35 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.89 9.71 -15.06 -0.15 -7.03 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 9 N -0.58 -13.97 2.71 -163.87 -0.44 -14.42 16 10 C 0.14 3.12 4.93 -3.56 -0.02 3.10 16 11 C 0.04 0.73 6.98 37.28 0.26 0.99 16 12 O -0.39 -6.76 9.59 -35.23 -0.34 -7.10 16 13 C 0.08 1.32 2.72 -26.88 -0.07 1.24 16 14 H 0.05 0.92 8.13 -51.93 -0.42 0.49 16 15 C -0.12 -1.45 5.84 -26.67 -0.16 -1.60 16 16 C 0.11 1.19 6.20 -3.47 -0.02 1.17 16 17 N -0.60 -9.20 2.95 -172.51 -0.51 -9.71 16 18 C 0.50 8.04 7.77 -10.99 -0.09 7.96 16 19 O -0.52 -11.26 15.84 5.55 0.09 -11.17 16 20 C 0.12 1.42 5.37 -5.20 -0.03 1.39 16 21 N -0.14 -2.04 3.44 -11.66 -0.04 -2.08 16 22 N -0.28 -4.06 12.05 30.67 0.37 -3.69 16 23 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 24 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 25 N -0.28 -4.07 12.05 30.68 0.37 -3.70 16 26 C 0.11 2.11 5.62 -3.72 -0.02 2.09 16 27 C 0.14 2.71 3.00 -67.07 -0.20 2.51 16 28 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 31 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.95 7.94 -51.93 -0.41 0.54 16 37 H 0.08 0.52 5.94 -51.93 -0.31 0.22 16 38 H 0.13 1.12 7.92 -51.93 -0.41 0.71 16 39 H 0.14 1.12 7.72 -51.93 -0.40 0.72 16 40 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 42 H 0.09 2.12 7.00 -51.93 -0.36 1.76 16 43 H 0.07 1.52 6.57 -51.93 -0.34 1.17 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -35.26 345.60 -6.56 -41.82 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.85 Total: 2.45 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -1.00 Total: 10.85 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.36 Total: -58.41 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.25 Total: -18.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.26 -6.56 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074255983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.926 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds